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Search of human proteins with 223005929
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223005929 hypothetical protein LOC284071 [Homo sapiens]
(825 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223005929 hypothetical protein LOC284071 [Homo sapiens] 1712 0.0
gi|42519916 forkhead box O3A [Homo sapiens] 33 1.4
gi|4503739 forkhead box O3A [Homo sapiens] 33 1.4
gi|5729734 activator of S phase kinase [Homo sapiens] 33 1.4
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 32 1.8
gi|23308585 G protein-coupled receptor 156 [Homo sapiens] 32 2.4
gi|58331242 formin homology 2 domain containing 3 [Homo sapiens] 32 3.1
gi|68163572 hypothetical protein LOC84077 [Homo sapiens] 32 3.1
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 32 3.1
gi|121114302 cullin 4B isoform 2 [Homo sapiens] 31 4.1
gi|121114298 cullin 4B isoform 1 [Homo sapiens] 31 4.1
gi|122937243 dual specificity phosphatase 27 [Homo sapiens] 31 5.4
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens] 30 7.0
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 30 7.0
gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo sap... 30 9.1
gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens] 30 9.1
gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens] 30 9.1
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens] 30 9.1
gi|13376367 WD repeat domain 76 [Homo sapiens] 30 9.1
>gi|223005929 hypothetical protein LOC284071 [Homo sapiens]
Length = 825
Score = 1712 bits (4433), Expect = 0.0
Identities = 825/825 (100%), Positives = 825/825 (100%)
Query: 1 MEVRRGDTCPRPHPSGLREEGLEPKVAFPGGANRCWNLGADAGSRLTDVFGSVMLTGSAS 60
MEVRRGDTCPRPHPSGLREEGLEPKVAFPGGANRCWNLGADAGSRLTDVFGSVMLTGSAS
Sbjct: 1 MEVRRGDTCPRPHPSGLREEGLEPKVAFPGGANRCWNLGADAGSRLTDVFGSVMLTGSAS 60
Query: 61 FYDCYTSQSEDNVDLRQTYTPFSSTEYSSSVDSSLFCAPWSTYGDDIKQPSNSQISIKNR 120
FYDCYTSQSEDNVDLRQTYTPFSSTEYSSSVDSSLFCAPWSTYGDDIKQPSNSQISIKNR
Sbjct: 61 FYDCYTSQSEDNVDLRQTYTPFSSTEYSSSVDSSLFCAPWSTYGDDIKQPSNSQISIKNR 120
Query: 121 IQTERNDYGSETDLYGLVSNILEEQDKSQPYFAEGTCSSNLKSVWPMNTSRFADHHDLLT 180
IQTERNDYGSETDLYGLVSNILEEQDKSQPYFAEGTCSSNLKSVWPMNTSRFADHHDLLT
Sbjct: 121 IQTERNDYGSETDLYGLVSNILEEQDKSQPYFAEGTCSSNLKSVWPMNTSRFADHHDLLT 180
Query: 181 ETKRPIDTVISQQAFYSDESVSAMEKQYLRNSNLTPQQKIDELHHGFTGLDLEEQWMYPS 240
ETKRPIDTVISQQAFYSDESVSAMEKQYLRNSNLTPQQKIDELHHGFTGLDLEEQWMYPS
Sbjct: 181 ETKRPIDTVISQQAFYSDESVSAMEKQYLRNSNLTPQQKIDELHHGFTGLDLEEQWMYPS 240
Query: 241 RSDHSNCHNIQTNDTAKTTFQEYPLIKNCFTPQTGLSDIMKESGVDIYHYGRDRICTKGL 300
RSDHSNCHNIQTNDTAKTTFQEYPLIKNCFTPQTGLSDIMKESGVDIYHYGRDRICTKGL
Sbjct: 241 RSDHSNCHNIQTNDTAKTTFQEYPLIKNCFTPQTGLSDIMKESGVDIYHYGRDRICTKGL 300
Query: 301 EAPLQQKRAEMFLSQFNRYNENVDYCRYPEYVHPNKAKLNKCSNFSVQDSKKLANGTPET 360
EAPLQQKRAEMFLSQFNRYNENVDYCRYPEYVHPNKAKLNKCSNFSVQDSKKLANGTPET
Sbjct: 301 EAPLQQKRAEMFLSQFNRYNENVDYCRYPEYVHPNKAKLNKCSNFSVQDSKKLANGTPET 360
Query: 361 PTVEADTYTKLFQVKPANQKKMEETIPDQQNFTFPKTTPHLTEKQFAKEAVFTADFGLTS 420
PTVEADTYTKLFQVKPANQKKMEETIPDQQNFTFPKTTPHLTEKQFAKEAVFTADFGLTS
Sbjct: 361 PTVEADTYTKLFQVKPANQKKMEETIPDQQNFTFPKTTPHLTEKQFAKEAVFTADFGLTS 420
Query: 421 EYGLKPHTACPANDFANVTEKQQFAKPDPPHSEYFKSVNLLSNSATSSGGINLNRPTWMN 480
EYGLKPHTACPANDFANVTEKQQFAKPDPPHSEYFKSVNLLSNSATSSGGINLNRPTWMN
Sbjct: 421 EYGLKPHTACPANDFANVTEKQQFAKPDPPHSEYFKSVNLLSNSATSSGGINLNRPTWMN 480
Query: 481 VQTKNNTPIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTPNSNLFQKYCQENP 540
VQTKNNTPIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTPNSNLFQKYCQENP
Sbjct: 481 VQTKNNTPIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTPNSNLFQKYCQENP 540
Query: 541 SAFSSFDFSYSGAERIQSVNHIEGLTKPGEENLFKLVTDKKIKQPNGFCDNYSAQKYGII 600
SAFSSFDFSYSGAERIQSVNHIEGLTKPGEENLFKLVTDKKIKQPNGFCDNYSAQKYGII
Sbjct: 541 SAFSSFDFSYSGAERIQSVNHIEGLTKPGEENLFKLVTDKKIKQPNGFCDNYSAQKYGII 600
Query: 601 ENVNKHNFQAKPQSGHYDPEEGPKHLDGLSQNTYQDLLESQGHSNSHRTRGGDNSRVNRT 660
ENVNKHNFQAKPQSGHYDPEEGPKHLDGLSQNTYQDLLESQGHSNSHRTRGGDNSRVNRT
Sbjct: 601 ENVNKHNFQAKPQSGHYDPEEGPKHLDGLSQNTYQDLLESQGHSNSHRTRGGDNSRVNRT 660
Query: 661 QVSCFSNNYMMGDLRHNQCFQQLGSNGFPLRSTHPFGHSVVPLLDSYDLLSYDDLSHLYP 720
QVSCFSNNYMMGDLRHNQCFQQLGSNGFPLRSTHPFGHSVVPLLDSYDLLSYDDLSHLYP
Sbjct: 661 QVSCFSNNYMMGDLRHNQCFQQLGSNGFPLRSTHPFGHSVVPLLDSYDLLSYDDLSHLYP 720
Query: 721 YFNMMYGDNSFSGLMPTFGFQRPIKTRSGPASELHIRLEECCEQWRALEKERKKTELALA 780
YFNMMYGDNSFSGLMPTFGFQRPIKTRSGPASELHIRLEECCEQWRALEKERKKTELALA
Sbjct: 721 YFNMMYGDNSFSGLMPTFGFQRPIKTRSGPASELHIRLEECCEQWRALEKERKKTELALA 780
Query: 781 KNYPGKKVSSTNNTPVPRLTSNPSRVDRLIVDELRELARVSCKNR 825
KNYPGKKVSSTNNTPVPRLTSNPSRVDRLIVDELRELARVSCKNR
Sbjct: 781 KNYPGKKVSSTNNTPVPRLTSNPSRVDRLIVDELRELARVSCKNR 825
>gi|42519916 forkhead box O3A [Homo sapiens]
Length = 673
Score = 32.7 bits (73), Expect = 1.4
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 31/205 (15%)
Query: 480 NVQTKNNTPIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTPNS------NLFQ 533
N+ + P P G LM+ +S +KGS S +ST P+S + Q
Sbjct: 393 NITLPPSQPSP---TGGLMQRSSSFPYTTKGSGLGSPTSSFNSTVFGPSSLNSLRQSPMQ 449
Query: 534 KYCQENPSAFSSFDFSYSGAERIQSVNHIEGLTKPGEENLFKLVTDKKIKQPNGFCDNYS 593
+ P+ FSS S+ G + +Q + + L+ ++ +D + Q + +
Sbjct: 450 TIQENKPATFSS--MSHYGNQTLQDLLTSDSLS---HSDVMMTQSDPLMSQASTAVSAQN 504
Query: 594 AQKYGIIENVNKHNFQAKPQSGHYDPEEGPKHLDGLSQNTYQDLLESQGHSNSHRTRGGD 653
+++ ++ N +F A+P G ++QN ++QG GG
Sbjct: 505 SRRNVMLRNDPMMSFAAQPNQGSL-----------VNQNLLHHQHQTQG------ALGGS 547
Query: 654 NSRVNRTQVSCFSNNYMMGDLRHNQ 678
+ N S + +G +H Q
Sbjct: 548 RALSNSVSNMGLSESSSLGSAKHQQ 572
>gi|4503739 forkhead box O3A [Homo sapiens]
Length = 673
Score = 32.7 bits (73), Expect = 1.4
Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 31/205 (15%)
Query: 480 NVQTKNNTPIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTPNS------NLFQ 533
N+ + P P G LM+ +S +KGS S +ST P+S + Q
Sbjct: 393 NITLPPSQPSP---TGGLMQRSSSFPYTTKGSGLGSPTSSFNSTVFGPSSLNSLRQSPMQ 449
Query: 534 KYCQENPSAFSSFDFSYSGAERIQSVNHIEGLTKPGEENLFKLVTDKKIKQPNGFCDNYS 593
+ P+ FSS S+ G + +Q + + L+ ++ +D + Q + +
Sbjct: 450 TIQENKPATFSS--MSHYGNQTLQDLLTSDSLS---HSDVMMTQSDPLMSQASTAVSAQN 504
Query: 594 AQKYGIIENVNKHNFQAKPQSGHYDPEEGPKHLDGLSQNTYQDLLESQGHSNSHRTRGGD 653
+++ ++ N +F A+P G ++QN ++QG GG
Sbjct: 505 SRRNVMLRNDPMMSFAAQPNQGSL-----------VNQNLLHHQHQTQG------ALGGS 547
Query: 654 NSRVNRTQVSCFSNNYMMGDLRHNQ 678
+ N S + +G +H Q
Sbjct: 548 RALSNSVSNMGLSESSSLGSAKHQQ 572
>gi|5729734 activator of S phase kinase [Homo sapiens]
Length = 674
Score = 32.7 bits (73), Expect = 1.4
Identities = 73/351 (20%), Positives = 125/351 (35%), Gaps = 52/351 (14%)
Query: 74 DLRQTYTPFSSTEYSSSVDSSLFCAPWSTYGDDIKQPSNSQISIKNRIQTERNDYGSETD 133
D+ Q Y PF + + P S + D Q +K RIQT+ + YG +
Sbjct: 224 DMSQLYRPFYLQLTNMPFINYSIQKPCSPFDVDKPSSMQKQTQVKLRIQTDGDKYGGTS- 282
Query: 134 LYGLVSNILEEQDKSQPYFAEGTCSSNLKSVWPMNTSRFADHHDLLTETK--RPIDTVIS 191
+ L+E+ K +G C L+ + T ++ H ++ + +D ++S
Sbjct: 283 ----IQLQLKEKKK------KGYCECCLQKYEDLETHLLSEQHRNFAQSNQYQVVDDIVS 332
Query: 192 QQAF----------------YSDESVSAMEKQYLRNSNLTPQQKIDELHHGFTGLDLEEQ 235
+ F YS S+S + L+ T Q++ EL H + D +E
Sbjct: 333 KLVFDFVEYEKDTPKKKRIKYSVGSLSPVSASVLKK---TEQKEKVELQH-ISQKDCQED 388
Query: 236 WMYPSRSDHSNCHNIQTNDTAKTTFQEYPLIKNCFTPQTGLSDIMKESGVDIYHYGRDRI 295
+ N +T +T K I + GL++ M + D I
Sbjct: 389 ---DTTVKEQNFLYKETQETEKKLLFISEPIPHPSNELRGLNEKMSNK-CSMLSTAEDDI 444
Query: 296 CTKGLEAPLQQKRAEMFL--SQFNRYNENVDYCRYPEYVHPNKAKLNKCS-NFSVQDSKK 352
+ PL + + E L S+ +++ R Y KC+ SV S
Sbjct: 445 RQNFTQLPLHKNKQECILDISEHTLSENDLEELRVDHY---------KCNIQASVHVSDF 495
Query: 353 LANGTPETPTVEADTYTKLFQVKPANQKKMEETIP-DQQNFTFPKTTPHLT 402
+ + P ++DT LF K +K + D T + HLT
Sbjct: 496 STDNSGSQPKQKSDTV--LFPAKDLKEKDLHSIFTHDSGLITINSSQEHLT 544
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 32.3 bits (72), Expect = 1.8
Identities = 40/197 (20%), Positives = 74/197 (37%), Gaps = 10/197 (5%)
Query: 63 DCYTSQSEDNVDLRQTYTPFSSTEYSSSVDSSLFCAPWSTYGDDIKQPSNSQISIKNRIQ 122
D +S S DN D + +S++ S S DSS S+ D S+S S +
Sbjct: 644 DSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSS-----DSSSSSDSSNSSDSSDSSDSSNS 698
Query: 123 TERNDYGSETDLYGLVSNILEEQDKSQPYFAEGTCSSNLKSVWPMNTSRFADHHDLLTET 182
+E +D +D S+ + D S ++ S++ S N+S +D D +
Sbjct: 699 SESSDSSDSSD-----SDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSS 753
Query: 183 KRPIDTVISQQAFYSDESVSAMEKQYLRNSNLTPQQKIDELHHGFTGLDLEEQWMYPSRS 242
+ S + SD S S+ +S+ + D S
Sbjct: 754 DSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSS 813
Query: 243 DHSNCHNIQTNDTAKTT 259
D S+ + ++D++ ++
Sbjct: 814 DSSDSDSSNSSDSSNSS 830
>gi|23308585 G protein-coupled receptor 156 [Homo sapiens]
Length = 814
Score = 32.0 bits (71), Expect = 2.4
Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 39/152 (25%)
Query: 504 LSAASKGSNHSSDFPQLSSTNLTPNSNLFQKYCQENPSAFSSFDFSYSGAERIQSVNHIE 563
L+AA S H SDF P C PS+++ +
Sbjct: 419 LAAAQGPSGHLSDFQN------DPGMAARDSQCTSGPSSYA------------------Q 454
Query: 564 GLTKPGEENLFKLVTDKKIKQPNGFCDNYSAQKYGIIENVNKHNFQAKPQSGHYDPEEGP 623
L PG+++ F ++KI F D+ + KP + + GP
Sbjct: 455 SLEGPGKDSSFSPGKEEKISDSKDFSDHLDS------------GCSQKPWT---EQSLGP 499
Query: 624 KHLDGLSQNTYQDLLESQGHSNSHRTRGGDNS 655
+ D + N Q LL +G S+ R R +NS
Sbjct: 500 ERGDQVPMNPSQSLLPDRGGSDPQRQRHLENS 531
>gi|58331242 formin homology 2 domain containing 3 [Homo sapiens]
Length = 1439
Score = 31.6 bits (70), Expect = 3.1
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 6 GDTCPRPHPSGLREEGLEPKVAFPGGANRCWNLGADAGSRLTDVFGSVMLTGSASFYDCY 65
GD P PSG R+ + GG +R G D S+ T SA C
Sbjct: 327 GDETTEPPPSGCRDRRRASVCSSGGGEHR----GLDRRRSRRHSVQSIKSTLSAPTSPC- 381
Query: 66 TSQSEDNV------DLRQTYTPFSSTEYSSSVDSSLFCAPWSTYGDDIKQPSNSQI 115
SQS + DLR+ Y+ F + Y SS SS P +T + P +++
Sbjct: 382 -SQSAPSFKPNQVRDLREKYSNFGNNSYHSSRPSSGSSVP-TTPTSSVSPPQEARL 435
>gi|68163572 hypothetical protein LOC84077 [Homo sapiens]
Length = 904
Score = 31.6 bits (70), Expect = 3.1
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 471 INLNRPTWMNVQTKNNTPIPYRNQGNLMKLNSHLSAASKGSNHSSDF---PQLSSTNLTP 527
I R TW N P + K+ SHL A KG + + P + L+P
Sbjct: 293 IEAERTTWKG----RNISYPMILRNYKAKMPSHLMLARKGDSQTPGLHYPPTAGAQTLSP 348
Query: 528 NSNL------FQKYCQENPSAFSSFDFSYS 551
S+ F ++CQE + +F F Y+
Sbjct: 349 TSHPSSANHHFSQHCQEGKAPKKAFKFHYT 378
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 31.6 bits (70), Expect = 3.1
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 407 AKEAVFTADFGLTSEYGLKPHTACPANDFANVTEKQQFAKPDPPHSEYFKSVNLLSNSAT 466
+K AV A GL YGL A A A V ++ +F P PP V+L S+S T
Sbjct: 135 SKPAVLAAPSGL-ERYGLSAAAAAAAAAAAAVEQRSRFEYPPPP-------VSLGSSSHT 186
Query: 467 SSGGINLNRPTWMNVQTKNNTPIPYRNQGNLMKLNSHLSAASKGSNH 513
+ L P T P P N+ + ++ S AS+ H
Sbjct: 187 ARLPNGLGGPNGFPKPTPEEGP-PELNRQSPNSSSAAASVASRRGTH 232
>gi|121114302 cullin 4B isoform 2 [Homo sapiens]
Length = 895
Score = 31.2 bits (69), Expect = 4.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 483 TKNNTPIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTP 527
T NT KLNS S++S SN DF SS++ TP
Sbjct: 24 TDGNTSTTPPTSAKKRKLNSSSSSSSNSSNEREDFDSTSSSSSTP 68
>gi|121114298 cullin 4B isoform 1 [Homo sapiens]
Length = 913
Score = 31.2 bits (69), Expect = 4.1
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 483 TKNNTPIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTP 527
T NT KLNS S++S SN DF SS++ TP
Sbjct: 42 TDGNTSTTPPTSAKKRKLNSSSSSSSNSSNEREDFDSTSSSSSTP 86
>gi|122937243 dual specificity phosphatase 27 [Homo sapiens]
Length = 1158
Score = 30.8 bits (68), Expect = 5.4
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 228 TGLDLEEQWMYPSRSDHSNCHNIQTNDTAKTTFQEYPLIKNCFTPQTGLSDIMKESGVDI 287
T D EE+ + PS D +N +Q + + +Y ++ + T + I S +
Sbjct: 3 TRKDTEEEQVVPSEEDEANVRAVQAHYLRSPSPSQYSMVSDAETESIFMEPIHLSSAIAA 62
Query: 288 YHYGRDRICTKGL----EAPLQQKRAEMFLSQ--FNRYNENVD 324
+ + G+ E P + AE L + +NR E +D
Sbjct: 63 KQIINEELKPPGVRADAECPGMLESAEQLLVEDLYNRVREKMD 105
>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
Length = 824
Score = 30.4 bits (67), Expect = 7.0
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 192 QQAFYSDESVSAMEKQYLRN--SNLTPQQKIDELHHGFTGLDLEEQWMYPSRSDHSNCHN 249
Q+ D A+ L++ S+L P+Q + L G +GL+ SRS H + H
Sbjct: 362 QELALEDPPSEALHSSALKDKGSSLEPRQHFNTLDVGASGLNTSHSPSASSRSSHKSSHT 421
Query: 250 IQTNDTAKTT 259
+ T+ T
Sbjct: 422 AMSEPTSTPT 431
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 30.4 bits (67), Expect = 7.0
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 52 SVMLTGSASFYDCYTSQSEDNVDLRQTYTPFSSTEYSSSVDSSLFCAPWSTYGDDIKQPS 111
S++ SAS Y C++ E+ D+ T S ++SSS P + +D+ P
Sbjct: 1025 SLLTAVSASGYSCFSEADEE--DIGSTAATPVSEQFSSSQKQKAETFPLMSPLEDLSLPP 1082
Query: 112 NSQISIKNRIQTERNDYGSETDLYGLVSNILEEQDKSQPY 151
++ S K I+ E + Y IL ++ K+Q Y
Sbjct: 1083 STDKSEKAEIKPEIPTTSTSVSEY----LILAQKQKTQAY 1118
>gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo
sapiens]
Length = 558
Score = 30.0 bits (66), Expect = 9.1
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 576 LVTDKKIKQPNGFCDNYSAQKYGIIENVNKHNFQAKPQSGHYDPEEGPKHLDGLSQNTYQ 635
L TD K+++ N D+ K + + + + + PE KH SQN +
Sbjct: 234 LQTDVKVEE-NPDADSDFDAKSSADDEIEETRVNCRREKVIETPENDFKH--HRSQNHSR 290
Query: 636 DLLESQGHSNSHRTRGGDNSR 656
E +GHS H T+G SR
Sbjct: 291 SPSEERGHSTRHHTKGSRTSR 311
>gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 30.0 bits (66), Expect = 9.1
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 28/197 (14%)
Query: 65 YTSQSEDNVDLRQTYTPFSSTE-----YSSSVDSSLFCAPWSTYGDDIK-QPSNSQISIK 118
+ + ED+ ++ Y P ++ +S VDS P + +++ Q + ++
Sbjct: 76 FEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLE 135
Query: 119 NRIQTERNDYGSETDLYGLVSNILEEQDKSQPYF---AEGTCSSNLKSVWPMNTSRFADH 175
+ + +N G D+ EE+D + YF AE + ++ N +D
Sbjct: 136 EKDKERKNVKGIRDDI--------EEEDDQEAYFRYMAENPTAGVVQEEEEDNLEYDSDG 187
Query: 176 HDLLTETKRPIDTVISQQAFYSDESVSAMEKQYLRN----SNLTPQQKIDELHHGFTGLD 231
+ + TK+ ID + +S+ EK + +NLTPQQ ID H L+
Sbjct: 188 NPI-APTKKIIDPL--PPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHK----LN 240
Query: 232 LEEQWMYPSRSDHSNCH 248
L P R S H
Sbjct: 241 LRVSGAAPPRPGSSFAH 257
>gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 30.0 bits (66), Expect = 9.1
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 28/197 (14%)
Query: 65 YTSQSEDNVDLRQTYTPFSSTE-----YSSSVDSSLFCAPWSTYGDDIK-QPSNSQISIK 118
+ + ED+ ++ Y P ++ +S VDS P + +++ Q + ++
Sbjct: 76 FEDEEEDSSNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFMAEVEDQAARDMKRLE 135
Query: 119 NRIQTERNDYGSETDLYGLVSNILEEQDKSQPYF---AEGTCSSNLKSVWPMNTSRFADH 175
+ + +N G D+ EE+D + YF AE + ++ N +D
Sbjct: 136 EKDKERKNVKGIRDDI--------EEEDDQEAYFRYMAENPTAGVVQEEEEDNLEYDSDG 187
Query: 176 HDLLTETKRPIDTVISQQAFYSDESVSAMEKQYLRN----SNLTPQQKIDELHHGFTGLD 231
+ + TK+ ID + +S+ EK + +NLTPQQ ID H L+
Sbjct: 188 NPI-APTKKIIDPL--PPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHK----LN 240
Query: 232 LEEQWMYPSRSDHSNCH 248
L P R S H
Sbjct: 241 LRVSGAAPPRPGSSFAH 257
>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
Length = 2229
Score = 30.0 bits (66), Expect = 9.1
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 18/100 (18%)
Query: 484 KNNTPIPYRNQGNLMKLNSHLSAASKGSNHS-----------SDFPQLSSTNLTPNSNLF 532
+N TP+ + + L LS S GS HS +D P+ SS + L
Sbjct: 1460 QNGTPLKVKRSPD-EALPGGLSGCSSGSGHSPYALERAAHASADLPEASSKKAEKEAKLA 1518
Query: 533 QKYCQENPSAFSSFDFSYSGAERIQSVNHIEGLTKPGEEN 572
E A FD +Y G+ I++ + PGEE+
Sbjct: 1519 APRAGEQGEAMKQFDLNY-GSAIIENCG-----SSPGEES 1552
>gi|13376367 WD repeat domain 76 [Homo sapiens]
Length = 626
Score = 30.0 bits (66), Expect = 9.1
Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 27/186 (14%)
Query: 379 QKKMEETIPDQQNFTFPKTTPHLTEKQFAKEAVFTADFGLTSEYGLK----PHTACPAND 434
Q K+ E + QN + P T V+ A F L S Y L P + N
Sbjct: 18 QMKVNE-YKENQNIAYVSLRPAQTTVLIKTAKVYLAPFSL-SNYQLDQLMCPKSLSEKNS 75
Query: 435 FANVTEKQQFAK-------PDPPHSEYFKSVNLLSNSATSSGGINLNRPTWMNVQTKNNT 487
V K+ K P + K+ + L NS+++ V T++N
Sbjct: 76 NNEVACKKTKIKKTCRRIIPPKMKNTSSKAESTLQNSSSA-------------VHTESNK 122
Query: 488 PIPYRNQGNLMKLNSHLSAASKGSNHSSDFPQLSSTNLTPNSNLFQKYCQENPSAFSSFD 547
P R + M L+ + ++ G + P L + L+P K EN F+S
Sbjct: 123 LQPKRT-ADAMNLSVDVESSQDGDSDEDTTPALDFSGLSPYERKRLKNISENADFFASLQ 181
Query: 548 FSYSGA 553
S S A
Sbjct: 182 LSESAA 187
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,760,533
Number of Sequences: 37866
Number of extensions: 1574762
Number of successful extensions: 3125
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3108
Number of HSP's gapped (non-prelim): 34
length of query: 825
length of database: 18,247,518
effective HSP length: 111
effective length of query: 714
effective length of database: 14,044,392
effective search space: 10027695888
effective search space used: 10027695888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.