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Search of human proteins with 212549555
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|212549555 interleukin enhancer binding factor 3 isoform e
[Homo sapiens]
(706 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|212549555 interleukin enhancer binding factor 3 isoform e [Ho... 1419 0.0
gi|24234753 interleukin enhancer binding factor 3 isoform b [Hom... 1405 0.0
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 1388 0.0
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 1374 0.0
gi|24234756 interleukin enhancer binding factor 3 isoform c [Hom... 1371 0.0
gi|21361745 spermatid perinuclear RNA binding protein [Homo sapi... 726 0.0
gi|34101286 zinc finger RNA binding protein [Homo sapiens] 366 e-101
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 342 5e-94
gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo... 169 8e-42
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s... 169 8e-42
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s... 169 8e-42
gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo s... 169 8e-42
gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens] 128 2e-29
gi|24234747 interleukin enhancer binding factor 2 [Homo sapiens] 101 2e-21
gi|7657625 staufen homolog 2 [Homo sapiens] 66 1e-10
gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo sa... 62 1e-09
gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo sa... 62 2e-09
gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo sa... 62 2e-09
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa... 62 2e-09
gi|82659089 staufen isoform a [Homo sapiens] 60 7e-09
gi|82659087 staufen isoform b [Homo sapiens] 60 7e-09
gi|82659085 staufen isoform a [Homo sapiens] 60 7e-09
gi|82659083 staufen isoform a [Homo sapiens] 60 7e-09
gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens] 58 3e-08
gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens] 58 3e-08
gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens] 58 3e-08
gi|82659091 staufen isoform c [Homo sapiens] 57 6e-08
gi|208431829 eukaryotic translation initiation factor 2-alpha ki... 47 6e-05
gi|208431827 eukaryotic translation initiation factor 2-alpha ki... 47 6e-05
gi|4506103 eukaryotic translation initiation factor 2-alpha kina... 47 6e-05
>gi|212549555 interleukin enhancer binding factor 3 isoform e [Homo
sapiens]
Length = 706
Score = 1419 bits (3673), Expect = 0.0
Identities = 706/706 (100%), Positives = 706/706 (100%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR 540
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR 540
Query: 541 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 600
RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL
Sbjct: 541 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 600
Query: 601 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 660
DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG
Sbjct: 601 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 660
Query: 661 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDFFTDCYGYHDFGSS 706
FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDFFTDCYGYHDFGSS
Sbjct: 661 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDFFTDCYGYHDFGSS 706
>gi|24234753 interleukin enhancer binding factor 3 isoform b [Homo
sapiens]
Length = 702
Score = 1405 bits (3638), Expect = 0.0
Identities = 702/706 (99%), Positives = 702/706 (99%), Gaps = 4/706 (0%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR 540
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE QGPILTKHGKNPVMELNEKR
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE----QGPILTKHGKNPVMELNEKR 536
Query: 541 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 600
RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL
Sbjct: 537 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 596
Query: 601 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 660
DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG
Sbjct: 597 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 656
Query: 661 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDFFTDCYGYHDFGSS 706
FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDFFTDCYGYHDFGSS
Sbjct: 657 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDFFTDCYGYHDFGSS 702
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 1388 bits (3592), Expect = 0.0
Identities = 692/696 (99%), Positives = 695/696 (99%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR 540
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR 540
Query: 541 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 600
RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL
Sbjct: 541 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 600
Query: 601 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 660
DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG
Sbjct: 601 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 660
Query: 661 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDFFTD 696
FGGANHGGYMNAGAGYGSYGYGGNSATAGYS F+++
Sbjct: 661 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSQFYSN 696
Score = 30.4 bits (67), Expect = 5.9
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 613 RGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNA 672
+G ++ ++PG G G + E + G GG+ G G G + +HGGY
Sbjct: 785 QGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSG-GASYNPGSHGGYGGG 843
Query: 673 GAGYGSY-GYGGNSATAGYS 691
G SY G G + + Y+
Sbjct: 844 SGGGSSYQGKQGGYSQSNYN 863
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 1374 bits (3557), Expect = 0.0
Identities = 688/696 (98%), Positives = 691/696 (99%), Gaps = 4/696 (0%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR 540
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE QGPILTKHGKNPVMELNEKR
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE----QGPILTKHGKNPVMELNEKR 536
Query: 541 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 600
RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL
Sbjct: 537 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 596
Query: 601 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 660
DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG
Sbjct: 597 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 656
Query: 661 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDFFTD 696
FGGANHGGYMNAGAGYGSYGYGGNSATAGYS F+++
Sbjct: 657 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSQFYSN 692
Score = 30.4 bits (67), Expect = 5.9
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 613 RGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNA 672
+G ++ ++PG G G + E + G GG+ G G G + +HGGY
Sbjct: 781 QGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSG-GASYNPGSHGGYGGG 839
Query: 673 GAGYGSY-GYGGNSATAGYS 691
G SY G G + + Y+
Sbjct: 840 SGGGSSYQGKQGGYSQSNYN 859
>gi|24234756 interleukin enhancer binding factor 3 isoform c [Homo
sapiens]
Length = 690
Score = 1371 bits (3548), Expect = 0.0
Identities = 687/693 (99%), Positives = 688/693 (99%), Gaps = 4/693 (0%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA
Sbjct: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
Query: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP
Sbjct: 61 ESDNMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKP 120
Query: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM
Sbjct: 121 TTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEM 180
Query: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV
Sbjct: 181 EKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRV 240
Query: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT
Sbjct: 241 PTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEAT 300
Query: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP
Sbjct: 301 DAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIP 360
Query: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL
Sbjct: 361 PSTTYAITPMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKL 420
Query: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE
Sbjct: 421 VSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGE 480
Query: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKR 540
DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE QGPILTKHGKNPVMELNEKR
Sbjct: 481 DSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE----QGPILTKHGKNPVMELNEKR 536
Query: 541 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 600
RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL
Sbjct: 537 RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLAL 596
Query: 601 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 660
DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG
Sbjct: 597 DANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRG 656
Query: 661 FGGANHGGYMNAGAGYGSYGYGGNSATAGYSDF 693
FGGANHGGYMNAGAGYGSYGYGGNSATAGY+ F
Sbjct: 657 FGGANHGGYMNAGAGYGSYGYGGNSATAGYTGF 689
>gi|21361745 spermatid perinuclear RNA binding protein [Homo
sapiens]
Length = 672
Score = 726 bits (1873), Expect = 0.0
Identities = 401/690 (58%), Positives = 491/690 (71%), Gaps = 59/690 (8%)
Query: 1 MRPMRIFVNDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQA 60
MR +R F NDDRHVM KHS++YP+ EELEAVQNMVS E ALK VSDW+DE KG+ +
Sbjct: 1 MRSIRSFANDDRHVMVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKTEG 60
Query: 61 ESD-NMDVPPEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEK 119
E++ D E+ SK+ G RTL GVMR+GLVAKGLL+K D+DLELVL+CK+K
Sbjct: 61 ETEVKKDEAGENYSKDQGG--------RTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDK 112
Query: 120 PTTALLDKVADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREE 179
PT LL+ V DNL IQ+ +TE+KY++ Q V++A+I+I+NTKEP L+L + LTSP++R+E
Sbjct: 113 PTETLLNTVKDNLPIQIQKLTEEKYQVEQCVNEASIIIRNTKEPTLTLKVILTSPLIRDE 172
Query: 180 MEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTR 239
+EK GE +S+ DPPD+LDRQKCL ALASLRHAKWFQARANGLKSCVIV+R+LRDLC R
Sbjct: 173 LEKK-DGENVSMKDPPDLLDRQKCLNALASLRHAKWFQARANGLKSCVIVLRILRDLCNR 231
Query: 240 VPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEA 299
VPTW PL+GWPLEL+CEKSIGT NRP+GAGEALRRV+ECLASGI++P G G++DPCE++
Sbjct: 232 VPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVMECLASGILLPGGPGLHDPCERDP 291
Query: 300 TDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQI 359
TDA+ ++ QQ+EDIT SAQHALRL+AFGQ++KVL MDPLPS P + Y+ +
Sbjct: 292 TDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMDPLPSSKPFQ-------KYSWSV 344
Query: 360 PPSTTYAITPMKRPMEED-GEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQY 418
+ +KRP E+ G++K P+KK K+ +K ++ MNALMRLNQ++PGLQY
Sbjct: 345 TDKEGAGSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSKAIDLMNALMRLNQIRPGLQY 404
Query: 419 KLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSK 478
KL+SQ+GPVHAP+FTMSV+VDG ++EASGPSKKTAKLHVAVKVLQ MG PTG +
Sbjct: 405 KLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVLQAMGYPTGFDADIECM 464
Query: 479 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAE-----NVKQQGPILTKHGKNPV 533
D + E+K E VS+ S+ ++T E V+ QGPILT GKNPV
Sbjct: 465 SSDEKSDNESKN---------ETVSSNSSNNTGNSTTETSSTLEVRTQGPILTASGKNPV 515
Query: 534 MELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLF 593
MELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKF+GAG NKKVAKA AALAALEKLF
Sbjct: 516 MELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKLF 575
Query: 594 PDTPLALDANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPPPNLRGRGRGGSIR 653
P A AN KK+ +P G A +RGRGRG R
Sbjct: 576 -SGPNA--ANNKKKKIIPQAKGVVNTAVS---------------AAVQAVRGRGRGTLTR 617
Query: 654 GRGRGRGFGGANHG-GYMNAGAGYGS-YGY 681
G F GA GY+ GYG+ YGY
Sbjct: 618 G-----AFVGATAAPGYI--APGYGTPYGY 640
>gi|34101286 zinc finger RNA binding protein [Homo sapiens]
Length = 1074
Score = 366 bits (940), Expect = e-101
Identities = 186/334 (55%), Positives = 243/334 (72%), Gaps = 21/334 (6%)
Query: 9 NDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQAESDNMDVP 68
+DDR+VM KH+++YPT+EEL+AVQ +VS TERALK VSD + E EK +++
Sbjct: 722 SDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKNKNKEG-------- 773
Query: 69 PEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKV 128
DD KEG + R L+GV+RVG++AKGLLL+GD ++ LVLLC EKP+ LL ++
Sbjct: 774 --DDKKEGGKD-------RALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRI 824
Query: 129 ADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGET 188
A+NL QLA ++ +KY+I +V +AAI++ + EP + +TI LTSP++REE + G+
Sbjct: 825 AENLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREE--NMREGDV 882
Query: 189 LS--VNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPL 246
S V DPPDVLDRQKCL ALA+LRHAKWFQARANGL+SCVI+IR+LRDLC RVPTW
Sbjct: 883 TSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDF 942
Query: 247 RGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHL 306
W +ELL EK+I +A+ P G+ALRRV EC++SGI++ G+ DPCEK+ D + +
Sbjct: 943 PSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATM 1002
Query: 307 DRQQREDITQSAQHALRLAAFGQLHKVLGMDPLP 340
QQREDIT SAQ ALRL AF Q+HKVLGMDPLP
Sbjct: 1003 TDQQREDITSSAQFALRLLAFRQIHKVLGMDPLP 1036
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 342 bits (878), Expect = 5e-94
Identities = 177/334 (52%), Positives = 235/334 (70%), Gaps = 17/334 (5%)
Query: 9 NDDRHVMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGSSEQAESDNMDVP 68
+DDRHVM KH+++YPT++EL AVQ VSH ERALK VSD + E+++G E+ V
Sbjct: 588 SDDRHVMCKHATIYPTEQELLAVQRAVSHAERALKLVSDTLAEEDRGRREEEGDKRSSVA 647
Query: 69 PEDDSKEGAGEQKTEHMTRTLRGVMRVGLVAKGLLLKGDLDLELVLLCKEKPTTALLDKV 128
P+ TR L+GVMRVG++AKGLLL+GD ++ L LLC EKPT +LL ++
Sbjct: 648 PQ---------------TRVLKGVMRVGILAKGLLLRGDRNVRLALLCSEKPTHSLLRRI 692
Query: 129 ADNLAIQLAAVTEDKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGET 188
A L QL VTED+YE+ S +A IVI + +EP + +TI +TSP++RE+ E
Sbjct: 693 AQQLPRQLQMVTEDEYEV-SSDPEANIVISSCEEPRMQVTISVTSPLMREDPSTDPGVEE 751
Query: 189 LSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRG 248
D DVL +KCL +LA+LRHA+WFQARA+GL+ CVIVIRVLRDLC RVPTWG L
Sbjct: 752 PQA-DAGDVLSPKKCLESLAALRHARWFQARASGLQPCVIVIRVLRDLCRRVPTWGALPA 810
Query: 249 WPLELLCEKSIGTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDR 308
W +ELL EK++ +A P+G G+A+RRVLEC+A+G ++ DG G+ DPCE++ TDA+ +
Sbjct: 811 WAMELLVEKAVSSAAGPLGPGDAVRRVLECVATGTLLTDGPGLQDPCERDQTDALEPMTL 870
Query: 309 QQREDITQSAQHALRLAAFGQLHKVLGMDPLPSK 342
Q+RED+T SAQHALR+ AF Q HKVLGMD LP +
Sbjct: 871 QEREDVTASAQHALRMLAFRQTHKVLGMDLLPPR 904
>gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo
sapiens]
Length = 674
Score = 169 bits (428), Expect = 8e-42
Identities = 113/271 (41%), Positives = 142/271 (52%), Gaps = 35/271 (12%)
Query: 371 KRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAP 430
KRP+EE S K +++K+ + P NALM+LN++KPGLQY L+SQTGPVHAP
Sbjct: 52 KRPLEEGSNGHS----KYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAP 107
Query: 431 IFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQD-MGLPTGAEGRDSSKGEDSAEETEAK 489
+F MSVEV+G FE SGP+KK AKLH A K L+ + P +E + S
Sbjct: 108 LFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Query: 490 PAVVAPAPVVEAVSTPSAAFP----------------------SDATAENVKQQGPIL-- 525
P + TP A P S A + P+L
Sbjct: 168 DQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPP 227
Query: 526 --TKHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAY 583
GKNPVM LNE R GLKY+ +SE+G SH K FVM V VDGQ F+G+G NKK+AKA
Sbjct: 228 FPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKAR 287
Query: 584 AALAALEKLFPDTPLALDANKKKRAPVPVRG 614
AA +AL +F L LD R P+P G
Sbjct: 288 AAQSALAAIF---NLHLD-QTPSRQPIPSEG 314
>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
sapiens]
Length = 714
Score = 169 bits (428), Expect = 8e-42
Identities = 113/271 (41%), Positives = 142/271 (52%), Gaps = 35/271 (12%)
Query: 371 KRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAP 430
KRP+EE S K +++K+ + P NALM+LN++KPGLQY L+SQTGPVHAP
Sbjct: 52 KRPLEEGSNGHS----KYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAP 107
Query: 431 IFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQD-MGLPTGAEGRDSSKGEDSAEETEAK 489
+F MSVEV+G FE SGP+KK AKLH A K L+ + P +E + S
Sbjct: 108 LFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Query: 490 PAVVAPAPVVEAVSTPSAAFP----------------------SDATAENVKQQGPIL-- 525
P + TP A P S A + P+L
Sbjct: 168 DQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPP 227
Query: 526 --TKHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAY 583
GKNPVM LNE R GLKY+ +SE+G SH K FVM V VDGQ F+G+G NKK+AKA
Sbjct: 228 FPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKAR 287
Query: 584 AALAALEKLFPDTPLALDANKKKRAPVPVRG 614
AA +AL +F L LD R P+P G
Sbjct: 288 AAQSALAAIF---NLHLD-QTPSRQPIPSEG 314
>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
sapiens]
Length = 741
Score = 169 bits (428), Expect = 8e-42
Identities = 113/271 (41%), Positives = 142/271 (52%), Gaps = 35/271 (12%)
Query: 371 KRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAP 430
KRP+EE S K +++K+ + P NALM+LN++KPGLQY L+SQTGPVHAP
Sbjct: 52 KRPLEEGSNGHS----KYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAP 107
Query: 431 IFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQD-MGLPTGAEGRDSSKGEDSAEETEAK 489
+F MSVEV+G FE SGP+KK AKLH A K L+ + P +E + S
Sbjct: 108 LFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Query: 490 PAVVAPAPVVEAVSTPSAAFP----------------------SDATAENVKQQGPIL-- 525
P + TP A P S A + P+L
Sbjct: 168 DQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPP 227
Query: 526 --TKHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAY 583
GKNPVM LNE R GLKY+ +SE+G SH K FVM V VDGQ F+G+G NKK+AKA
Sbjct: 228 FPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKAR 287
Query: 584 AALAALEKLFPDTPLALDANKKKRAPVPVRG 614
AA +AL +F L LD R P+P G
Sbjct: 288 AAQSALAAIF---NLHLD-QTPSRQPIPSEG 314
>gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo
sapiens]
Length = 701
Score = 169 bits (428), Expect = 8e-42
Identities = 113/271 (41%), Positives = 142/271 (52%), Gaps = 35/271 (12%)
Query: 371 KRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAP 430
KRP+EE S K +++K+ + P NALM+LN++KPGLQY L+SQTGPVHAP
Sbjct: 52 KRPLEEGSNGHS----KYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAP 107
Query: 431 IFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQD-MGLPTGAEGRDSSKGEDSAEETEAK 489
+F MSVEV+G FE SGP+KK AKLH A K L+ + P +E + S
Sbjct: 108 LFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDFTS 167
Query: 490 PAVVAPAPVVEAVSTPSAAFP----------------------SDATAENVKQQGPIL-- 525
P + TP A P S A + P+L
Sbjct: 168 DQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPP 227
Query: 526 --TKHGKNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAY 583
GKNPVM LNE R GLKY+ +SE+G SH K FVM V VDGQ F+G+G NKK+AKA
Sbjct: 228 FPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKAR 287
Query: 584 AALAALEKLFPDTPLALDANKKKRAPVPVRG 614
AA +AL +F L LD R P+P G
Sbjct: 288 AAQSALAAIF---NLHLD-QTPSRQPIPSEG 314
>gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens]
Length = 739
Score = 128 bits (322), Expect = 2e-29
Identities = 100/303 (33%), Positives = 147/303 (48%), Gaps = 32/303 (10%)
Query: 337 DPLPSKMPKKPKNENPVDYTVQIPPSTTYAI-----TPMKRPMEEDGEEKSPSKKKKKIQ 391
D L + + +N N + + PPS A KRP+EE K + +
Sbjct: 60 DTLSTSSAEVKENRNVGNLAARPPPSGDRARGGAPGAKRKRPLEEGNG--GHLCKLQLVW 117
Query: 392 KKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKK 451
KK + P+ NAL++L++L+PGLQY+ VSQTGPVHAP+F ++VEV+G +FE +GP+KK
Sbjct: 118 KKLSWSVAPK--NALVQLHELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGPTKK 175
Query: 452 TAKLHVAVKVLQD-MGLPTG-----AEGRDSSKGEDSAEETEAKPAVV-------APAPV 498
AK+ A L+ + P A G G D + P + AP P
Sbjct: 176 KAKMRAAELALRSFVQFPNACQAHLAMGGGPGPGTDFTSDQADFPDTLFQEFEPPAPRPG 235
Query: 499 VEAVSTPSAAFPSDATAEN------VKQQGPI----LTKHGKNPVMELNEKRRGLKYELI 548
+ AA S A + GP +NPV+ LN R GL+Y +
Sbjct: 236 LAGGRPGDAALLSAAYGRRRLLCRALDLVGPTPATPAAPGERNPVVLLNRLRAGLRYVCL 295
Query: 549 SETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKKRA 608
+E + FVM V VDG+ F+G+G +KK+A+ AA AAL++LF + +R
Sbjct: 296 AEPAERRARSFVMAVSVDGRTFEGSGRSKKLARGQAAQAALQELFDIQMPGHAPGRARRT 355
Query: 609 PVP 611
P+P
Sbjct: 356 PMP 358
Score = 55.5 bits (132), Expect = 2e-07
Identities = 44/124 (35%), Positives = 60/124 (48%), Gaps = 11/124 (8%)
Query: 530 KNPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAAL 589
KN +++L+E R GL+Y +S+TG H F + VEV+G F+G G KK AK AA AL
Sbjct: 127 KNALVQLHELRPGLQYRTVSQTGPVHAPVFAVAVEVNGLTFEGTGPTKKKAKMRAAELAL 186
Query: 590 EKLFPDTPLALDANKKKRAPVPVRGGPKFAAKPHNPGFGMGGPMHNEVPPP---PNLRGR 646
+ F P A A+ + + GGP + + E PP P L G
Sbjct: 187 -RSFVQFPNACQAH------LAMGGGPGPGTDFTSDQADFPDTLFQEFEPPAPRPGLAG- 238
Query: 647 GRGG 650
GR G
Sbjct: 239 GRPG 242
>gi|24234747 interleukin enhancer binding factor 2 [Homo sapiens]
Length = 390
Score = 101 bits (252), Expect = 2e-21
Identities = 92/322 (28%), Positives = 148/322 (45%), Gaps = 56/322 (17%)
Query: 92 VMRVGLVAKGLLLKGDLDLELVLLCKEKPT----TALLDKVADNLAIQ-----LAAVT-E 141
V +VG KG + G +LV++ K PT AL +KV ++L Q L +T E
Sbjct: 102 VRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVESLRAQDPSEVLTMLTNE 161
Query: 142 DKYEILQSVDDAAIVIKNTKEPPLSLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQ 201
+EI S DA + I T PP L DP LD +
Sbjct: 162 TGFEISSS--DATVKILITTVPP-----------------------NLRKLDPELHLDIK 196
Query: 202 KCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSI-- 259
+ALA++RHA+WF+ A+ + ++IR+L+DL R P + PL W L+LL ++
Sbjct: 197 VLQSALAAIRHARWFEENASQ-STVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMN 255
Query: 260 GTANRPMGAGEALRRVLECLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQ 319
+P+ A RR L+ LA+G+ +P GI DPCE + +Q++ + +AQ
Sbjct: 256 NPTRQPLALNVAYRRCLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQ 315
Query: 320 HALRLAAFGQLHKVLGMDPLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGE 379
+R+ + G K+LG + S + + + V +TP ++ E+
Sbjct: 316 TLVRILSHGGFRKILGQEGDASYLASEISTWDGV------------IVTPSEKAYEK--- 360
Query: 380 EKSPSKKKKKIQKKEEKAEPPQ 401
P +KK+ +++E EPPQ
Sbjct: 361 ---PPEKKEGEEEEENTEEPPQ 379
>gi|7657625 staufen homolog 2 [Homo sapiens]
Length = 479
Score = 65.9 bits (159), Expect = 1e-10
Identities = 69/260 (26%), Positives = 101/260 (38%), Gaps = 46/260 (17%)
Query: 373 PMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVHAPIF 432
P+ E + S K K K+E ++ N + ++++ ++GP H F
Sbjct: 151 PIPERSPQNGESGKDMDDDKDANKSEISLVFEIALKRNM---PVSFEVIKESGPPHMKSF 207
Query: 433 TMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEAKPAV 492
V V S E G SKK +K A VLQ++
Sbjct: 208 VTRVSVGEFSAEGEGNSKKLSKKRAATTVLQEL-------------------------KK 242
Query: 493 VAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRRGLK-----YEL 547
+ P PVVE P F + + + GP + G NP+ L + ++ K Y L
Sbjct: 243 LPPLPVVEK---PKLFFKK--RPKTIVKAGPEYGQ-GMNPISRLAQIQQAKKEKEPDYVL 296
Query: 548 ISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKKR 607
+SE G + FVM+V+V + G G NKK+AK AA A L +L L +K
Sbjct: 297 LSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKT 356
Query: 608 APVPVRGGPKFAAKPHNPGF 627
GPK PGF
Sbjct: 357 GENKGWSGPK-------PGF 369
>gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo
sapiens]
Length = 1181
Score = 62.4 bits (150), Expect = 1e-09
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 21/194 (10%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRD 475
++ ++ Q+GP H P F V ++G F A SKK AK A+K + L A+ +D
Sbjct: 520 EFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTI--LLEEAKAKD 577
Query: 476 SSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVME 535
S K E+S+ + K E+ T + P+ + + P+ T ++E
Sbjct: 578 SGKSEESSHYSTEK----------ESEKTAESQTPTPSATSFFSGKSPVTT------LLE 621
Query: 536 -LNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGS-NKKVAKAYAALAALEKLF 593
+++ ++ L+S+ G +H+ +F V V Q F + +KKVAK AA A++ L
Sbjct: 622 CMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKALH 681
Query: 594 PDTPLALDANKKKR 607
+ ++ ++ + R
Sbjct: 682 GEATNSMASDNQVR 695
Score = 50.8 bits (120), Expect = 4e-06
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 56/238 (23%)
Query: 379 EEKSPSKKKKKIQKKEEKAEPPQAMNALMR-----------LNQLKPGLQYKLVSQTGPV 427
EE S +K+ +K E P + + +++L +++L+S+ GP
Sbjct: 582 EESSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPA 641
Query: 428 HAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
H P F V V +F S PSKK AK A + ++ + GE
Sbjct: 642 HEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL------------HGE------ 683
Query: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRR----G 542
A S A+ V++ G ++ NPV L E R
Sbjct: 684 ---------------------ATNSMASDNQVRKIGELVRYLNTNPVGGLLEYARSHGFA 722
Query: 543 LKYELISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKLFPDTPLA 599
+++L+ ++G H+ +FV + +V G+ F +KK K AA AAL L + A
Sbjct: 723 AEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 780
>gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo
sapiens]
Length = 931
Score = 61.6 bits (148), Expect = 2e-09
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRD 475
++ ++ Q+GP H P F V ++G F A SKK AK A+K + L A+ +D
Sbjct: 225 EFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTI--LLEEAKAKD 282
Query: 476 SSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVME 535
S K E+S+ + K E+ T + P+ + + P+ T ++E
Sbjct: 283 SGKSEESSHYSTEK----------ESEKTAESQTPTPSATSFFSGKSPVTT------LLE 326
Query: 536 -LNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGS-NKKVAKAYAALAALEKL 592
+++ ++ L+S+ G +H+ +F V V Q F + +KKVAK AA A++ L
Sbjct: 327 CMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 385
Score = 57.4 bits (137), Expect = 4e-08
Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 37/238 (15%)
Query: 379 EEKSPSKKKKKIQKKEEKAEPPQAMNALMR-----------LNQLKPGLQYKLVSQTGPV 427
EE S +K+ +K E P + + +++L +++L+S+ GP
Sbjct: 287 EESSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPA 346
Query: 428 HAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
H P F V V +F S PSKK AK A + ++ + E +S ++ E
Sbjct: 347 HEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL----HGEATNSMASDNQPE-- 400
Query: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRR----G 542
+ E++ + P+ V++ G ++ NPV L E R
Sbjct: 401 ---------GMISESLDNLESMMPN-----KVRKIGELVRYLNTNPVGGLLEYARSHGFA 446
Query: 543 LKYELISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKLFPDTPLA 599
+++L+ ++G H+ +FV + +V G+ F +KK K AA AAL L + A
Sbjct: 447 AEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 504
>gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo
sapiens]
Length = 1200
Score = 61.6 bits (148), Expect = 2e-09
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRD 475
++ ++ Q+GP H P F V ++G F A SKK AK A+K + L A+ +D
Sbjct: 520 EFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTI--LLEEAKAKD 577
Query: 476 SSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVME 535
S K E+S+ + K E+ T + P+ + + P+ T ++E
Sbjct: 578 SGKSEESSHYSTEK----------ESEKTAESQTPTPSATSFFSGKSPVTT------LLE 621
Query: 536 -LNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGS-NKKVAKAYAALAALEKL 592
+++ ++ L+S+ G +H+ +F V V Q F + +KKVAK AA A++ L
Sbjct: 622 CMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680
Score = 57.4 bits (137), Expect = 4e-08
Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 37/238 (15%)
Query: 379 EEKSPSKKKKKIQKKEEKAEPPQAMNALMR-----------LNQLKPGLQYKLVSQTGPV 427
EE S +K+ +K E P + + +++L +++L+S+ GP
Sbjct: 582 EESSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPA 641
Query: 428 HAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
H P F V V +F S PSKK AK A + ++ + E +S ++ E
Sbjct: 642 HEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL----HGEATNSMASDNQPE-- 695
Query: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRR----G 542
+ E++ + P+ V++ G ++ NPV L E R
Sbjct: 696 ---------GMISESLDNLESMMPN-----KVRKIGELVRYLNTNPVGGLLEYARSHGFA 741
Query: 543 LKYELISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKLFPDTPLA 599
+++L+ ++G H+ +FV + +V G+ F +KK K AA AAL L + A
Sbjct: 742 AEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
sapiens]
Length = 1226
Score = 61.6 bits (148), Expect = 2e-09
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRD 475
++ ++ Q+GP H P F V ++G F A SKK AK A+K + L A+ +D
Sbjct: 520 EFNMIEQSGPPHEPRFKFQVVINGREFPPAEAGSKKVAKQDAAMKAMTI--LLEEAKAKD 577
Query: 476 SSKGEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVME 535
S K E+S+ + K E+ T + P+ + + P+ T ++E
Sbjct: 578 SGKSEESSHYSTEK----------ESEKTAESQTPTPSATSFFSGKSPVTT------LLE 621
Query: 536 -LNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGS-NKKVAKAYAALAALEKL 592
+++ ++ L+S+ G +H+ +F V V Q F + +KKVAK AA A++ L
Sbjct: 622 CMHKLGNSCEFRLLSKEGPAHEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL 680
Score = 57.4 bits (137), Expect = 4e-08
Identities = 57/238 (23%), Positives = 100/238 (42%), Gaps = 37/238 (15%)
Query: 379 EEKSPSKKKKKIQKKEEKAEPPQAMNALMR-----------LNQLKPGLQYKLVSQTGPV 427
EE S +K+ +K E P + + +++L +++L+S+ GP
Sbjct: 582 EESSHYSTEKESEKTAESQTPTPSATSFFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPA 641
Query: 428 HAPIFTMSVEVDGNSF-EASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEET 486
H P F V V +F S PSKK AK A + ++ + E +S ++ E
Sbjct: 642 HEPKFQYCVAVGAQTFPSVSAPSKKVAKQMAAEEAMKAL----HGEATNSMASDNQPE-- 695
Query: 487 EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRR----G 542
+ E++ + P+ V++ G ++ NPV L E R
Sbjct: 696 ---------GMISESLDNLESMMPN-----KVRKIGELVRYLNTNPVGGLLEYARSHGFA 741
Query: 543 LKYELISETGGSHDKRFVMEVEVDGQKFQG-AGSNKKVAKAYAALAALEKLFPDTPLA 599
+++L+ ++G H+ +FV + +V G+ F +KK K AA AAL L + A
Sbjct: 742 AEFKLVDQSGPPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQEAADAALRVLIGENEKA 799
>gi|82659089 staufen isoform a [Homo sapiens]
Length = 496
Score = 60.1 bits (144), Expect = 7e-09
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 45/236 (19%)
Query: 369 PMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVH 428
P+ +E +G E ++ K+E Q ++ N + +++ ++GP H
Sbjct: 83 PLPERLEVNGRESE--------EENLNKSEISQVFEIALKRNL---PVNFEVARESGPPH 131
Query: 429 APIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEA 488
F V V E G SKK +K + A+ VL+++ ++
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------------KKLPP 173
Query: 489 KPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNE-----KRRGL 543
PAV P ++ + P VK Q G NP+ L + K +
Sbjct: 174 LPAVERVKPRIKKKTKPI-----------VKPQTSPEYGQGINPISRLAQIQQAKKEKEP 222
Query: 544 KYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLA 599
+Y L++E G + FVM+V+V +G G+NKKVAK AA LE L P A
Sbjct: 223 EYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 278
Score = 49.7 bits (117), Expect = 9e-06
Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 51/210 (24%)
Query: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
Query: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRR- 541
EE L K + V E+ KR
Sbjct: 96 EEEN--------------------------------------LNKSEISQVFEIALKRNL 117
Query: 542 GLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALD 601
+ +E+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL
Sbjct: 118 PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAV 177
Query: 602 ANKKKRAPVPVRGGPKFAAKPH-NPGFGMG 630
K R ++ K KP +P +G G
Sbjct: 178 ERVKPR----IKKKTKPIVKPQTSPEYGQG 203
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 186 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 245
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 246 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 289
>gi|82659087 staufen isoform b [Homo sapiens]
Length = 577
Score = 60.1 bits (144), Expect = 7e-09
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 45/236 (19%)
Query: 369 PMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVH 428
P+ +E +G E ++ K+E Q ++ N + +++ ++GP H
Sbjct: 164 PLPERLEVNGRESE--------EENLNKSEISQVFEIALKRNL---PVNFEVARESGPPH 212
Query: 429 APIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEA 488
F V V E G SKK +K + A+ VL+++ ++
Sbjct: 213 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------------KKLPP 254
Query: 489 KPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNE-----KRRGL 543
PAV P ++ + P VK Q G NP+ L + K +
Sbjct: 255 LPAVERVKPRIKKKTKPI-----------VKPQTSPEYGQGINPISRLAQIQQAKKEKEP 303
Query: 544 KYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLA 599
+Y L++E G + FVM+V+V +G G+NKKVAK AA LE L P A
Sbjct: 304 EYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 359
Score = 50.8 bits (120), Expect = 4e-06
Identities = 76/311 (24%), Positives = 115/311 (36%), Gaps = 77/311 (24%)
Query: 348 KNENPVDYTVQIPPSTTYAITPMK--RPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNA 405
KN++ + + PSTT ++ RP++ PS E P +NA
Sbjct: 23 KNQSLLSQPLMSIPSTTSSLPSENAGRPIQNSA---LPSASITSTSAAAESITPTVELNA 79
Query: 406 L-MRLNQ---LKPGLQYKLVSQTG-----------------PVHAPIFTMSVEVDGNSFE 444
L M+L + KP Y + T PV ++ + + V G F
Sbjct: 80 LCMKLGKKPMYKPVDPYSRMQSTYNYNMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFN 139
Query: 445 ASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDSAEETEAKPAVVAPAPVVEA 501
G +++ AK A K +LQ+ LP E G +S EE
Sbjct: 140 GKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRESEEEN--------------- 180
Query: 502 VSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRR-GLKYELISETGGSHDKRFV 560
L K + V E+ KR + +E+ E+G H K FV
Sbjct: 181 -----------------------LNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNFV 217
Query: 561 MEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDANKKKRAPVPVRGGPKFAA 620
+V V +G G +KK++K AA+A LE+L PL K R ++ K
Sbjct: 218 TKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVERVKPR----IKKKTKPIV 273
Query: 621 KPH-NPGFGMG 630
KP +P +G G
Sbjct: 274 KPQTSPEYGQG 284
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 267 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 326
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 327 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 370
>gi|82659085 staufen isoform a [Homo sapiens]
Length = 496
Score = 60.1 bits (144), Expect = 7e-09
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 45/236 (19%)
Query: 369 PMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVH 428
P+ +E +G E ++ K+E Q ++ N + +++ ++GP H
Sbjct: 83 PLPERLEVNGRESE--------EENLNKSEISQVFEIALKRNL---PVNFEVARESGPPH 131
Query: 429 APIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEA 488
F V V E G SKK +K + A+ VL+++ ++
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------------KKLPP 173
Query: 489 KPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNE-----KRRGL 543
PAV P ++ + P VK Q G NP+ L + K +
Sbjct: 174 LPAVERVKPRIKKKTKPI-----------VKPQTSPEYGQGINPISRLAQIQQAKKEKEP 222
Query: 544 KYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLA 599
+Y L++E G + FVM+V+V +G G+NKKVAK AA LE L P A
Sbjct: 223 EYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 278
Score = 49.7 bits (117), Expect = 9e-06
Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 51/210 (24%)
Query: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
Query: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRR- 541
EE L K + V E+ KR
Sbjct: 96 EEEN--------------------------------------LNKSEISQVFEIALKRNL 117
Query: 542 GLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALD 601
+ +E+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL
Sbjct: 118 PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAV 177
Query: 602 ANKKKRAPVPVRGGPKFAAKPH-NPGFGMG 630
K R ++ K KP +P +G G
Sbjct: 178 ERVKPR----IKKKTKPIVKPQTSPEYGQG 203
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 186 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 245
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 246 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 289
>gi|82659083 staufen isoform a [Homo sapiens]
Length = 496
Score = 60.1 bits (144), Expect = 7e-09
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 45/236 (19%)
Query: 369 PMKRPMEEDGEEKSPSKKKKKIQKKEEKAEPPQAMNALMRLNQLKPGLQYKLVSQTGPVH 428
P+ +E +G E ++ K+E Q ++ N + +++ ++GP H
Sbjct: 83 PLPERLEVNGRESE--------EENLNKSEISQVFEIALKRNL---PVNFEVARESGPPH 131
Query: 429 APIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSKGEDSAEETEA 488
F V V E G SKK +K + A+ VL+++ ++
Sbjct: 132 MKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------------KKLPP 173
Query: 489 KPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNE-----KRRGL 543
PAV P ++ + P VK Q G NP+ L + K +
Sbjct: 174 LPAVERVKPRIKKKTKPI-----------VKPQTSPEYGQGINPISRLAQIQQAKKEKEP 222
Query: 544 KYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLA 599
+Y L++E G + FVM+V+V +G G+NKKVAK AA LE L P A
Sbjct: 223 EYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILGFKVPQA 278
Score = 49.7 bits (117), Expect = 9e-06
Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 51/210 (24%)
Query: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
Query: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRR- 541
EE L K + V E+ KR
Sbjct: 96 EEEN--------------------------------------LNKSEISQVFEIALKRNL 117
Query: 542 GLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALD 601
+ +E+ E+G H K FV +V V +G G +KK++K AA+A LE+L PL
Sbjct: 118 PVNFEVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAV 177
Query: 602 ANKKKRAPVPVRGGPKFAAKPH-NPGFGMG 630
K R ++ K KP +P +G G
Sbjct: 178 ERVKPR----IKKKTKPIVKPQTSPEYGQG 203
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 186 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 245
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 246 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 289
>gi|19743838 TAR RNA binding protein 2 isoform b [Homo sapiens]
Length = 345
Score = 58.2 bits (139), Expect = 3e-08
Identities = 60/199 (30%), Positives = 84/199 (42%), Gaps = 21/199 (10%)
Query: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMG----LPTGAEG 473
Y L+ G H P FT V V S GPSKK AK A L+ + L E
Sbjct: 27 YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
Query: 474 RDSSKGEDSA--EETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGK- 530
S DS+ E+ A A PV V T S ++ Q P+ + +
Sbjct: 87 SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPP---------MELQPPVSPQQSEC 137
Query: 531 NPVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA 585
NPV L E ++G + Y + E+G +H K F M V+ G+G++KK+AK AA
Sbjct: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 197
Query: 586 LAALEKLFPDTPLALDANK 604
L ++ A D N+
Sbjct: 198 AKMLLRVHTVPLDARDGNE 216
Score = 35.8 bits (81), Expect = 0.14
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462
+Y + ++GP H FTM+ V+ SG SKK AK + A K+L
Sbjct: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
>gi|19743840 TAR RNA binding protein 2 isoform a [Homo sapiens]
Length = 366
Score = 58.2 bits (139), Expect = 3e-08
Identities = 60/199 (30%), Positives = 84/199 (42%), Gaps = 21/199 (10%)
Query: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMG----LPTGAEG 473
Y L+ G H P FT V V S GPSKK AK A L+ + L E
Sbjct: 48 YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 107
Query: 474 RDSSKGEDSA--EETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGK- 530
S DS+ E+ A A PV V T S ++ Q P+ + +
Sbjct: 108 SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPP---------MELQPPVSPQQSEC 158
Query: 531 NPVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA 585
NPV L E ++G + Y + E+G +H K F M V+ G+G++KK+AK AA
Sbjct: 159 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 218
Query: 586 LAALEKLFPDTPLALDANK 604
L ++ A D N+
Sbjct: 219 AKMLLRVHTVPLDARDGNE 237
Score = 35.8 bits (81), Expect = 0.14
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462
+Y + ++GP H FTM+ V+ SG SKK AK + A K+L
Sbjct: 177 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 222
>gi|85068512 TAR RNA binding protein 2 isoform b [Homo sapiens]
Length = 345
Score = 58.2 bits (139), Expect = 3e-08
Identities = 60/199 (30%), Positives = 84/199 (42%), Gaps = 21/199 (10%)
Query: 418 YKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMG----LPTGAEG 473
Y L+ G H P FT V V S GPSKK AK A L+ + L E
Sbjct: 27 YDLLKAEGQAHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALED 86
Query: 474 RDSSKGEDSA--EETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGK- 530
S DS+ E+ A A PV V T S ++ Q P+ + +
Sbjct: 87 SSSFSPLDSSLPEDIPVFTAAAAATPVPSVVLTRSPP---------MELQPPVSPQQSEC 137
Query: 531 NPVMELNE--KRRGLK---YELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAA 585
NPV L E ++G + Y + E+G +H K F M V+ G+G++KK+AK AA
Sbjct: 138 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 197
Query: 586 LAALEKLFPDTPLALDANK 604
L ++ A D N+
Sbjct: 198 AKMLLRVHTVPLDARDGNE 216
Score = 35.8 bits (81), Expect = 0.14
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 417 QYKLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVL 462
+Y + ++GP H FTM+ V+ SG SKK AK + A K+L
Sbjct: 156 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 201
>gi|82659091 staufen isoform c [Homo sapiens]
Length = 502
Score = 57.0 bits (136), Expect = 6e-08
Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 34/186 (18%)
Query: 419 KLVSQTGPVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVKVLQDMGLPTGAEGRDSSK 478
++ ++GP H F V V E G SKK +K + A+ VL+++
Sbjct: 128 QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEEL------------- 174
Query: 479 GEDSAEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNE 538
++ PAV P ++ + P VK Q G NP+ L +
Sbjct: 175 -----KKLPPLPAVERVKPRIKKKTKPI-----------VKPQTSPEYGQGINPISRLAQ 218
Query: 539 -----KRRGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLF 593
K + +Y L++E G + FVM+V+V +G G+NKKVAK AA LE L
Sbjct: 219 IQQAKKEKEPEYTLLTERGLPRRREFVMQVKVGNHTAEGTGTNKKVAKRNAAENMLEILG 278
Query: 594 PDTPLA 599
P A
Sbjct: 279 FKVPQA 284
Score = 46.2 bits (108), Expect = 1e-04
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 43/209 (20%)
Query: 426 PVHAPIFTMSVEVDGNSFEASGPSKKTAKLHVAVK---VLQDMGLPTGAEGRDSSKGEDS 482
PV ++ + + V G F G +++ AK A K +LQ+ LP E G +S
Sbjct: 40 PVPPLLYQVELSVGGQQFNGKGKTRQAAKHDAAAKALRILQNEPLPERLE----VNGRES 95
Query: 483 AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVKQQGPILTKHGKNPVMELNEKRRG 542
EE K + Q I K + +N +
Sbjct: 96 EEENLNK--------------------------SEISQVFEIALKRN----LPVNFESFP 125
Query: 543 LKYELISETGGSHDKRFVMEVEVDGQKFQGAGSNKKVAKAYAALAALEKLFPDTPLALDA 602
LK ++ E+G H K FV +V V +G G +KK++K AA+A LE+L PL
Sbjct: 126 LK-QVARESGPPHMKNFVTKVSVGEFVGEGEGKSKKISKKNAAIAVLEELKKLPPLPAVE 184
Query: 603 NKKKRAPVPVRGGPKFAAKPH-NPGFGMG 630
K R ++ K KP +P +G G
Sbjct: 185 RVKPR----IKKKTKPIVKPQTSPEYGQG 209
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 385 KKKKKIQKKEEKAEPPQAMNALMRLNQLKPGL-----QYKLVSQTGPVHAPIFTMSVEVD 439
KK K I K + E Q +N + RL Q++ +Y L+++ G F M V+V
Sbjct: 192 KKTKPIVKPQTSPEYGQGINPISRLAQIQQAKKEKEPEYTLLTERGLPRRREFVMQVKVG 251
Query: 440 GNSFEASGPSKKTAKLHVAVKVLQDMG--LPTGAEGRDSSKGED 481
++ E +G +KK AK + A +L+ +G +P + + K E+
Sbjct: 252 NHTAEGTGTNKKVAKRNAAENMLEILGFKVPQAQPTKPALKSEE 295
>gi|208431829 eukaryotic translation initiation factor 2-alpha
kinase 2 isoform b [Homo sapiens]
Length = 510
Score = 47.0 bits (110), Expect = 6e-05
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 15/83 (18%)
Query: 535 ELNEKRRG----LKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAAL 589
ELN R+ LKY+ + +G HD+RF +V +DG++F +G G +KK AK AA A+
Sbjct: 13 ELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAV 72
Query: 590 EKLFPDTPLALDANKKKRAPVPV 612
E L NK+K+A P+
Sbjct: 73 EIL----------NKEKKAVSPL 85
Score = 33.9 bits (76), Expect = 0.53
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 416 LQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAK---LHVAVKVL 462
L+Y+ + +GP H FT V +DG F E G SKK AK +AV++L
Sbjct: 25 LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEIL 75
>gi|208431827 eukaryotic translation initiation factor 2-alpha
kinase 2 isoform a [Homo sapiens]
Length = 551
Score = 47.0 bits (110), Expect = 6e-05
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 15/83 (18%)
Query: 535 ELNEKRRG----LKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAAL 589
ELN R+ LKY+ + +G HD+RF +V +DG++F +G G +KK AK AA A+
Sbjct: 13 ELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAV 72
Query: 590 EKLFPDTPLALDANKKKRAPVPV 612
E L NK+K+A P+
Sbjct: 73 EIL----------NKEKKAVSPL 85
Score = 33.9 bits (76), Expect = 0.53
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 416 LQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAK---LHVAVKVL 462
L+Y+ + +GP H FT V +DG F E G SKK AK +AV++L
Sbjct: 25 LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEIL 75
>gi|4506103 eukaryotic translation initiation factor 2-alpha kinase
2 isoform a [Homo sapiens]
Length = 551
Score = 47.0 bits (110), Expect = 6e-05
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 15/83 (18%)
Query: 535 ELNEKRRG----LKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAAL 589
ELN R+ LKY+ + +G HD+RF +V +DG++F +G G +KK AK AA A+
Sbjct: 13 ELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAV 72
Query: 590 EKLFPDTPLALDANKKKRAPVPV 612
E L NK+K+A P+
Sbjct: 73 EIL----------NKEKKAVSPL 85
Score = 33.9 bits (76), Expect = 0.53
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 416 LQYKLVSQTGPVHAPIFTMSVEVDGNSF-EASGPSKKTAK---LHVAVKVL 462
L+Y+ + +GP H FT V +DG F E G SKK AK +AV++L
Sbjct: 25 LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEIL 75
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,263,111
Number of Sequences: 37866
Number of extensions: 1614908
Number of successful extensions: 10741
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 8158
Number of HSP's gapped (non-prelim): 1668
length of query: 706
length of database: 18,247,518
effective HSP length: 109
effective length of query: 597
effective length of database: 14,120,124
effective search space: 8429714028
effective search space used: 8429714028
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.