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Search of human proteins with 239740965
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740965 PREDICTED: hypothetical protein XP_002344115 [Homo
sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239740965 PREDICTED: hypothetical protein XP_002344115 [Homo ... 349 5e-97
gi|239745863 PREDICTED: hypothetical protein [Homo sapiens] 225 2e-59
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 30 0.95
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 30 0.95
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 29 1.6
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 29 1.6
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 29 1.6
gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens] 29 1.6
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 28 3.6
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens] 28 3.6
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 28 3.6
gi|239755857 PREDICTED: hypothetical protein [Homo sapiens] 28 3.6
gi|239750361 PREDICTED: hypothetical protein XP_002347406 [Homo ... 28 3.6
gi|239744665 PREDICTED: hypothetical protein XP_002343232 [Homo ... 28 3.6
gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens] 28 3.6
gi|154146262 Fc fragment of IgG binding protein [Homo sapiens] 28 3.6
gi|19923901 hypothetical protein LOC91523 [Homo sapiens] 28 4.7
gi|224922839 hypothetical protein LOC138311 [Homo sapiens] 27 6.1
gi|19924103 synapsin II isoform IIa [Homo sapiens] 27 6.1
gi|19924101 synapsin II isoform IIb [Homo sapiens] 27 6.1
gi|153792764 hypothetical protein LOC57624 [Homo sapiens] 27 8.0
gi|83367077 mucin 16 [Homo sapiens] 27 8.0
gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens] 27 8.0
>gi|239740965 PREDICTED: hypothetical protein XP_002344115 [Homo
sapiens]
Length = 166
Score = 349 bits (896), Expect = 5e-97
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MRALPSSLPSPRGRTQKASLLRSDPGTTCFSSHCPGHHFPLRVGKSVVLVTTSWRFSPSG 60
MRALPSSLPSPRGRTQKASLLRSDPGTTCFSSHCPGHHFPLRVGKSVVLVTTSWRFSPSG
Sbjct: 1 MRALPSSLPSPRGRTQKASLLRSDPGTTCFSSHCPGHHFPLRVGKSVVLVTTSWRFSPSG 60
Query: 61 KVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKV 120
KVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKV
Sbjct: 61 KVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKV 120
Query: 121 TQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWRGAEVVLGPTRLFL 166
TQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWRGAEVVLGPTRLFL
Sbjct: 121 TQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWRGAEVVLGPTRLFL 166
>gi|239745863 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 225 bits (573), Expect = 2e-59
Identities = 112/133 (84%), Positives = 117/133 (87%), Gaps = 4/133 (3%)
Query: 38 HFPLRVGKSVVLVTTSWRFSPSG----KVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLP 93
H PL + +S + S FS + +VQTPHPPNLDGPRRANRNTFLWTCHVGIPDLP
Sbjct: 76 HQPLLLKESSGIAAPSAPFSEALLRFLEVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLP 135
Query: 94 ALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWR 153
ALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWR
Sbjct: 136 ALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWR 195
Query: 154 GAEVVLGPTRLFL 166
GAEVVLGPTRLFL
Sbjct: 196 GAEVVLGPTRLFL 208
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 30.0 bits (66), Expect = 0.95
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 37 HHFPLRVGKSVVLVTTSWRFSPSGKVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALP 96
HHFP ++ K+ L + S +S SG +T P L P V +P P
Sbjct: 701 HHFPKQLAKARALHSLSQLYSLSGCSRTQQPAPLAAP----------AAQVSVPAPSGEP 750
Query: 97 APASFLGTQLTLKKASDGPRTEK 119
++ T +KA P T +
Sbjct: 751 QASTPRATGRGARKAGSEPETSR 773
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 30.0 bits (66), Expect = 0.95
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 37 HHFPLRVGKSVVLVTTSWRFSPSGKVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALP 96
HHFP ++ K+ L + S +S SG +T P L P V +P P
Sbjct: 701 HHFPKQLAKARALHSLSQLYSLSGCSRTQQPAPLAAP----------AAQVSVPAPSGEP 750
Query: 97 APASFLGTQLTLKKASDGPRTEK 119
++ T +KA P T +
Sbjct: 751 QASTPRATGRGARKAGSEPETSR 773
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 29.3 bits (64), Expect = 1.6
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 27/104 (25%)
Query: 5 PSSLPSPRGRT----QKASLLRSDPGTTCFSSHCPGHHFPLRVGKSVVLVTTSWRFSPSG 60
P P PRG K +R PG PG P +G R P G
Sbjct: 1355 PPGPPGPRGYPGIPGPKGESIRGQPGP-------PGPQGPPGIGYE-------GRQGPPG 1400
Query: 61 KVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGT 104
P PP+ GP R + +P P P P GT
Sbjct: 1401 PPGPPGPPSFPGPHRQT---------ISVPGPPGPPGPPGPPGT 1435
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 29.3 bits (64), Expect = 1.6
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 27/104 (25%)
Query: 5 PSSLPSPRGRT----QKASLLRSDPGTTCFSSHCPGHHFPLRVGKSVVLVTTSWRFSPSG 60
P P PRG K +R PG PG P +G R P G
Sbjct: 940 PPGPPGPRGYPGIPGPKGESIRGQPGP-------PGPQGPPGIGYE-------GRQGPPG 985
Query: 61 KVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGT 104
P PP+ GP R + +P P P P GT
Sbjct: 986 PPGPPGPPSFPGPHRQT---------ISVPGPPGPPGPPGPPGT 1020
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 29.3 bits (64), Expect = 1.6
Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 27/104 (25%)
Query: 5 PSSLPSPRGRT----QKASLLRSDPGTTCFSSHCPGHHFPLRVGKSVVLVTTSWRFSPSG 60
P P PRG K +R PG PG P +G R P G
Sbjct: 1120 PPGPPGPRGYPGIPGPKGESIRGQPGP-------PGPQGPPGIGYE-------GRQGPPG 1165
Query: 61 KVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGT 104
P PP+ GP R + +P P P P GT
Sbjct: 1166 PPGPPGPPSFPGPHRQT---------ISVPGPPGPPGPPGPPGT 1200
>gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]
Length = 431
Score = 29.3 bits (64), Expect = 1.6
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 62 VQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKVT 121
V+ P P GP + +TF W + + LP P AS+ A+ GP T +T
Sbjct: 382 VEQPEPTTWTGPEQVPVDTFSWDLPIKV--LPTSPTLASY---------AAPGPSTSTIT 430
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 28.1 bits (61), Expect = 3.6
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 5 PSSLPSPRGRTQKASLLRSDPGTTCFSSHCP---GHHFPLRVGKSVVLVTTSWRFSPSGK 61
P P+ RG T + + PG T H P G + + + T W F G
Sbjct: 253 PPPAPTCRGPTLLQHVFPASPGATLVGPHGPLASGQLAAFHIAAPLPVTATRWDFG-DGS 311
Query: 62 VQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGTQLTLKKA 111
+ + GP ++R HV + AL A ++ LGT + ++ A
Sbjct: 312 AEV----DAAGPAASHRYVLPGRYHV--TAVLALGAGSALLGTDVQVEAA 355
>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
Length = 4303
Score = 28.1 bits (61), Expect = 3.6
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 5 PSSLPSPRGRTQKASLLRSDPGTTCFSSHCP---GHHFPLRVGKSVVLVTTSWRFSPSGK 61
P P+ RG T + + PG T H P G + + + T W F G
Sbjct: 253 PPPAPTCRGPTLLQHVFPASPGATLVGPHGPLASGQLAAFHIAAPLPVTATRWDFG-DGS 311
Query: 62 VQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGTQLTLKKA 111
+ + GP ++R HV + AL A ++ LGT + ++ A
Sbjct: 312 AEV----DAAGPAASHRYVLPGRYHV--TAVLALGAGSALLGTDVQVEAA 355
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 28.1 bits (61), Expect = 3.6
Identities = 20/75 (26%), Positives = 31/75 (41%)
Query: 26 GTTCFSSHCPGHHFPLRVGKSVVLVTTSWRFSPSGKVQTPHPPNLDGPRRANRNTFLWTC 85
G+ C H P V+ + S+ PSG+ +P PP L GP ++ + +
Sbjct: 159 GSRCHFIHNPSEDLAAPGHPPVLRQSISFSGLPSGRRTSPPPPGLAGPSLSSSSFSPSSS 218
Query: 86 HVGIPDLPALPAPAS 100
DLP P+ S
Sbjct: 219 PPPPGDLPLSPSAFS 233
>gi|239755857 PREDICTED: hypothetical protein [Homo sapiens]
Length = 82
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 2 RALPS-SLPSPRGRTQKASLLRSDPGT 27
R LP S P RGR++ A LR DPGT
Sbjct: 48 RGLPRRSRPGARGRSRIADRLRGDPGT 74
>gi|239750361 PREDICTED: hypothetical protein XP_002347406 [Homo
sapiens]
Length = 82
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 2 RALPS-SLPSPRGRTQKASLLRSDPGT 27
R LP S P RGR++ A LR DPGT
Sbjct: 48 RGLPRRSRPGARGRSRIADRLRGDPGT 74
>gi|239744665 PREDICTED: hypothetical protein XP_002343232 [Homo
sapiens]
Length = 82
Score = 28.1 bits (61), Expect = 3.6
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 2 RALPS-SLPSPRGRTQKASLLRSDPGT 27
R LP S P RGR++ A LR DPGT
Sbjct: 48 RGLPRRSRPGARGRSRIADRLRGDPGT 74
>gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens]
Length = 566
Score = 28.1 bits (61), Expect = 3.6
Identities = 31/121 (25%), Positives = 40/121 (33%), Gaps = 16/121 (13%)
Query: 5 PSSLPSPRGRTQKASLLRSDPGTTCFSSHCPGHHFPLRVGKSVVLVTTSWRFSPSGKVQT 64
PS PSP + LR C SS FP G + + S +P+
Sbjct: 104 PSPSPSPSPAKPAGAELRRAFLERCLSSPVSAESFP---GGAAAVAAFSCSVAPAA---A 157
Query: 65 PHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKVTQDL 124
P P FL P+ P PA +LK+A+ G R K D
Sbjct: 158 PTPGE----------QFLLPLRAPFPEPALQPDPAPLSAALQSLKRAAGGERRGKAPTDC 207
Query: 125 A 125
A
Sbjct: 208 A 208
>gi|154146262 Fc fragment of IgG binding protein [Homo sapiens]
Length = 5405
Score = 28.1 bits (61), Expect = 3.6
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 35 PGHHFPLRVGKSVVLVTTSWRFSPSGKVQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPA 94
PG+++ L G + ++ P Q P+ G + N N F + +PD P
Sbjct: 2580 PGNYYQLMCG-----LCGNYNGDPKDDFQKPN-----GSQAGNANEFGNSWEEVVPDSPC 2629
Query: 95 LPAPASFLGTQLTLKKASDGPRTEKVTQ 122
LP P G++ + P EK Q
Sbjct: 2630 LPPPTCPPGSEGCIPSEECPPELEKKYQ 2657
>gi|19923901 hypothetical protein LOC91523 [Homo sapiens]
Length = 432
Score = 27.7 bits (60), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 68 PNLDGPRRANRNTFLWTCHVGIPDLPALPAP 98
P ++GP +ANRN H +P P LP+P
Sbjct: 273 PRVEGPPQANRN------HPALPLSPPLPSP 297
>gi|224922839 hypothetical protein LOC138311 [Homo sapiens]
Length = 431
Score = 27.3 bits (59), Expect = 6.1
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 91 DLPALPAPASFLGTQLTLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQQKD 147
DLP+LPA +G L + +D + +V+ A+ W ++ F+L LSLQ+K+
Sbjct: 166 DLPSLPA---LVGQVLLM---ADFNKDNRVSLAEAKSVWALLQRNEFLLLLSLQEKE 216
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 27.3 bits (59), Expect = 6.1
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 63 QTPHPPNLDGPRRANRNTFLWTCHVGIPDLPA-------LPAPASFLGTQL--TLKKASD 113
Q P PP GP A+ + T G P PAP +G+ +L +A
Sbjct: 32 QQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPSVGSSFFSSLSQAVK 91
Query: 114 GPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWRGAEVV 158
D P R+ + +L + D +KC+RG +V+
Sbjct: 92 QTAASAGLVDAPAPAPAAARKAKVLLVVDEPHADWAKCFRGKKVL 136
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 27.3 bits (59), Expect = 6.1
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 63 QTPHPPNLDGPRRANRNTFLWTCHVGIPDLPA-------LPAPASFLGTQL--TLKKASD 113
Q P PP GP A+ + T G P PAP +G+ +L +A
Sbjct: 32 QQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAPQPAPTPSVGSSFFSSLSQAVK 91
Query: 114 GPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQQKDLSKCWRGAEVV 158
D P R+ + +L + D +KC+RG +V+
Sbjct: 92 QTAASAGLVDAPAPAPAAARKAKVLLVVDEPHADWAKCFRGKKVL 136
>gi|153792764 hypothetical protein LOC57624 [Homo sapiens]
Length = 653
Score = 26.9 bits (58), Expect = 8.0
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 55 RFSPSGKVQTPHPPNLDGPRRANRNTFLWTCHVG-----IPDLPALPAPASFLGTQLTLK 109
R SPS TP P + DG + N + G P P + F + L+
Sbjct: 467 RSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLR 526
Query: 110 KASDGPRT----EKVTQDL 124
K+S G R+ EK T++L
Sbjct: 527 KSSSGRRSKEPAEKSTEEL 545
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 26.9 bits (58), Expect = 8.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 46 SVVLVTTSWRFSPSGKVQTPHPPNLDGPRRANRNTFLWTCH 86
SV++ TT+ + S + T PPNL P + T+ T H
Sbjct: 5666 SVLVTTTNVLGTTSPEPVTSSPPNLSSPTQERLTTYKDTAH 5706
>gi|239753409 PREDICTED: similar to hCG1811893 [Homo sapiens]
Length = 669
Score = 26.9 bits (58), Expect = 8.0
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 55 RFSPSGKVQTPHPPNLDGPRRANRNTFLWTCHVG-----IPDLPALPAPASFLGTQLTLK 109
R SPS TP P + DG + N + G P P + F + L+
Sbjct: 467 RSSPSVPHSTPRPVSQDGAKMVNAAVNTYGAAPGGSRSRTPTSPLEELTSLFSSGRSLLR 526
Query: 110 KASDGPRT----EKVTQDL 124
K+S G R+ EK T++L
Sbjct: 527 KSSSGRRSKEPAEKSTEEL 545
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,982,026
Number of Sequences: 37866
Number of extensions: 415292
Number of successful extensions: 1068
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 38
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.