Search of human proteins with 223718097

Search of human proteins with 223718097

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|223718097 oxidase (cytochrome c) assembly 1-like [Homo
sapiens]
         (495 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|223718097 oxidase (cytochrome c) assembly 1-like [Homo sapiens]   1007   0.0  
gi|28395049 mitochondrial COX18 [Homo sapiens]                         99   9e-21
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    31   2.3  
gi|19111150 angiomotin isoform 2 [Homo sapiens]                        31   2.3  
gi|166064029 angiomotin isoform 1 [Homo sapiens]                       31   2.3  
gi|94400919 WD repeat domain 90 [Homo sapiens]                         31   3.0  
gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Ho...    30   3.9  
gi|37577148 NCK interacting protein with SH3 domain isoform 2 [H...    30   3.9  
gi|47419936 SFRS protein kinase 1 [Homo sapiens]                       30   5.0  
gi|20143482 melanoma antigen family E, 1 [Homo sapiens]                30   5.0  
gi|45827771 autoantigen RCD8 [Homo sapiens]                            30   5.0  
gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens]      30   6.6  
gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens]      30   6.6  
gi|119220605 ubiquitin specific protease 10 [Homo sapiens]             30   6.6  
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]               29   8.6  
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]               29   8.6  
gi|189571674 cadherin-like 23 isoform 1 precursor [Homo sapiens]       29   8.6  
gi|31317236 GSK-3 binding protein FRAT1 [Homo sapiens]                 29   8.6  
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]             29   8.6  

>gi|223718097 oxidase (cytochrome c) assembly 1-like [Homo sapiens]
          Length = 495

 Score = 1007 bits (2603), Expect = 0.0
 Identities = 495/495 (100%), Positives = 495/495 (100%)

Query: 1   MVTWLYRFLPTSNMAAKLRSLLPPDLRLQFWLHARLQKCFLSRGCGSYCAGAKASPLPGK 60
           MVTWLYRFLPTSNMAAKLRSLLPPDLRLQFWLHARLQKCFLSRGCGSYCAGAKASPLPGK
Sbjct: 1   MVTWLYRFLPTSNMAAKLRSLLPPDLRLQFWLHARLQKCFLSRGCGSYCAGAKASPLPGK 60

Query: 61  MAMGLMCGRRELLRLLQSGRRVHSVAGPSQWLGKPLTTRLLFPAAPCCCRPHYLFLAASG 120
           MAMGLMCGRRELLRLLQSGRRVHSVAGPSQWLGKPLTTRLLFPAAPCCCRPHYLFLAASG
Sbjct: 61  MAMGLMCGRRELLRLLQSGRRVHSVAGPSQWLGKPLTTRLLFPAAPCCCRPHYLFLAASG 120

Query: 121 PRSLSTSAISFAEVQVQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAELGLGSYT 180
           PRSLSTSAISFAEVQVQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAELGLGSYT
Sbjct: 121 PRSLSTSAISFAEVQVQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAELGLGSYT 180

Query: 181 PVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFS 240
           PVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFS
Sbjct: 181 PVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFS 240

Query: 241 SRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANL 300
           SRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANL
Sbjct: 241 SRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANL 300

Query: 301 PVPSLQTGGLWWFQDLTVSDPIYILPLAVTATMWAVLELGAETGVQSSDLQWMRNVIRMM 360
           PVPSLQTGGLWWFQDLTVSDPIYILPLAVTATMWAVLELGAETGVQSSDLQWMRNVIRMM
Sbjct: 301 PVPSLQTGGLWWFQDLTVSDPIYILPLAVTATMWAVLELGAETGVQSSDLQWMRNVIRMM 360

Query: 361 PLITLPITMHFPTAVFMYWLSSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREG 420
           PLITLPITMHFPTAVFMYWLSSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREG
Sbjct: 361 PLITLPITMHFPTAVFMYWLSSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREG 420

Query: 421 FLESFKKGWKNAEMTRQLREREQRMRNQLELAARGPLRQTFTHNPLLQPGKDNPPNIPSS 480
           FLESFKKGWKNAEMTRQLREREQRMRNQLELAARGPLRQTFTHNPLLQPGKDNPPNIPSS
Sbjct: 421 FLESFKKGWKNAEMTRQLREREQRMRNQLELAARGPLRQTFTHNPLLQPGKDNPPNIPSS 480

Query: 481 SSKPKSKYPWHDTLG 495
           SSKPKSKYPWHDTLG
Sbjct: 481 SSKPKSKYPWHDTLG 495


>gi|28395049 mitochondrial COX18 [Homo sapiens]
          Length = 333

 Score = 99.0 bits (245), Expect = 9e-21
 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 21/251 (8%)

Query: 176 LGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFAR-CLIFPLIVTGQREAARIHNHLP 234
           L + +PV + + +L  +H   GLPWWG+I   TV  R  +  PL        A++ N  P
Sbjct: 58  LAASSPVRVAEEVLLGVHAATGLPWWGSILLSTVALRGAVTLPLAAYQHYILAKVENLQP 117

Query: 235 EIQKFSSRI-REAKLAGDHIEYYKASSEMALYQKKHGI--KLY--------KPLILPVTQ 283
           EI+  +  + +E  +  + + + K  + +   +    +  +LY        K  +L   Q
Sbjct: 118 EIKTIARHLNQEVAVRANQLGWSKRDARLTYLKNMRRLISELYVRDNCHPFKATVLVWIQ 177

Query: 284 APIFISFFIALREMANLPVPS--------LQTGGLWWFQDLTVSDPIYILPLAVTATMWA 335
            P++I    ALR ++     S        L TGG+ WF DLT  D  +ILP++V      
Sbjct: 178 LPMWIFMSFALRNLSTGAAHSEGFSVQEQLATGGILWFPDLTAPDSTWILPISVGVINLL 237

Query: 336 VLELGAETGVQSSDLQ-WMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFSLVQVSCLR 394
           ++E+ A   +  S  Q ++   +R M ++ +PI    P+++ +YWL S+   L Q   LR
Sbjct: 238 IVEICALQKIGMSRFQTYITYFVRAMSVLMIPIAATVPSSIVLYWLCSSFVGLSQNLLLR 297

Query: 395 IPAVRTVLKIP 405
            P  R + +IP
Sbjct: 298 SPGFRQLCRIP 308


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 116 LAASGPRSLSTSAISFAEVQVQAPPVVAATPSPTAVPEVASGETADVVQTAA 167
           LAASGP S + S        V  P +  A PSP AVP  A G    + + AA
Sbjct: 361 LAASGPASTAAS-------MVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAA 405


>gi|19111150 angiomotin isoform 2 [Homo sapiens]
          Length = 675

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 121 PRSLSTSAISFAEVQVQAP---PVVAATPSPTAVPEVASGE 158
           P     +A + A  Q QAP   P VA TP+PT  P VA  E
Sbjct: 577 PVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPAVAQAE 617


>gi|166064029 angiomotin isoform 1 [Homo sapiens]
          Length = 1084

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 121  PRSLSTSAISFAEVQVQAP---PVVAATPSPTAVPEVASGE 158
            P     +A + A  Q QAP   P VA TP+PT  P VA  E
Sbjct: 986  PVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPAVAQAE 1026


>gi|94400919 WD repeat domain 90 [Homo sapiens]
          Length = 1748

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 39  CFLSRGCGSYCAGAKASPLPGKMAMGLMCGRRELLRLLQSGRRVHSVAGPSQWLGKPLTT 98
           CF     G+  A    +P+P +MA  +  G     R +       S+  PS+ + K    
Sbjct: 183 CFEPAISGAQWAKLPVTPMPREMAFPVPKGESWHDRYIHVRFPSESLKVPSKPIEKS--- 239

Query: 99  RLLFPAAPCCCRPHYLFLAASGPRSLSTSAISFAEVQVQAPPVVAATPSPTA 150
                     C P    L   GP+ L     S   V+    PVV  TPSPTA
Sbjct: 240 ----------CSPPEAVLLGPGPQPLPCPVASSKPVRFSVSPVV-QTPSPTA 280


>gi|7705266 NCK interacting protein with SH3 domain isoform 1 [Homo
           sapiens]
          Length = 722

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 135 QVQAPPVVAATPSPTAVPEVASGETA 160
           QVQ PP  A+ P P A  EVA+G T+
Sbjct: 257 QVQPPPSKASAPEPPAEEEVATGTTS 282


>gi|37577148 NCK interacting protein with SH3 domain isoform 2 [Homo
           sapiens]
          Length = 715

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 135 QVQAPPVVAATPSPTAVPEVASGETA 160
           QVQ PP  A+ P P A  EVA+G T+
Sbjct: 250 QVQPPPSKASAPEPPAEEEVATGTTS 275


>gi|47419936 SFRS protein kinase 1 [Homo sapiens]
          Length = 655

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 426 KKGWKNAEMTRQLREREQRMRNQLELAARGPLRQTFTHNPLLQPGKDNPPN 476
           KK  + AE+  +  +  + M  +     + P +Q  + +P+ +P K+NPPN
Sbjct: 273 KKQKRQAELLEKRMQEIEEMEKESGPGQKRPNKQEESESPVERPLKENPPN 323


>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
          Length = 957

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 18/53 (33%), Positives = 22/53 (41%)

Query: 116 LAASGPRSLSTSAISFAEVQVQAPPVVAATPSPTAVPEVASGETADVVQTAAE 168
           LAAS  R+ S    S  E     PP  +  PS +  P    G +  V  TA E
Sbjct: 130 LAASEGRNTSRPPTSSEEPSTSVPPTASEVPSTSLPPTPGEGTSTSVPPTAYE 182


>gi|45827771 autoantigen RCD8 [Homo sapiens]
          Length = 1401

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 116 LAASGPRSL--STSAISFAEVQVQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAE 173
           L   GP  +  +TSA+S    +V+   +  A+PS T  P+V S  +  + Q   E +   
Sbjct: 692 LTPKGPGQVPTATSALSLELQEVEPLGLPQASPSRTRSPDVISSASTALSQDIPEIASEA 751

Query: 174 L--GLGSYTPVGL 184
           L  G GS  P GL
Sbjct: 752 LSRGFGSSAPEGL 764


>gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens]
          Length = 364

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 312 WFQDLTVSDPIYILPLAVTATMWAVLELGAETGVQSSDLQWMRNVIRM--MPLITLPITM 369
           WF D+ ++  + I+P  VT T   V  +   T V++S        + M  +P  T+P TM
Sbjct: 112 WFNDMKITVSLEIVPPKVTTTP-IVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTM 170

Query: 370 HFPT 373
             PT
Sbjct: 171 SIPT 174


>gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens]
          Length = 364

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 312 WFQDLTVSDPIYILPLAVTATMWAVLELGAETGVQSSDLQWMRNVIRM--MPLITLPITM 369
           WF D+ ++  + I+P  VT T   V  +   T V++S        + M  +P  T+P TM
Sbjct: 112 WFNDMKITVSLEIVPPKVTTTP-IVTTVPTVTTVRTSTTVPTTTTVPMTTVPTTTVPTTM 170

Query: 370 HFPT 373
             PT
Sbjct: 171 SIPT 174


>gi|119220605 ubiquitin specific protease 10 [Homo sapiens]
          Length = 798

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 264 LYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVP 303
           +Y     I LY  +  P T  P+  SF   + E  N+PVP
Sbjct: 439 MYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNEFTNMPVP 478


>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
          Length = 2416

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 134 VQVQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAELGLGSYTPVG 183
           +  Q  P VAA P       V SGET  +++   E         +YTPVG
Sbjct: 701 IVTQVVPGVAAVPVEEETTAVPSGETTAILEFTTEPENQTEWEPAYTPVG 750


>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
          Length = 2317

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 134 VQVQAPPVVAATPSPTAVPEVASGETADVVQTAAEQSFAELGLGSYTPVG 183
           +  Q  P VAA P       V SGET  +++   E         +YTPVG
Sbjct: 701 IVTQVVPGVAAVPVEEETTAVPSGETTAILEFTTEPENQTEWEPAYTPVG 750


>gi|189571674 cadherin-like 23 isoform 1 precursor [Homo sapiens]
          Length = 3354

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 14/84 (16%)

Query: 105  APCCCRPHYLFLAASGPRSLSTSAISFAEVQVQAPPVVAATPSPTAVPEVASGETADV-- 162
            AP   +PHY  L   GP +L+TS I+   + +         P+ T    + +G   +   
Sbjct: 1631 APMFQQPHYEVLLDEGPDTLNTSLITIQALDLD------EGPNGTVTYAIVAGNIVNTFR 1684

Query: 163  ------VQTAAEQSFAELGLGSYT 180
                  V TAA++   E+  G YT
Sbjct: 1685 IDRHMGVITAAKELDYEISHGRYT 1708


>gi|31317236 GSK-3 binding protein FRAT1 [Homo sapiens]
          Length = 279

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 103 PAAPCCCRPHYLFLAASGPRSLSTSAISFAE--VQVQAPPVVAAT--PSPTAVPEVASGE 158
           PA+PC   P    L A GP + +  A       V +  PP +A T  P+P  V   A G+
Sbjct: 60  PASPC--GPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGD 117

Query: 159 TADVVQTAAEQSFAELGLG 177
              V   AA    AEL  G
Sbjct: 118 RGRVRGRAAPYCVAELATG 136


>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
          Length = 2817

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 103  PAAPCCCRPHYLFLAASGPRSLSTSAISFAEVQVQAP---PVVAATPSPTAVPEVASGET 159
            PA+P         ++AS P S S +AI+ +     AP   P++A+  +P +V  +AS   
Sbjct: 1802 PASPLAPVSASASVSASVPASTSAAAITSSSAPASAPAPTPILASVSTPASVTILASASI 1861

Query: 160  ADVVQTAAEQS 170
              +    A  S
Sbjct: 1862 PILASALASTS 1872


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,493,773
Number of Sequences: 37866
Number of extensions: 886121
Number of successful extensions: 3334
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3310
Number of HSP's gapped (non-prelim): 38
length of query: 495
length of database: 18,247,518
effective HSP length: 106
effective length of query: 389
effective length of database: 14,233,722
effective search space: 5536917858
effective search space used: 5536917858
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.