Search of human proteins with 238624193

Search of human proteins with 238624193

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|238624193 hypothetical protein LOC221545 isoform 2 [Homo
sapiens]
         (181 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|238624193 hypothetical protein LOC221545 isoform 2 [Homo sapi...   379   e-106
gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo sapi...   332   1e-91
gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo sapi...   332   1e-91
gi|209862851 plastin 3 [Homo sapiens]                                  29   1.9  
gi|7549809 plastin 3 [Homo sapiens]                                    29   1.9  
gi|41406089 SRY-box 13 [Homo sapiens]                                  29   2.5  
gi|219842266 usherin isoform B [Homo sapiens]                          28   4.3  
gi|153792042 G protein-coupled receptor 178 [Homo sapiens]             28   5.6  
gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens]    27   7.3  
gi|23346427 hypothetical protein LOC84221 isoform 2 [Homo sapiens]     27   7.3  
gi|45505180 per1-like domain containing 1 [Homo sapiens]               27   9.6  

>gi|238624193 hypothetical protein LOC221545 isoform 2 [Homo
           sapiens]
          Length = 181

 Score =  379 bits (974), Expect = e-106
 Identities = 181/181 (100%), Positives = 181/181 (100%)

Query: 1   MYQPSRGAARRLGPCLRAYQARPQLPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYI 60
           MYQPSRGAARRLGPCLRAYQARPQLPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYI
Sbjct: 1   MYQPSRGAARRLGPCLRAYQARPQLPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYI 60

Query: 61  LSLTLCRFLAWNYFAHLRLEVLQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHY 120
           LSLTLCRFLAWNYFAHLRLEVLQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHY
Sbjct: 61  LSLTLCRFLAWNYFAHLRLEVLQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHY 120

Query: 121 RTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSK 180
           RTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSK
Sbjct: 121 RTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSK 180

Query: 181 P 181
           P
Sbjct: 181 P 181


>gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo
           sapiens]
          Length = 496

 Score =  332 bits (851), Expect = 1e-91
 Identities = 158/160 (98%), Positives = 159/160 (99%)

Query: 22  RPQLPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLAWNYFAHLRLEV 81
           R +LPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLAWNYFAHLRLEV
Sbjct: 337 RQELPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLAWNYFAHLRLEV 396

Query: 82  LQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHYRTYDAYSTFYLNSSGLICRHR 141
           LQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHYRTYDAYSTFYLNSSGLICRHR
Sbjct: 397 LQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHYRTYDAYSTFYLNSSGLICRHR 456

Query: 142 LDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSKP 181
           LDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSKP
Sbjct: 457 LDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSKP 496



 Score = 54.7 bits (130), Expect = 4e-08
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1  MYQPSRGAARRLGPCLRAYQARPQL 25
          MYQPSRGAARRLGPCLRAYQARPQ+
Sbjct: 1  MYQPSRGAARRLGPCLRAYQARPQV 25


>gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo
           sapiens]
          Length = 315

 Score =  332 bits (851), Expect = 1e-91
 Identities = 158/160 (98%), Positives = 159/160 (99%)

Query: 22  RPQLPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLAWNYFAHLRLEV 81
           R +LPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLAWNYFAHLRLEV
Sbjct: 156 RQELPKLFLQSHDYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLAWNYFAHLRLEV 215

Query: 82  LQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHYRTYDAYSTFYLNSSGLICRHR 141
           LQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHYRTYDAYSTFYLNSSGLICRHR
Sbjct: 216 LQLTRHPENWTLQARWRLVGLPVHLLFLRFYKRDKDEHYRTYDAYSTFYLNSSGLICRHR 275

Query: 142 LDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSKP 181
           LDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSKP
Sbjct: 276 LDKLMPSHSPPTPVKKLLVGALVALGLSEPEPDLNLCSKP 315



 Score = 54.3 bits (129), Expect = 6e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)

Query: 1  MYQPSRGAARRLGPCLRAYQARPQ 24
          MYQPSRGAARRLGPCLRAYQARPQ
Sbjct: 1  MYQPSRGAARRLGPCLRAYQARPQ 24


>gi|209862851 plastin 3 [Homo sapiens]
          Length = 630

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 116 KDEHYRTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKL 158
           KDE     +A++   LNS+G IC + L +L    + P P  K+
Sbjct: 11  KDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKV 53


>gi|7549809 plastin 3 [Homo sapiens]
          Length = 630

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 116 KDEHYRTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKL 158
           KDE     +A++   LNS+G IC + L +L    + P P  K+
Sbjct: 11  KDELDELKEAFAKVDLNSNGFICDYELHELFKEANMPLPGYKV 53


>gi|41406089 SRY-box 13 [Homo sapiens]
          Length = 622

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 15/33 (45%), Positives = 16/33 (48%)

Query: 149 HSPPTPVKKLLVGALVALGLSEPEPDLNLCSKP 181
           HSPP PV K          L EP   LNL +KP
Sbjct: 267 HSPPAPVVKRPGAMATHHPLQEPSQPLNLTAKP 299


>gi|219842266 usherin isoform B [Homo sapiens]
          Length = 5202

 Score = 28.1 bits (61), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 116  KDEHYRTYDAYSTFYLNSSGLICRHRLDKLMPSH 149
            K  H    + Y  F LNS+G+ C  R+ +  P+H
Sbjct: 3201 KPGHRCCEEKYIPFVLNSTGVCCGGRIQEAQPNH 3234


>gi|153792042 G protein-coupled receptor 178 [Homo sapiens]
          Length = 612

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 34  DYSLYSLDVEFINEILNIRTKGRTWYILSLTLCRFLAWN--YFAHLRLEVLQLTRHP--- 88
           +Y+ Y++ V F +  L I+    TW   +    R   W   +F  L   V  L  H    
Sbjct: 278 NYTQYTVIVGFEHLKLPIKGMNFTWKTYNPAFSRLEIWFRFFFVVLTFIVTCLFAHSLRK 337

Query: 89  ---ENWTLQARWRLVGLPVHLLF 108
               +W ++ +W  V LP+ LL+
Sbjct: 338 FSMRDWGIEQKWMSVLLPLLLLY 360


>gi|218749820 hypothetical protein LOC84221 isoform 1 [Homo sapiens]
          Length = 340

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 112 YKRDKDEHYRTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKLLV 160
           Y RD       + A+S F +N+ G++ +    +  P HS P  ++KL++
Sbjct: 266 YSRD------VHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVI 308


>gi|23346427 hypothetical protein LOC84221 isoform 2 [Homo sapiens]
          Length = 186

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 112 YKRDKDEHYRTYDAYSTFYLNSSGLICRHRLDKLMPSHSPPTPVKKLLV 160
           Y RD       + A+S F +N+ G++ +    +  P HS P  ++KL++
Sbjct: 112 YSRD------VHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVI 154


>gi|45505180 per1-like domain containing 1 [Homo sapiens]
          Length = 320

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 79  LEVLQLTRHPEN-WTLQAR--WRLVGLPVHLLFLRFYKRD 115
           L +L+L   P   W L A   W +  +PVH+LF  F + D
Sbjct: 266 LSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDD 305


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.141    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,789,418
Number of Sequences: 37866
Number of extensions: 331559
Number of successful extensions: 925
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 13
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.