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Search of human proteins with 20143480
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20143480 phosphatidate cytidylyltransferase 2 [Homo sapiens]
(445 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20143480 phosphatidate cytidylyltransferase 2 [Homo sapiens] 919 0.0
gi|22035624 CDP-diacylglycerol synthase 1 [Homo sapiens] 677 0.0
gi|157738694 G protein-coupled receptor 109B [Homo sapiens] 38 0.016
gi|29171311 G protein-coupled receptor 109A [Homo sapiens] 38 0.016
gi|12232379 elongation of very long chain fatty acids-like 4 [Ho... 36 0.062
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 32 0.89
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 32 1.5
gi|154800443 solute carrier family 17 (sodium phosphate), member... 31 2.0
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap... 30 3.4
gi|239748878 PREDICTED: similar to serine/threonine-protein kina... 30 4.4
gi|239742911 PREDICTED: similar to serine/threonine-protein kina... 30 4.4
gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sap... 30 5.8
gi|224994189 prominin 1 isoform 2 [Homo sapiens] 29 7.5
gi|222831612 solute carrier family 44, member 2 isoform 1 [Homo ... 29 7.5
gi|222831610 solute carrier family 44, member 2 isoform 2 [Homo ... 29 7.5
gi|224994199 prominin 1 isoform 4 [Homo sapiens] 29 7.5
gi|224994197 prominin 1 isoform 5 [Homo sapiens] 29 7.5
gi|224994195 prominin 1 isoform 6 [Homo sapiens] 29 7.5
gi|224994193 prominin 1 isoform 7 [Homo sapiens] 29 7.5
gi|224994191 prominin 1 isoform 2 [Homo sapiens] 29 7.5
gi|5174387 prominin 1 isoform 1 [Homo sapiens] 29 7.5
gi|209870067 R3H domain and coiled-coil containing 1 [Homo sapiens] 29 7.5
gi|49457851 zinc finger, DHHC-type containing 20 [Homo sapiens] 29 7.5
>gi|20143480 phosphatidate cytidylyltransferase 2 [Homo sapiens]
Length = 445
Score = 919 bits (2376), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MTELRQRVAHEPVAPPEDKESESEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALS 60
MTELRQRVAHEPVAPPEDKESESEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALS
Sbjct: 1 MTELRQRVAHEPVAPPEDKESESEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALS 60
Query: 61 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSY 120
NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSY
Sbjct: 61 NLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSY 120
Query: 121 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCM 180
DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCM
Sbjct: 121 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCM 180
Query: 181 FVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGMIWFIVPISCVICNDIMAY 240
FVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGMIWFIVPISCVICNDIMAY
Sbjct: 181 FVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGMIWFIVPISCVICNDIMAY 240
Query: 241 MFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMSGYRCFVCPVEYNNDTNSF 300
MFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMSGYRCFVCPVEYNNDTNSF
Sbjct: 241 MFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMSGYRCFVCPVEYNNDTNSF 300
Query: 301 TVDCEPSDLFRLQEYNIPGVIQSVIGWKTVRMYPFQIHSIALSTFASLIGPFGGFFASGF 360
TVDCEPSDLFRLQEYNIPGVIQSVIGWKTVRMYPFQIHSIALSTFASLIGPFGGFFASGF
Sbjct: 301 TVDCEPSDLFRLQEYNIPGVIQSVIGWKTVRMYPFQIHSIALSTFASLIGPFGGFFASGF 360
Query: 361 KRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQ 420
KRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQ
Sbjct: 361 KRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQ 420
Query: 421 QLHIFNTLRSHLIDKGMLTSTTEDE 445
QLHIFNTLRSHLIDKGMLTSTTEDE
Sbjct: 421 QLHIFNTLRSHLIDKGMLTSTTEDE 445
>gi|22035624 CDP-diacylglycerol synthase 1 [Homo sapiens]
Length = 461
Score = 677 bits (1746), Expect = 0.0
Identities = 326/458 (71%), Positives = 380/458 (82%), Gaps = 17/458 (3%)
Query: 1 MTELRQRVA----HEPVAPPEDK------ESESEAKVDGETASDS-----ESRAES--AP 43
M ELR R + E V+PP + + E+E+ D ET D +SR +S
Sbjct: 1 MLELRHRGSCPGPREAVSPPHREGEAAGGDHETESTSDKETDIDDRYGDLDSRTDSDIPE 60
Query: 44 LPVSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQI 103
+P S+D TPE+L +ALS LSSRWKNWW+RGILTL MI+ FF+IIY+G +LM++V+ +Q+
Sbjct: 61 IPPSSDRTPEILKKALSGLSSRWKNWWIRGILTLTMISLFFLIIYMGSFMLMLLVLGIQV 120
Query: 104 KCFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILS 163
KCFHEIITIGY VYHSYDLPWFRTLSWYFLLCVNYFFYGETV DYF T VQREE L+ L
Sbjct: 121 KCFHEIITIGYRVYHSYDLPWFRTLSWYFLLCVNYFFYGETVADYFATFVQREEQLQFLI 180
Query: 164 KYHRFISFTLYLIGFCMFVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLVIHNLFEGMI 223
+YHRFISF LYL GFCMFVLSLVKKHYRLQFYMF WTHVTLLI VTQSHLVI NLFEGMI
Sbjct: 181 RYHRFISFALYLAGFCMFVLSLVKKHYRLQFYMFAWTHVTLLITVTQSHLVIQNLFEGMI 240
Query: 224 WFIVPISCVICNDIMAYMFGFFFGRTPLIKLSPKKTWEGFIGGFFATVVFGLLLSYVMSG 283
WF+VPIS VICNDI AY+FGFFFGRTPLIKLSPKKTWEGFIGGFF+TVVFG + +YV+S
Sbjct: 241 WFLVPISSVICNDITAYLFGFFFGRTPLIKLSPKKTWEGFIGGFFSTVVFGFIAAYVLSK 300
Query: 284 YRCFVCPVEYNNDTNSFTVDCEPSDLFRLQEYNIPGVIQSVIGWKTVRMYPFQIHSIALS 343
Y+ FVCPVEY +D NSF +CEPS+LF+LQ Y++P +++V+ + V +YPFQIHSIALS
Sbjct: 301 YQYFVCPVEYRSDVNSFVTECEPSELFQLQTYSLPPFLKAVLRQERVSLYPFQIHSIALS 360
Query: 344 TFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASFIRG 403
TFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFV+VYI SFIRG
Sbjct: 361 TFASLIGPFGGFFASGFKRAFKIKDFANTIPGHGGIMDRFDCQYLMATFVHVYITSFIRG 420
Query: 404 PNPSKLIQQFLTLRPDQQLHIFNTLRSHLIDKGMLTST 441
PNPSK++QQ L L+P+QQL+I+ TL++HLI+KG+L T
Sbjct: 421 PNPSKVLQQLLVLQPEQQLNIYKTLKTHLIEKGILQPT 458
>gi|157738694 G protein-coupled receptor 109B [Homo sapiens]
Length = 387
Score = 38.1 bits (87), Expect = 0.016
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 72 RGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLSWY 131
R I + ++A F+I +L +V+ I + + H T VY S DL +F TLS+
Sbjct: 228 RAITFIMVVAIVFVICFLPSVVVRIHIFWL----LHTSGTQNCEVYRSVDLAFFITLSFT 283
Query: 132 FLLC----VNYFFYGETVTDYFFTLVQR 155
++ V Y+F + ++F TL+ R
Sbjct: 284 YMNSMLDPVVYYFSSPSFPNFFSTLINR 311
>gi|29171311 G protein-coupled receptor 109A [Homo sapiens]
Length = 363
Score = 38.1 bits (87), Expect = 0.016
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 72 RGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSYDLPWFRTLSWY 131
R I + ++A F+I +L +V+ I + + H T VY S DL +F TLS+
Sbjct: 228 RAITFIMVVAIVFVICFLPSVVVRIRIFWL----LHTSGTQNCEVYRSVDLAFFITLSFT 283
Query: 132 FLLC----VNYFFYGETVTDYFFTLVQR 155
++ V Y+F + ++F TL+ R
Sbjct: 284 YMNSMLDPVVYYFSSPSFPNFFSTLINR 311
>gi|12232379 elongation of very long chain fatty acids-like 4 [Homo
sapiens]
Length = 314
Score = 36.2 bits (82), Expect = 0.062
Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 42/177 (23%)
Query: 34 DSESRAESAPLPVSADDTPEVLNRALSNLSSRWKNW------WVRGILTLAMIAFFFIII 87
DSE + + + +DT E S R +NW W TL++ + + +
Sbjct: 5 DSEPGSVLNVVSTALNDTVEFYRWTWSIADKRVENWPLMQSPWP----TLSISTLYLLFV 60
Query: 88 YLGP----------MVLMIIV-----MCVQIKCFHEIITIGYNVYHSY------------ 120
+LGP M L++I+ + + + F E+ YN +SY
Sbjct: 61 WLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVH 120
Query: 121 DLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIG 177
++ L WYF+ Y +TV FF L ++ + L YH FTL+ IG
Sbjct: 121 EVRIAAALWWYFVS--KGVEYLDTV---FFILRKKNNQVSFLHVYHHCTMFTLWWIG 172
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 32.3 bits (72), Expect = 0.89
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 18 DKESESEAKVDGETASDSESRAESAPLP-VSADDTPEVLNRALSNLSSRWKNWWVRGILT 76
++E + EA+ + ++ E+RAES PLP VSA PEV RA + S W G ++
Sbjct: 7221 EEEEQEEARAESQSEEQQEARAES-PLPQVSARPVPEV-GRAPTRSSPEPTPWEDIGQVS 7278
Query: 77 LAMI 80
L I
Sbjct: 7279 LVQI 7282
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 31.6 bits (70), Expect = 1.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 11 EPVAPPEDKESESEAKVDGETASDSESRAESA 42
EPVA +ESE+ D +++SDSES + S+
Sbjct: 459 EPVASAHSSSAESESTSDSDSSSDSESESSSS 490
>gi|154800443 solute carrier family 17 (sodium phosphate), member 1
[Homo sapiens]
Length = 467
Score = 31.2 bits (69), Expect = 2.0
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 195 YMFGWTH--VTLLIVVTQSHLVIHNLFE-GMIWFIVPISCVICNDIMAYMFGFFFGRTPL 251
+ F W+H +TL + + ++ N+ E G + + + IC ++ + FF R L
Sbjct: 272 FTFFWSHNIMTLYTPMFINSMLHVNIKENGFLSSLPYLFAWICGNLAGQLSDFFLTRNIL 331
Query: 252 IKLSPKKTWEGFIGGFFATVVFGLLLSYVMSGYRCFVCPVEYNNDTNSF 300
++ +K + GF +FG+ L Y+ S + V + T SF
Sbjct: 332 SVIAVRKLFTA--AGFLLPAIFGVCLPYLSSTFYSIVIFLILAGATGSF 378
>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
sapiens]
Length = 528
Score = 30.4 bits (67), Expect = 3.4
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 1 MTELRQRVAHEPVAPPEDKESESEAKVDGETASDSESRAESAPLPVS 47
+TE ++ P +P E++E E E + + + E +E AP P+S
Sbjct: 297 LTEPKEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEEAPPPLS 343
>gi|239748878 PREDICTED: similar to serine/threonine-protein kinase,
putative [Homo sapiens]
Length = 230
Score = 30.0 bits (66), Expect = 4.4
Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 82 FFFIIIYLGPMVLMIIVMCVQIK---CFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNY 138
+ +I +Y+ +LM +CV C H + I + Y + + + Y +CV
Sbjct: 26 YVYIYMYIYTYILMYTYICVYTHTYLCIHTYVYIHMHTYVYIHMCIYTCICMYTYICV-- 83
Query: 139 FFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCMFVLSLVKKHYRLQFYMFG 198
Y V + I + +I +Y C+++ + V H + YM+
Sbjct: 84 ---------YTHAYVCIHTHVYIHMHMYVYICMCIYTY-ICVYIHTYVCIHTYIYTYMYV 133
Query: 199 WTHVTLLIVVTQ-SHLVIH-NLFEGMIWFIVPISCV---ICNDIMAYMFGF 244
+ +V + I V +++ ++ ++ M ++ +CV C + YM+ +
Sbjct: 134 YIYVCIHIYVCMYAYIYVYIHICVYMYTYVYTHTCVCMYTCMYVYIYMYTY 184
>gi|239742911 PREDICTED: similar to serine/threonine-protein kinase,
putative [Homo sapiens]
Length = 230
Score = 30.0 bits (66), Expect = 4.4
Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 82 FFFIIIYLGPMVLMIIVMCVQIK---CFHEIITIGYNVYHSYDLPWFRTLSWYFLLCVNY 138
+ +I +Y+ +LM +CV C H + I + Y + + + Y +CV
Sbjct: 26 YVYIYMYIYTYILMYTYICVYTHTYLCIHTYVYIHMHTYVYIHMCIYTCICMYTYICV-- 83
Query: 139 FFYGETVTDYFFTLVQREEPLRILSKYHRFISFTLYLIGFCMFVLSLVKKHYRLQFYMFG 198
Y V + I + +I +Y C+++ + V H + YM+
Sbjct: 84 ---------YTHAYVCIHTHVYIHMHMYVYICMCIYTY-ICVYIHTYVCIHTYIYTYMYV 133
Query: 199 WTHVTLLIVVTQ-SHLVIH-NLFEGMIWFIVPISCV---ICNDIMAYMFGF 244
+ +V + I V +++ ++ ++ M ++ +CV C + YM+ +
Sbjct: 134 YIYVCIHIYVCMYAYIYVYIHICVYMYTYVYTHTCVCMYTCMYVYIYMYTY 184
>gi|7662058 tectonin beta-propeller repeat containing 2 [Homo
sapiens]
Length = 1411
Score = 29.6 bits (65), Expect = 5.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 13 VAPPEDKESESEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALSNLSS 64
V P + K + + K +G + S S ES P D+P+ LN L +++S
Sbjct: 458 VKPIKVKRKKKKKKTEGGSRSTCHSSLESTPCSEFPGDSPQSLNTDLLSMTS 509
>gi|224994189 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 46 VSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLG 90
V ++T ++R L L WW+ G++ +++ I YLG
Sbjct: 402 VYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLG 446
>gi|222831612 solute carrier family 44, member 2 isoform 1 [Homo
sapiens]
Length = 706
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 69 WWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSY 120
W + G++ ++ FII+ +M+ VM + + I+ +GY ++H Y
Sbjct: 234 WIIIGLVIAMAMSLLFIILLRFLAGIMVWVMIIMV-----ILVLGYGIFHCY 280
>gi|222831610 solute carrier family 44, member 2 isoform 2 [Homo
sapiens]
Length = 704
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 69 WWVRGILTLAMIAFFFIIIYLGPMVLMIIVMCVQIKCFHEIITIGYNVYHSY 120
W + G++ ++ FII+ +M+ VM + + I+ +GY ++H Y
Sbjct: 232 WIIIGLVIAMAMSLLFIILLRFLAGIMVWVMIIMV-----ILVLGYGIFHCY 278
>gi|224994199 prominin 1 isoform 4 [Homo sapiens]
Length = 825
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 46 VSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLG 90
V ++T ++R L L WW+ G++ +++ I YLG
Sbjct: 402 VYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLG 446
>gi|224994197 prominin 1 isoform 5 [Homo sapiens]
Length = 833
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 46 VSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLG 90
V ++T ++R L L WW+ G++ +++ I YLG
Sbjct: 402 VYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLG 446
>gi|224994195 prominin 1 isoform 6 [Homo sapiens]
Length = 834
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 46 VSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLG 90
V ++T ++R L L WW+ G++ +++ I YLG
Sbjct: 411 VYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLG 455
>gi|224994193 prominin 1 isoform 7 [Homo sapiens]
Length = 842
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 46 VSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLG 90
V ++T ++R L L WW+ G++ +++ I YLG
Sbjct: 411 VYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLG 455
>gi|224994191 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 46 VSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLG 90
V ++T ++R L L WW+ G++ +++ I YLG
Sbjct: 402 VYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLG 446
>gi|5174387 prominin 1 isoform 1 [Homo sapiens]
Length = 865
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 46 VSADDTPEVLNRALSNLSSRWKNWWVRGILTLAMIAFFFIIIYLG 90
V ++T ++R L L WW+ G++ +++ I YLG
Sbjct: 411 VYVNNTESYIHRNLPTLEEYDSYWWLGGLVICSLLTLIVIFYYLG 455
>gi|209870067 R3H domain and coiled-coil containing 1 [Homo sapiens]
Length = 253
Score = 29.3 bits (64), Expect = 7.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 19 KESESEAKVDGETASDSESRAESAPLPVSADDTPEVLNRALSNLSSR 65
KES E ++ E D E E P S DD E+L NL+ +
Sbjct: 59 KESLLEKRLVAEEEEDEEEVEEDGPSSCSEDDYSELLQEITDNLTKK 105
>gi|49457851 zinc finger, DHHC-type containing 20 [Homo sapiens]
Length = 354
Score = 29.3 bits (64), Expect = 7.5
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 163 SKYHRFISFTLYLIGFCMFVLSLVKKHYRLQFYMFGWT----------HVTLLIVVTQSH 212
S Y F+ F LY + +C+FV + V L++++ WT HV L V+
Sbjct: 166 SNYKFFLLFLLYSLLYCLFVAATV-----LEYFIKFWTNELTDTRAKFHVLFLFFVSAMF 220
Query: 213 LV-IHNLFEGMIWFI 226
+ + +LF W +
Sbjct: 221 FISVLSLFSYHCWLV 235
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.143 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,371,581
Number of Sequences: 37866
Number of extensions: 699422
Number of successful extensions: 2999
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2979
Number of HSP's gapped (non-prelim): 29
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.