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Search of human proteins with 20270307
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20270307 coiled-coil domain containing 74A [Homo sapiens]
(378 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20270307 coiled-coil domain containing 74A [Homo sapiens] 756 0.0
gi|46409266 coiled-coil domain containing 74B [Homo sapiens] 736 0.0
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 42 7e-04
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 42 7e-04
gi|13376725 coiled-coil domain containing 92 [Homo sapiens] 42 7e-04
gi|153090207 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090203 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090201 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090191 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090182 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|148540145 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090205 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090199 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090197 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090195 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090187 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|153090185 Golgi-localized syntaphilin-related protein isoform... 40 0.005
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 39 0.006
gi|153090209 Golgi-localized syntaphilin-related protein isoform... 39 0.008
gi|153090193 Golgi-localized syntaphilin-related protein isoform... 39 0.008
gi|153090189 Golgi-localized syntaphilin-related protein isoform... 39 0.008
gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo s... 37 0.029
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 37 0.029
gi|17017963 forkhead box P2 isoform I [Homo sapiens] 37 0.038
gi|115334682 SNAP25-interacting protein [Homo sapiens] 37 0.038
gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens] 36 0.050
gi|154800457 centrosomal protein 68kDa [Homo sapiens] 35 0.085
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 35 0.15
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi... 35 0.15
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi... 35 0.15
>gi|20270307 coiled-coil domain containing 74A [Homo sapiens]
Length = 378
Score = 756 bits (1951), Expect = 0.0
Identities = 378/378 (100%), Positives = 378/378 (100%)
Query: 1 MSGAGVAAGTRPPSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDPQKRNLDLEKSLQFL 60
MSGAGVAAGTRPPSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDPQKRNLDLEKSLQFL
Sbjct: 1 MSGAGVAAGTRPPSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDPQKRNLDLEKSLQFL 60
Query: 61 QQQHSEMLAKLHEEIEHLKRENKDLHYKLIMNQTSQKKDGPSGNHLSRASAPLGARWVCI 120
QQQHSEMLAKLHEEIEHLKRENKDLHYKLIMNQTSQKKDGPSGNHLSRASAPLGARWVCI
Sbjct: 61 QQQHSEMLAKLHEEIEHLKRENKDLHYKLIMNQTSQKKDGPSGNHLSRASAPLGARWVCI 120
Query: 121 NGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISN 180
NGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISN
Sbjct: 121 NGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISN 180
Query: 181 SGKARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKVPGVQGQARKEKAEASNAGAA 240
SGKARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKVPGVQGQARKEKAEASNAGAA
Sbjct: 181 SGKARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKVPGVQGQARKEKAEASNAGAA 240
Query: 241 CMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELRHLKSLL 300
CMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELRHLKSLL
Sbjct: 241 CMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELRHLKSLL 300
Query: 301 EGSQRPQAAPEEASFPRDQEATHFPKVSTKSLSKKCLSPPVAERAILPALKQTPKNNFAE 360
EGSQRPQAAPEEASFPRDQEATHFPKVSTKSLSKKCLSPPVAERAILPALKQTPKNNFAE
Sbjct: 301 EGSQRPQAAPEEASFPRDQEATHFPKVSTKSLSKKCLSPPVAERAILPALKQTPKNNFAE 360
Query: 361 RQKRLQAMQKRRLHRSVL 378
RQKRLQAMQKRRLHRSVL
Sbjct: 361 RQKRLQAMQKRRLHRSVL 378
>gi|46409266 coiled-coil domain containing 74B [Homo sapiens]
Length = 380
Score = 736 bits (1900), Expect = 0.0
Identities = 371/380 (97%), Positives = 372/380 (97%), Gaps = 2/380 (0%)
Query: 1 MSGAGVAAGTRPPSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDPQKRNLDLEKSLQFL 60
MSGAGVAAGTRPPSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDPQKRNLDLEKSLQFL
Sbjct: 1 MSGAGVAAGTRPPSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDPQKRNLDLEKSLQFL 60
Query: 61 QQQHSEMLAKLHEEIEHLKRENKDLHYKLIMNQTSQKKDGPSGNHLSRASAPLGARWVCI 120
QQQHSEMLAKLHEEIEHLKRENKDL YKLIMNQTSQKKDGPSGNHLSRASAPLGARWVCI
Sbjct: 61 QQQHSEMLAKLHEEIEHLKRENKDLRYKLIMNQTSQKKDGPSGNHLSRASAPLGARWVCI 120
Query: 121 NGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISN 180
NGVWVEPGGPSPARLKEGSSRTHRPGGK GRLAGGSADTVRSPADSLS SSFQSVKSISN
Sbjct: 121 NGVWVEPGGPSPARLKEGSSRTHRPGGKHGRLAGGSADTVRSPADSLSTSSFQSVKSISN 180
Query: 181 SGKARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKVPGVQGQARKEKAEASNAGAA 240
SGKARPQPGSFNKQDSKADV QKADLEEEPLLHNSKLDKVPGVQGQARKEKAEASNAGAA
Sbjct: 181 SGKARPQPGSFNKQDSKADVPQKADLEEEPLLHNSKLDKVPGVQGQARKEKAEASNAGAA 240
Query: 241 CMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELRHLKSLL 300
CMGNSQHQGRQMGA AHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQEL+HLKSLL
Sbjct: 241 CMGNSQHQGRQMGAAAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELQHLKSLL 300
Query: 301 EGSQRPQAAPEEASFPRDQEATHFPKVSTKSLSKKC--LSPPVAERAILPALKQTPKNNF 358
EGSQRPQA PEEASFPRDQEATHFPKVSTKSLSKKC LSPPVAERAILPALKQTPKNNF
Sbjct: 301 EGSQRPQAVPEEASFPRDQEATHFPKVSTKSLSKKCLLLSPPVAERAILPALKQTPKNNF 360
Query: 359 AERQKRLQAMQKRRLHRSVL 378
AERQKRLQAMQKRRLHRSVL
Sbjct: 361 AERQKRLQAMQKRRLHRSVL 380
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 42.4 bits (98), Expect = 7e-04
Identities = 60/227 (26%), Positives = 89/227 (39%), Gaps = 32/227 (14%)
Query: 13 PSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDP--QKRNLDLEKSLQFLQQQHSEMLAK 70
P P P + R R R + S R S Q P K + L+ +++HSE +
Sbjct: 364 PPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRR 423
Query: 71 LHEEIE-HLKRENKDLHYKLIMNQTSQKKDGPSGNHLSRASAPLGARWVCINGVWVEPGG 129
L E + HL+ + + + ++ + GP A GAR EP G
Sbjct: 424 LPEPRQLHLQPVGANSVERAARRRRTRPEPGP---------ARRGAR--------AEPPG 466
Query: 130 P----SPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSL----SMSSFQSVKSISNS 181
P P GSS P G+ GR AGG A RSP D L + S+
Sbjct: 467 PPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPL 526
Query: 182 GKARPQPG--SFNKQDSKADVSQKADLEEEPLLHNSKLDKVPGVQGQ 226
+ P+PG F S+ D+ + + +P +H + PG QG+
Sbjct: 527 RLSHPEPGVVPFQNLRSQRDLRNPSH-QRKPGVHVTS-SVQPGFQGR 571
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 42.4 bits (98), Expect = 7e-04
Identities = 60/227 (26%), Positives = 89/227 (39%), Gaps = 32/227 (14%)
Query: 13 PSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDP--QKRNLDLEKSLQFLQQQHSEMLAK 70
P P P + R R R + S R S Q P K + L+ +++HSE +
Sbjct: 364 PPRPWPCALRPRPRLRAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRR 423
Query: 71 LHEEIE-HLKRENKDLHYKLIMNQTSQKKDGPSGNHLSRASAPLGARWVCINGVWVEPGG 129
L E + HL+ + + + ++ + GP A GAR EP G
Sbjct: 424 LPEPRQLHLQPVGANSVERAARRRRTRPEPGP---------ARRGAR--------AEPPG 466
Query: 130 P----SPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSL----SMSSFQSVKSISNS 181
P P GSS P G+ GR AGG A RSP D L + S+
Sbjct: 467 PPTLQDPPASHLGSSPAQAPSGEAGRRAGGGAVGARSPGDVLGSGGGLIGSDSLPPADPL 526
Query: 182 GKARPQPG--SFNKQDSKADVSQKADLEEEPLLHNSKLDKVPGVQGQ 226
+ P+PG F S+ D+ + + +P +H + PG QG+
Sbjct: 527 RLSHPEPGVVPFQNLRSQRDLRNPSH-QRKPGVHVTS-SVQPGFQGR 571
>gi|13376725 coiled-coil domain containing 92 [Homo sapiens]
Length = 331
Score = 42.4 bits (98), Expect = 7e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 54 EKSLQFLQQQHSEMLAKLHEEIEHLKRENKDLHYKLIMNQTSQKKDGPS 102
+K+L FLQ++H+ L LH EI L++ DL Y+L + + Q DG S
Sbjct: 31 QKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDGTS 79
>gi|153090207 Golgi-localized syntaphilin-related protein isoform c
[Homo sapiens]
Length = 660
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 113 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 172
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 173 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 230
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 231 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 289
Query: 295 H 295
H
Sbjct: 290 H 290
>gi|153090203 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 115 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 174
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 175 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 232
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 233 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 291
Query: 295 H 295
H
Sbjct: 292 H 292
>gi|153090201 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 115 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 174
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 175 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 232
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 233 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 291
Query: 295 H 295
H
Sbjct: 292 H 292
>gi|153090191 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 115 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 174
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 175 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 232
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 233 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 291
Query: 295 H 295
H
Sbjct: 292 H 292
>gi|153090182 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 115 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 174
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 175 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 232
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 233 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 291
Query: 295 H 295
H
Sbjct: 292 H 292
>gi|148540145 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 115 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 174
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 175 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 232
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 233 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 291
Query: 295 H 295
H
Sbjct: 292 H 292
>gi|153090205 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 116 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 175
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 176 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 233
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 234 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 292
Query: 295 H 295
H
Sbjct: 293 H 293
>gi|153090199 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 116 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 175
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 176 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 233
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 234 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 292
Query: 295 H 295
H
Sbjct: 293 H 293
>gi|153090197 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 116 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 175
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 176 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 233
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 234 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 292
Query: 295 H 295
H
Sbjct: 293 H 293
>gi|153090195 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 116 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 175
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 176 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 233
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 234 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 292
Query: 295 H 295
H
Sbjct: 293 H 293
>gi|153090187 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 116 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 175
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 176 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 233
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 234 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 292
Query: 295 H 295
H
Sbjct: 293 H 293
>gi|153090185 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 39.7 bits (91), Expect = 0.005
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 119 CINGVWVEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSI 178
C G+ E S KE S +PG + + S ++ +P +S + + S
Sbjct: 116 CTIGMVGEGSIQSSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSS 175
Query: 179 SNSGK-ARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEA 234
N G R S +K S ++ DL +L ++L V P +
Sbjct: 176 RNRGPHGRSNGASSHKPGSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSG 233
Query: 235 SNAGAACMGNSQHQGRQMGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELR 294
S G+ C + GR M G + + P P + T L+Q EV +R L T L +++
Sbjct: 234 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRL 292
Query: 295 H 295
H
Sbjct: 293 H 293
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 39.3 bits (90), Expect = 0.006
Identities = 57/277 (20%), Positives = 94/277 (33%), Gaps = 44/277 (15%)
Query: 5 GVAAGTRPPSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDPQKRNLDLEKSLQFLQQQH 64
G + PPS+P P Q P V+ +P SD + + EK
Sbjct: 287 GPYSSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDESDSSSEEEK--------- 337
Query: 65 SEMLAKLHEEIEHLKRENKDLHYKLIMNQTSQKKDGPSGNHLSRASAPLGARWVCINGVW 124
K + K K K +S D S S P G N
Sbjct: 338 -----KPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSN--- 389
Query: 125 VEPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISNS--- 181
+P + + + ++ +P G +L AD+ S +S S ++ K ++ +
Sbjct: 390 -KPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPK 448
Query: 182 ----------GKARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDK---------VPG 222
K PQ +DS +D + EEE S + K P
Sbjct: 449 ATAKAALSLPAKQAPQ----GSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPS 504
Query: 223 VQGQARKEKAEASNAGAACMGNSQHQGRQMGAGAHPP 259
A+K KAE+SN+ ++ + + + + G G+ P
Sbjct: 505 KPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRP 541
>gi|153090209 Golgi-localized syntaphilin-related protein isoform d
[Homo sapiens]
Length = 544
Score = 38.9 bits (89), Expect = 0.008
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 136 KEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISNSGK-ARPQPGSFNKQ 194
KE S +PG + + S ++ +P +S + + S N G R S +K
Sbjct: 14 KESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSSRNRGPHGRSNGASSHKP 73
Query: 195 DSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEASNAGAACMGNSQHQGRQ 251
S ++ DL +L ++L V P + S G+ C + GR
Sbjct: 74 GSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSGSYKGSDCSPIMRRSGRY 131
Query: 252 MGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELRH 295
M G + + P P + T L+Q EV +R L T L +++ H
Sbjct: 132 MSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRLH 174
>gi|153090193 Golgi-localized syntaphilin-related protein isoform d
[Homo sapiens]
Length = 544
Score = 38.9 bits (89), Expect = 0.008
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 136 KEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISNSGK-ARPQPGSFNKQ 194
KE S +PG + + S ++ +P +S + + S N G R S +K
Sbjct: 14 KESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSSRNRGPHGRSNGASSHKP 73
Query: 195 DSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEASNAGAACMGNSQHQGRQ 251
S ++ DL +L ++L V P + S G+ C + GR
Sbjct: 74 GSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSGSYKGSDCSPIMRRSGRY 131
Query: 252 MGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELRH 295
M G + + P P + T L+Q EV +R L T L +++ H
Sbjct: 132 MSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRLH 174
>gi|153090189 Golgi-localized syntaphilin-related protein isoform d
[Homo sapiens]
Length = 544
Score = 38.9 bits (89), Expect = 0.008
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 136 KEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISNSGK-ARPQPGSFNKQ 194
KE S +PG + + S ++ +P +S + + S N G R S +K
Sbjct: 14 KESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSSRNRGPHGRSNGASSHKP 73
Query: 195 DSKADVSQKADLEEEPLLHNSKLDKV---PGVQGQARKEKAEASNAGAACMGNSQHQGRQ 251
S ++ DL +L ++L V P + S G+ C + GR
Sbjct: 74 GSSPSSPREKDLLS--MLCRNQLSPVNIHPSYAPSSPSSSNSGSYKGSDCSPIMRRSGRY 131
Query: 252 MGAGAHPPMILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELRH 295
M G + + P P + T L+Q EV +R L T L +++ H
Sbjct: 132 MSCGENHGVRPPNPEQYLTPLQQKEVTVRHL-KTKLKESERRLH 174
>gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo
sapiens]
Length = 688
Score = 37.0 bits (84), Expect = 0.029
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 17/224 (7%)
Query: 141 RTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISNSGKARPQPGSFNKQDSKADV 200
R GG RG G + VR+P+D+ + +S S K S+S R ++++Q +D
Sbjct: 369 RKTEEGGDRGA-PGLALARVRAPSDTTNGTS--SSKGTSHSKGQRSSSSTYHRQRRHSDF 425
Query: 201 SQKADLEEEPLLHNSKLDKVPGVQGQARKEKAEASNAGAACMGNSQHQGRQMGAGAHPPM 260
+ P + + + + KA S AG+ G M + AH P
Sbjct: 426 CGPSPAPLHPKRSPTSTGEAELKEERLPGRKASCSTAGSGSRGLPPSS--PMVSSAHNPN 483
Query: 261 ILPLPLRKPTTLRQCEVLIRELWNTNLLQTQELRHLKSLLEGSQRPQAAPEEASFPRDQE 320
+P R+ + L + T+ ++ + G++RP P +
Sbjct: 484 KAEIPERRKDSTSTPNNLPPSM------MTRRNTYVCTERPGAERPSLLPNGK-----EN 532
Query: 321 ATHFPKVSTKSLSKKCLSPPVAERAILPALKQTPKNNFAERQKR 364
++ P+V S S L+PP ER+ L A T ++ F Q R
Sbjct: 533 SSGTPRVPPASPSSHSLAPPSGERSRL-ARGSTIRSTFHGGQVR 575
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 37.0 bits (84), Expect = 0.029
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 126 EPGGPSPARLKEGSSRTHRPGGKRGRLAGGSADTVRSPADSLSMSSFQSVKSISNSGKAR 185
+PG P AR KE +RT +R L+G + + S + S S S SV S+S+ A
Sbjct: 661 KPGDPREARRKERPARTPP---RRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSAT 717
Query: 186 PQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKVPGVQGQARKEKAEASNAGAACMGNS 245
S + DS+ ADL P+ S P Q RKEK ++
Sbjct: 718 SSSSSAHSVDSE---DMYADL-ASPVSSASSRSPAP---AQTRKEKGKSKKEDGV----- 765
Query: 246 QHQGRQMGAGAHPP 259
+ + R+ + PP
Sbjct: 766 KEEKRKRDSSTQPP 779
>gi|17017963 forkhead box P2 isoform I [Homo sapiens]
Length = 715
Score = 36.6 bits (83), Expect = 0.038
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 15 SPTPGSRRRRQRPSVGVQSLRPQ--SPQLRQSDPQKRNLDLEKSLQFLQQQHSEMLAKLH 72
SP ++R + V V + PQ +PQ Q Q++ L ++ LQQQ + ML +
Sbjct: 75 SPKSSDKQRPLQVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQALLQQQQAVMLQQQQ 134
Query: 73 EEIEHLKRENKDLHYKLIMNQTSQKK 98
+ E K++ + LH +L+ Q Q++
Sbjct: 135 LQ-EFYKKQQEQLHLQLLQQQQQQQQ 159
>gi|115334682 SNAP25-interacting protein [Homo sapiens]
Length = 1183
Score = 36.6 bits (83), Expect = 0.038
Identities = 51/199 (25%), Positives = 71/199 (35%), Gaps = 35/199 (17%)
Query: 127 PGGPSPA------------------RLKEGSSRT--HRPGGKRGRLAGGSADTVRSPADS 166
PGGP P R GSS PGGK + GSA T +P
Sbjct: 485 PGGPPPPHSPYSGPPSRGSPVRQSFRKDSGSSSVFAESPGGKTR--SAGSASTAGAPPSE 542
Query: 167 LSMSSFQSVKSISNSGKARPQPGSFNKQDSKADVSQKADLEEEPLLHNSKLDKVPGVQGQ 226
L F S G P P + + + +K L+ ++ L G + +
Sbjct: 543 L----FPGPGERSLVGFGPPVPAKDTETRERMEAMEKQIASLTGLVQSALLR---GSEPE 595
Query: 227 ARKEKAEASNAGAACMGNSQHQGRQMGA----GAHPPMILPLPLRKPTTLR--QCEVLIR 280
EK E SN A GR GA G PP P +PT + Q ++ +R
Sbjct: 596 TPSEKIEGSNGAATPSAPCGSGGRSSGATPVSGPPPPSASSTPAGQPTAVSRLQMQLHLR 655
Query: 281 ELWNTNLLQTQELRHLKSL 299
L N+ +L+ L+ L
Sbjct: 656 GLQNSASDLRGQLQQLRKL 674
>gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
Length = 269
Score = 36.2 bits (82), Expect = 0.050
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 12/75 (16%)
Query: 7 AAGTRPPSSPTPGSRRRRQRPSVGVQSLRPQSPQLRQSDPQKRNLDLEKSLQFLQQQHSE 66
+AG R P +P R+RR+R ++ V+ R ++ ++RN ++++ L L ++
Sbjct: 181 SAGKRGPDRGSPEYRQRRERNNIAVRKSRDKA--------KRRNQEMQQKLVELSAENE- 231
Query: 67 MLAKLHEEIEHLKRE 81
KLH+ +E L R+
Sbjct: 232 ---KLHQRVEQLTRD 243
Score = 34.7 bits (78), Expect = 0.15
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 12 PPSSPTPGSRRRRQRP--------SVGVQSLRPQSPQLRQSDPQKRNLDLEKSLQFLQQQ 63
PP+SP P RQ P S G + SP+ RQ ++ N+ + KS +++
Sbjct: 157 PPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSPEYRQR-RERNNIAVRKSRDKAKRR 215
Query: 64 HSEMLAKLHEEIEHLKRENKDLHYKL 89
+ EM KL E L EN+ LH ++
Sbjct: 216 NQEMQQKLVE----LSAENEKLHQRV 237
>gi|154800457 centrosomal protein 68kDa [Homo sapiens]
Length = 757
Score = 35.4 bits (80), Expect = 0.085
Identities = 39/158 (24%), Positives = 58/158 (36%), Gaps = 27/158 (17%)
Query: 114 GARWVCINGVWV--EPGGPSPARLKEGSSRTHRPGGKRGRLA-GGSADTVRSPADSLSMS 170
GA + W+ +PGGPS A + S P +R A G D L
Sbjct: 57 GAEGIPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSG 116
Query: 171 SFQSVKSISNSGKARPQPGSFNK--------------QDSKADVSQKADLEEEPLLHNSK 216
Q K+ +S + PQ S + S AD+ Q DL ++P H+S
Sbjct: 117 ESQVEKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQP--HSSG 174
Query: 217 LDKV--------PGVQGQARKEKAEASNAGAACMGNSQ 246
L + PG Q AS+ G++ G+ +
Sbjct: 175 LSCLSQWKSVLSPGSAAQPSSCSISASSTGSSLQGHQE 212
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 34.7 bits (78), Expect = 0.15
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 14/175 (8%)
Query: 193 KQDSKADVSQKA-DLEEEPLLHNSKLD------KVPGVQGQARKEKAEASNAGAACMGNS 245
KQ K + KA + E E + N + D KVP V + ++ E G +
Sbjct: 903 KQVQKQTLPSKAFEREVERPVANRECDPAELEEKVPKVILERDTQRGEPEGGSQDQKGQA 962
Query: 246 QHQGRQMGAGAHP---PMILPLPLRKPTTLRQCEVLIRE----LWNTNLLQTQELRHLKS 298
+ G GA P P+P + R V R L N + ++ +++
Sbjct: 963 SSPTPEPGVGAGDLPGPTSAPVPSGSQSGGRGSPVSPRRHQKGLLNCKMPPAEKASRIRA 1022
Query: 299 LLEGSQRPQAAPEEASFPRDQEATHFPKVSTKSLSKKCLSPPVAERAILPALKQT 353
+ S+ Q +P+ P EA P+ S S+K L+PP +LP++K T
Sbjct: 1023 AEKVSRGDQESPDACLPPTVPEAPAPPQKPLNSQSQKHLAPPPLLSPLLPSIKPT 1077
>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 34.7 bits (78), Expect = 0.15
Identities = 59/245 (24%), Positives = 89/245 (36%), Gaps = 29/245 (11%)
Query: 6 VAAGTRP-PSSPTPGSRRRRQRPSVGVQSLR-----PQSPQLRQSD----PQKRNLDLEK 55
V+ T P P+SP PGS RR RP + SLR P++P + P+ R +
Sbjct: 296 VSPTTSPRPASPVPGSERRGSRPEMTPVSLRSTKEGPETPPRPRDQLPPHPRSRRYSGDS 355
Query: 56 SLQFLQQQHSEMLAKLHEEIEHLKRENKDLHYKLIMNQTSQKKDGPSGNHLSRASAPLGA 115
Q + + + +RE +L + + P+ SR G
Sbjct: 356 DSSASSAQSGPLGTRSDDTGTGPRRERPS--RRLTTGTPASPRRPPALRSQSRDRLDRGR 413
Query: 116 RWVCINGVWVEPGGPSPARLKEGSSRTH---------RPGG----KRGRLAGGSADTVRS 162
G + PSPAR SR R G RGR +GGS +
Sbjct: 414 PRGAPGGRGAQLSVPSPARRARSQSREEQAVLLVRRDRDGQHSWVPRGRGSGGSGRSTPQ 473
Query: 163 PADSLSMSSFQSVKSISNSGKARPQPGSFNKQDSKADVSQKAD----LEEEPLLHNSKLD 218
+ S ++ + + S S + P S + + D Q+ LEEE L + L+
Sbjct: 474 TPRARSPAAPRLSRVSSPSPELGTTPASIFRTPLQLDPQQEQQLFRRLEEEFLANARALE 533
Query: 219 KVPGV 223
V V
Sbjct: 534 AVASV 538
>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 34.7 bits (78), Expect = 0.15
Identities = 59/245 (24%), Positives = 89/245 (36%), Gaps = 29/245 (11%)
Query: 6 VAAGTRP-PSSPTPGSRRRRQRPSVGVQSLR-----PQSPQLRQSD----PQKRNLDLEK 55
V+ T P P+SP PGS RR RP + SLR P++P + P+ R +
Sbjct: 296 VSPTTSPRPASPVPGSERRGSRPEMTPVSLRSTKEGPETPPRPRDQLPPHPRSRRYSGDS 355
Query: 56 SLQFLQQQHSEMLAKLHEEIEHLKRENKDLHYKLIMNQTSQKKDGPSGNHLSRASAPLGA 115
Q + + + +RE +L + + P+ SR G
Sbjct: 356 DSSASSAQSGPLGTRSDDTGTGPRRERPS--RRLTTGTPASPRRPPALRSQSRDRLDRGR 413
Query: 116 RWVCINGVWVEPGGPSPARLKEGSSRTH---------RPGG----KRGRLAGGSADTVRS 162
G + PSPAR SR R G RGR +GGS +
Sbjct: 414 PRGAPGGRGAQLSVPSPARRARSQSREEQAVLLVRRDRDGQHSWVPRGRGSGGSGRSTPQ 473
Query: 163 PADSLSMSSFQSVKSISNSGKARPQPGSFNKQDSKADVSQKAD----LEEEPLLHNSKLD 218
+ S ++ + + S S + P S + + D Q+ LEEE L + L+
Sbjct: 474 TPRARSPAAPRLSRVSSPSPELGTTPASIFRTPLQLDPQQEQQLFRRLEEEFLANARALE 533
Query: 219 KVPGV 223
V V
Sbjct: 534 AVASV 538
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,236,933
Number of Sequences: 37866
Number of extensions: 910823
Number of successful extensions: 4538
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 4358
Number of HSP's gapped (non-prelim): 354
length of query: 378
length of database: 18,247,518
effective HSP length: 104
effective length of query: 274
effective length of database: 14,309,454
effective search space: 3920790396
effective search space used: 3920790396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.