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Search of human proteins with 23110980
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23110980 immunoglobulin lambda-like polypeptide 1 isoform b
precursor [Homo sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23110980 immunoglobulin lambda-like polypeptide 1 isoform b p... 175 8e-45
gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a p... 144 1e-35
gi|239755739 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|194272140 dendrin [Homo sapiens] 32 0.11
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap... 32 0.14
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 31 0.24
gi|18959276 forkhead box D4-like 1 [Homo sapiens] 31 0.24
gi|24308352 DMRT-like family B with proline-rich C-terminal, 1 [... 30 0.41
gi|239757601 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239752103 PREDICTED: hypothetical protein XP_002348112 [Homo ... 30 0.54
gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo ... 30 0.54
gi|31442420 shroom family member 1 [Homo sapiens] 30 0.54
gi|239753797 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 29 0.92
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 29 0.92
gi|239757695 PREDICTED: hypothetical protein XP_002345523 [Homo ... 28 1.2
gi|239752180 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239746703 PREDICTED: hypothetical protein XP_002343814 [Homo ... 28 1.2
gi|239750075 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo ... 28 1.6
gi|239744384 PREDICTED: hypothetical protein XP_002343133 [Homo ... 28 1.6
gi|157311635 FAM83H [Homo sapiens] 28 1.6
gi|239753506 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo ... 28 2.0
gi|239742057 PREDICTED: hypothetical protein XP_002342381 [Homo ... 28 2.0
gi|7661936 scaffold attachment factor B2 [Homo sapiens] 28 2.0
gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens] 28 2.0
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 27 2.7
gi|239757289 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
>gi|23110980 immunoglobulin lambda-like polypeptide 1 isoform b
precursor [Homo sapiens]
Length = 84
Score = 175 bits (443), Expect = 8e-45
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR 60
MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR
Sbjct: 1 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR 60
Query: 61 SSLRSRWGRSAQGHPLGHSVPAVL 84
SSLRSRWGRSAQGHPLGHSVPAVL
Sbjct: 61 SSLRSRWGRSAQGHPLGHSVPAVL 84
>gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a
precursor [Homo sapiens]
Length = 213
Score = 144 bits (364), Expect = 1e-35
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR 60
MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR
Sbjct: 1 MRPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSR 60
Query: 61 SSLRSRWGR 69
SSLRSRWGR
Sbjct: 61 SSLRSRWGR 69
>gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 14 GEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRSSLRSRWGRSAQG 73
G+P P LR W G G RP+ ++ AL G G + LR R GR+A G
Sbjct: 129 GQPFPQLRSHWQAPRQGWPAQEGGGRRPSRREEAAALAGG--GKRTAPGLRGRGGRAAAG 186
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 2 RPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLL-RPT--AASQSRALGPGAPGGS 58
+PG G+GG G PG + + +LGL L PT + + +ALGP A G
Sbjct: 522 QPGGGRGGEAEGGRPGDSTLEERTFRILGLPAPEVNLRDAPTQPGSPEHQALGPAASGAQ 581
Query: 59 SRS 61
R+
Sbjct: 582 GRA 584
>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
sapiens]
Length = 501
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 31 LAVVTHGLLRPTAASQSRALGP------GAPGGSSRSSLRSRWGRSA 71
LA VT L+PTAA+++ LG G PGGS+ ++ + WG +A
Sbjct: 256 LAGVTEEALKPTAATRTTLLGGKEAQALGVPGGSAETT-EAEWGPAA 301
>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 14 GEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRSSLRSRWGRSAQG 73
G+P P LR W G G RP+ ++ AL G G + R R GR+A G
Sbjct: 129 GQPFPQLRSHWQAPRQGWPAQEGGGRRPSRREEAAALAGG--GKRTAPGRRGRGGRAAAG 186
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 14 GEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRSSLRS 65
GEPG L P LL A + L +A+S + +LG G PG SS S RS
Sbjct: 925 GEPGARLSPPAPPLLASAASSSSLL---SASSPASSLGSGTPGTSSDSRQRS 973
>gi|18959276 forkhead box D4-like 1 [Homo sapiens]
Length = 408
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 38 LLRPTAASQSRALGPGAPGGSSRSSLRSRWGRSAQGHPLG 77
L RP++ S + A A GG R LRS GR A P+G
Sbjct: 355 LQRPSSLSDNFAATAAASGGGLRQRLRSHQGRGAGRAPVG 394
>gi|24308352 DMRT-like family B with proline-rich C-terminal, 1
[Homo sapiens]
Length = 342
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 9 GLEAPGE--PGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSS 59
G EA G PGP L R P+ + + T +RP + RALGP PGGSS
Sbjct: 163 GAEAAGSGYPGP-LDLRRPMRTVPGPLFTD-FVRPLNINPDRALGPEYPGGSS 213
>gi|239757601 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 4 GTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLR 40
GT GLE E GP W LLLLG H L R
Sbjct: 171 GTRSEGLEERREAGPGQDSGWGLLLLGRLPRAHTLTR 207
>gi|239752103 PREDICTED: hypothetical protein XP_002348112 [Homo
sapiens]
Length = 308
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 4 GTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLR 40
GT GLE E GP W LLLLG H L R
Sbjct: 171 GTRSEGLEERREAGPGQDSGWGLLLLGRLPRAHTLTR 207
>gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo
sapiens]
Length = 452
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 4 GTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLR 40
GT GLE E GP W LLLLG H L R
Sbjct: 171 GTRSEGLEERREAGPGQDSGWGLLLLGRLPRAHTLTR 207
>gi|31442420 shroom family member 1 [Homo sapiens]
Length = 847
Score = 29.6 bits (65), Expect = 0.54
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 5 TGQGGLEAPGEPGPNLRQRWPLL--LLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRSS 62
+G E PG PGP RQ PLL L A + P + SRA G+ R
Sbjct: 93 SGPQPTEVPGTPGPLNRQATPLLYALAAEAEAAAQAVEPPSPPASRAAYRQRLQGAQRRV 152
Query: 63 LRSRWGRSAQGHPLGHSVPAVL 84
LR S Q L S+PA L
Sbjct: 153 LRE---TSFQRKELRMSLPARL 171
>gi|239753797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 864
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 16 PGPNLRQRWPLLLLGLAVVTHGL---LRPTAASQSRALGPGAPGGSSRSSLRSRWGRSAQ 72
PGP RQR+ + G AV+ L LR S + P A GG +LR R S+
Sbjct: 104 PGPRARQRFHRMATGWAVLGSPLGHPLRGCPPSPAAWPAPPAVGGGCTVTLRIRPSESST 163
Query: 73 G 73
G
Sbjct: 164 G 164
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 28.9 bits (63), Expect = 0.92
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 13 PGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRAL--GPGAPGGSSRSSLRSRWGRS 70
P + P R R + LAV G PT +S GPGAPGG R+R R+
Sbjct: 32 PPDRSPTPRSRVSPGVTSLAV---GPGNPTRCQRSGVPYEGPGAPGGQQLRKSRARLPRT 88
Query: 71 AQG 73
QG
Sbjct: 89 RQG 91
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 28.9 bits (63), Expect = 0.92
Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 4 GTGQGGLEAPG-EPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRSS 62
GT G L PG EP LR R R + R GP PGG SS
Sbjct: 24 GTPDGSLPNPGPEPAKGLRSR----------PARAAARAPGEGRRRRPGPSGPGGRRDSS 73
Query: 63 LRSR 66
++ R
Sbjct: 74 IQRR 77
>gi|239757695 PREDICTED: hypothetical protein XP_002345523 [Homo
sapiens]
Length = 236
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 22 QRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRS----SLRSRWGRSAQGHPLG 77
+ WP L +++V + P ++ A G GAPG S R+ +L SR G +A+ PLG
Sbjct: 101 EAWPRPSL-ISMVNVVFILPPGSAVPTATGSGAPGSSERATGPPALFSR-GLAAKPRPLG 158
Query: 78 HS 79
S
Sbjct: 159 PS 160
>gi|239752180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 22 QRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRS----SLRSRWGRSAQGHPLG 77
+ WP L +++V + P ++ A G GAPG S R+ +L SR G +A+ PLG
Sbjct: 101 EAWPRPSL-ISMVNVVFILPPGSAVPTATGSGAPGSSERATGPPALFSR-GLAAKPRPLG 158
Query: 78 HS 79
S
Sbjct: 159 PS 160
>gi|239746703 PREDICTED: hypothetical protein XP_002343814 [Homo
sapiens]
Length = 236
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 22 QRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRS----SLRSRWGRSAQGHPLG 77
+ WP L +++V + P ++ A G GAPG S R+ +L SR G +A+ PLG
Sbjct: 101 EAWPRPSL-ISMVNVVFILPPGSAVPTATGSGAPGSSERATGPPALFSR-GLAAKPRPLG 158
Query: 78 HS 79
S
Sbjct: 159 PS 160
>gi|239750075 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 38 LLRPTAASQSRALGPGAPGGSSRSSLRSRWGRSAQGHPLGHSVPA 82
LL P A+ S A+ GG R SL++ GRS+ G +VPA
Sbjct: 202 LLGPLEAAASHAVNSWVGGGGDRESLKTLSGRSSIS--CGTNVPA 244
>gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo
sapiens]
Length = 894
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 16 PGPNLRQRWPLLLLGLAVVTHGLLRPTAA---SQSRALGPGAPGGSSRSSLRSRWGRSAQ 72
PGP RQR+ + G AV+ L P S + P A GG +LR R S+
Sbjct: 104 PGPRARQRFHRMATGWAVLGSPLGHPLQGCPPSPAAWPAPPAVGGGCTVTLRIRPSESST 163
Query: 73 G 73
G
Sbjct: 164 G 164
>gi|239744384 PREDICTED: hypothetical protein XP_002343133 [Homo
sapiens]
Length = 263
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 38 LLRPTAASQSRALGPGAPGGSSRSSLRSRWGRSAQGHPLGHSVPA 82
LL P A+ S A+ GG R SL++ GRS+ G +VPA
Sbjct: 202 LLGPLEAAASHAVNSWVGGGGDRESLKTLSGRSSIS--CGTNVPA 244
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 6 GQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRSSLRS 65
G GLE G P PNL QR+P A G P A ++ G P G R+ LR
Sbjct: 530 GPRGLEPSGAPRPNLTQRFPC----QAAARPG---PDPAPEAEPERRGGPEG--RAGLR- 579
Query: 66 RW 67
RW
Sbjct: 580 RW 581
>gi|239753506 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 32 AVVTHGLLRPTAASQSRALGPGAPGGSSRSSLRSRWGRSAQGHPLGHSVPAVL 84
AV GLL AS GPG+ G S R R R + +G P +L
Sbjct: 54 AVAKSGLLGTWRASPRPGRGPGSAGRCGPSEARHREARVPRRQEVGPRTPRLL 106
>gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo
sapiens]
Length = 246
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 32 AVVTHGLLRPTAASQSRALGPGAPGGSSRSSLRSRWGRSAQGHPLGHSVPAVL 84
AV GLL AS GPG+ G S R R R + +G P +L
Sbjct: 104 AVAKSGLLGTWRASPRPGRGPGSAGRCGPSEARHREARVPRRQEVGPRTPRLL 156
>gi|239742057 PREDICTED: hypothetical protein XP_002342381 [Homo
sapiens]
Length = 196
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 32 AVVTHGLLRPTAASQSRALGPGAPGGSSRSSLRSRWGRSAQGHPLGHSVPAVL 84
AV GLL AS GPG+ G S R R R + +G P +L
Sbjct: 54 AVAKSGLLGTWRASPRPGRGPGSAGRCGPSEARHREARVPRRQEVGPRTPRLL 106
>gi|7661936 scaffold attachment factor B2 [Homo sapiens]
Length = 953
Score = 27.7 bits (60), Expect = 2.0
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 51 GPGAPGG-SSRSSLRSRWGRSAQGHPLGHSVP 81
GP PG +SR + R G + GH GH VP
Sbjct: 887 GPSGPGHMASRGGVAGRGGFAQGGHSQGHVVP 918
>gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens]
Length = 222
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 9 GLEAPGEPG---PNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALG 51
GL+ G G P L RWPL L L T GL+ S S LG
Sbjct: 132 GLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLG 177
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 27.3 bits (59), Expect = 2.7
Identities = 29/81 (35%), Positives = 33/81 (40%), Gaps = 19/81 (23%)
Query: 2 RPGTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLRPTAASQSRALG--PGAPGGSS 59
+P T G L G P LR W RP ASQ+R G P PG +
Sbjct: 79 QPATRSGRLGVWGGP---LRHSWAP-------------RPRQASQTRGGGGGPSLPGPAG 122
Query: 60 RSSLRSRWGRSAQGH-PLGHS 79
R S RSR A+G P G S
Sbjct: 123 RPSGRSRSRVGARGRLPSGGS 143
>gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]
Length = 545
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 14/53 (26%)
Query: 15 EPGPNLRQ-RWPLLLLGLAVVTHGLLRPTAASQSRALGPGAPGGSSRSSLRSR 66
+PGP LRQ W L +P + Q A GPGA G RS ++ R
Sbjct: 468 KPGPRLRQWLWKL-------------QPQSREQRGAGGPGAGVGGGRSDVQPR 507
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,632,434
Number of Sequences: 37866
Number of extensions: 234644
Number of successful extensions: 1022
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 87
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.