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Search of human proteins with 219802797
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219802797 transmembrane protein 106C isoform b [Homo
sapiens]
(231 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219802857 transmembrane protein 106C isoform b [Homo sapiens] 459 e-130
gi|219802797 transmembrane protein 106C isoform b [Homo sapiens] 459 e-130
gi|219802834 transmembrane protein 106C isoform a [Homo sapiens] 448 e-126
gi|13129026 transmembrane protein 106C isoform a [Homo sapiens] 448 e-126
gi|197116389 transmembrane protein 106B [Homo sapiens] 200 7e-52
gi|40254893 transmembrane protein 106B [Homo sapiens] 200 7e-52
gi|21450796 transmembrane protein 106A [Homo sapiens] 132 2e-31
gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens neandert... 33 0.16
gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens] 32 0.60
gi|224831262 calcium channel, voltage-dependent, beta 4 subunit ... 30 1.3
gi|54607068 calcium channel, voltage-dependent, beta 4 subunit i... 30 1.3
gi|54607066 calcium channel, voltage-dependent, beta 4 subunit i... 30 1.3
gi|54607064 calcium channel, voltage-dependent, beta 4 subunit i... 30 1.3
gi|4506591 retinal pigment epithelium-specific protein 65kDa [Ho... 30 1.7
gi|160948599 integrator complex subunit 1 [Homo sapiens] 30 2.3
gi|145587088 hypothetical protein LOC165186 [Homo sapiens] 29 3.9
gi|16306487 cadherin 7, type 2 preproprotein [Homo sapiens] 28 6.6
gi|16306489 cadherin 7, type 2 preproprotein [Homo sapiens] 28 6.6
>gi|219802857 transmembrane protein 106C isoform b [Homo sapiens]
Length = 231
Score = 459 bits (1182), Expect = e-130
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSY 180
VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSY
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSY 180
Query: 181 VYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNSTAI 231
VYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNSTAI
Sbjct: 181 VYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNSTAI 231
>gi|219802797 transmembrane protein 106C isoform b [Homo sapiens]
Length = 231
Score = 459 bits (1182), Expect = e-130
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSY 180
VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSY
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSY 180
Query: 181 VYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNSTAI 231
VYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNSTAI
Sbjct: 181 VYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNSTAI 231
>gi|219802834 transmembrane protein 106C isoform a [Homo sapiens]
Length = 250
Score = 448 bits (1152), Expect = e-126
Identities = 231/250 (92%), Positives = 231/250 (92%), Gaps = 19/250 (7%)
Query: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTV--------------- 165
VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTV
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPR 180
Query: 166 ----VNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 221
VNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY
Sbjct: 181 SEQLVNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 240
Query: 222 VDCGGNSTAI 231
VDCGGNSTAI
Sbjct: 241 VDCGGNSTAI 250
>gi|13129026 transmembrane protein 106C isoform a [Homo sapiens]
Length = 250
Score = 448 bits (1152), Expect = e-126
Identities = 231/250 (92%), Positives = 231/250 (92%), Gaps = 19/250 (7%)
Query: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI
Sbjct: 1 MGSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAIAQFPYVEFTGRDSITCLTCQGTGYI 60
Query: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV
Sbjct: 61 PTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKV 120
Query: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTV--------------- 165
VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTV
Sbjct: 121 VKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVSTYVTTNVSLIPPR 180
Query: 166 ----VNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 221
VNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY
Sbjct: 181 SEQLVNFTGKAEMGGPFSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHY 240
Query: 222 VDCGGNSTAI 231
VDCGGNSTAI
Sbjct: 241 VDCGGNSTAI 250
>gi|197116389 transmembrane protein 106B [Homo sapiens]
Length = 274
Score = 200 bits (509), Expect = 7e-52
Identities = 111/238 (46%), Positives = 148/238 (62%), Gaps = 30/238 (12%)
Query: 19 EDDRDGLLAEREQEEA-----IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIP 73
E+ R+GL+ E ++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP
Sbjct: 24 ENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIP 83
Query: 74 HSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKVVKVTFNKQDSLVI 133
+SDQRLRP+RTK YV+ S+ +CLL SGL VFFLFP S+ V G+K V+++ Q +
Sbjct: 84 YSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIY 143
Query: 134 LTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMG-----GP----------- 177
L I TL I N+N+Y+V V ++++Q+Q+ TV+ GKA + GP
Sbjct: 144 LNITNTLNITNNNYYSVEVENITAQVQFSKTVI---GKARLNNITIIGPLDMKQIDYTVP 200
Query: 178 ------FSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNST 229
SY+Y FCT+ I VHNIV+ M+ +V +Y G Q S E + YVDCG N+T
Sbjct: 201 TVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 258
>gi|40254893 transmembrane protein 106B [Homo sapiens]
Length = 274
Score = 200 bits (509), Expect = 7e-52
Identities = 111/238 (46%), Positives = 148/238 (62%), Gaps = 30/238 (12%)
Query: 19 EDDRDGLLAEREQEEA-----IAQFPYVEFTGRDSITCLTCQGTGYIPTEQVNELVALIP 73
E+ R+GL+ E ++QFPYVEFTGRDS+TC TCQGTG IP Q N+LVALIP
Sbjct: 24 ENMRNGLVNSEVHNEDGRNGDVSQFPYVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIP 83
Query: 74 HSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVLVDDDGIKVVKVTFNKQDSLVI 133
+SDQRLRP+RTK YV+ S+ +CLL SGL VFFLFP S+ V G+K V+++ Q +
Sbjct: 84 YSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSYDVQKRTIY 143
Query: 134 LTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMG-----GP----------- 177
L I TL I N+N+Y+V V ++++Q+Q+ TV+ GKA + GP
Sbjct: 144 LNITNTLNITNNNYYSVEVENITAQVQFSKTVI---GKARLNNITIIGPLDMKQIDYTVP 200
Query: 178 ------FSYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDCGGNST 229
SY+Y FCT+ I VHNIV+ M+ +V +Y G Q S E + YVDCG N+T
Sbjct: 201 TVIAEEMSYMYDFCTLISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 258
>gi|21450796 transmembrane protein 106A [Homo sapiens]
Length = 262
Score = 132 bits (332), Expect = 2e-31
Identities = 72/198 (36%), Positives = 113/198 (57%), Gaps = 19/198 (9%)
Query: 49 ITCLTCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFP 108
+TC TCQG+G IP E +LVALIP+ DQRL+P+ TK +V L++L+CL+ S +VFFLFP
Sbjct: 57 VTCPTCQGSGKIPQELEKQLVALIPYGDQRLKPKHTKLFVFLAVLICLVTSSFIVFFLFP 116
Query: 109 HSVLVDDDGIKVVKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNF 168
SV+V G+ V F++ D + L I L I N N+Y + VT L+ ++ +++ VV
Sbjct: 117 RSVIVQPAGLNSSTVAFDEAD--IYLNITNILNISNGNYYPIMVTQLTLEVLHLSLVVGQ 174
Query: 169 TGKAEM--GGPFS---------------YVYFFCTVPEILVHNIVIFMRTSVKISYIGLM 211
+ GP + Y CT EI VH++++ ++ ++ SY+
Sbjct: 175 VSNNLLLHIGPLASEQMFYAVATKIRDENTYKICTWLEIKVHHVLLHIQGTLTCSYLSHS 234
Query: 212 TQSSLETHHYVDCGGNST 229
Q +++ YVDC GN++
Sbjct: 235 EQLVFQSYEYVDCRGNAS 252
>gi|196123580 NADH dehydrogenase subunit 2 [Homo sapiens
neanderthalensis]
Length = 347
Score = 33.5 bits (75), Expect = 0.16
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 125 FNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSYVYFF 184
F K +SL+I TIMAT+ + N FY + S S + M+ V + E P ++
Sbjct: 270 FTKNNSLIIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFLPTL 329
Query: 185 CTVPEILV 192
T+ +L+
Sbjct: 330 ITLTTLLL 337
>gi|251831108 NADH dehydrogenase subunit 2 [Homo sapiens]
Length = 347
Score = 31.6 bits (70), Expect = 0.60
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 125 FNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGKAEMGGPFSYV 181
F K +SL+I TIMAT+ + N FY + S S + M+ V + E P ++
Sbjct: 270 FTKNNSLIIPTIMATITLLNLYFYLRLIYSTSITLLPMSNNVKMKWQFEHTKPTPFL 326
>gi|224831262 calcium channel, voltage-dependent, beta 4 subunit
isoform d [Homo sapiens]
Length = 458
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 GSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAI 35
GS S +RPS E+DR+ + EREQ+ AI
Sbjct: 50 GSADSYTSRPSDSDVSLEEDREAIRQEREQQAAI 83
>gi|54607068 calcium channel, voltage-dependent, beta 4 subunit
isoform a [Homo sapiens]
Length = 486
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 GSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAI 35
GS S +RPS E+DR+ + EREQ+ AI
Sbjct: 16 GSADSYTSRPSDSDVSLEEDREAIRQEREQQAAI 49
>gi|54607066 calcium channel, voltage-dependent, beta 4 subunit
isoform c [Homo sapiens]
Length = 502
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 GSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAI 35
GS S +RPS E+DR+ + EREQ+ AI
Sbjct: 32 GSADSYTSRPSDSDVSLEEDREAIRQEREQQAAI 65
>gi|54607064 calcium channel, voltage-dependent, beta 4 subunit
isoform b [Homo sapiens]
Length = 520
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 2 GSQHSAAARPSSCRRKQEDDRDGLLAEREQEEAI 35
GS S +RPS E+DR+ + EREQ+ AI
Sbjct: 50 GSADSYTSRPSDSDVSLEEDREAIRQEREQQAAI 83
>gi|4506591 retinal pigment epithelium-specific protein 65kDa [Homo
sapiens]
Length = 533
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 179 SYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDC 224
SYV+ F P N ++F+ T VKI+ ++ SL +Y+DC
Sbjct: 238 SYVHSFGLTP-----NYIVFVETPVKINLFKFLSSWSLWGANYMDC 278
>gi|160948599 integrator complex subunit 1 [Homo sapiens]
Length = 2190
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 118 IKVVKVTFNKQDSLVILTIMATLKIRNSNFYTVAVTSLSSQIQYMNTVVNFTGK 171
+K +KVT K DS + L++M KI+ + F T V + + +NF K
Sbjct: 146 VKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASINFKAK 199
>gi|145587088 hypothetical protein LOC165186 [Homo sapiens]
Length = 1019
Score = 28.9 bits (63), Expect = 3.9
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 53 TCQGTGYIPTEQVNELVALIPHSDQRLRPQRTKQYVLLSILLCLLASGLVVFFLFPHSVL 112
T QG G + EQ+ EL L+ D R R + Q + L L + +V +
Sbjct: 756 TLQGRGEM-VEQLRELTRLLEAKDFRSRMEGVGQLLELCKAKTELVTAHLVQVFDAFTPR 814
Query: 113 VDDDGIKV--------VKVTFNKQDSL------VILTIMATLKIRNSNFYTVAVTSLSSQ 158
+ D KV K+ ++SL +I+T+ L +NS Y AV L +
Sbjct: 815 LQDSNKKVNQWALESFAKMIPLLRESLHPMLLSIIITVADNLNSKNSGIYAAAVAVLDAM 874
Query: 159 IQYMNTV 165
++ ++ +
Sbjct: 875 VESLDNL 881
>gi|16306487 cadherin 7, type 2 preproprotein [Homo sapiens]
Length = 785
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 112 LVDDDGIKVVKVTFNKQDSLVILTIMATLKIRNSNFYTVAV 152
+VD DG+ + K++ +K+ I+TI L YT+ +
Sbjct: 301 IVDGDGLGIFKISVDKETQEGIITIQKELDFEAKTSYTLRI 341
>gi|16306489 cadherin 7, type 2 preproprotein [Homo sapiens]
Length = 785
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 112 LVDDDGIKVVKVTFNKQDSLVILTIMATLKIRNSNFYTVAV 152
+VD DG+ + K++ +K+ I+TI L YT+ +
Sbjct: 301 IVDGDGLGIFKISVDKETQEGIITIQKELDFEAKTSYTLRI 341
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,069,124
Number of Sequences: 37866
Number of extensions: 312395
Number of successful extensions: 809
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 18
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.