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Search of human proteins with 19923985
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
(227 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 462 e-130
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 384 e-107
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 371 e-103
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 337 4e-93
gi|16933567 mel transforming oncogene [Homo sapiens] 207 8e-54
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 202 2e-52
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 194 5e-50
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 193 9e-50
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 189 1e-48
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 186 1e-47
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 186 1e-47
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 186 1e-47
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 184 7e-47
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 182 2e-46
gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens] 181 6e-46
gi|34485711 Ras-related protein Rab-27A [Homo sapiens] 178 4e-45
gi|34485709 Ras-related protein Rab-27A [Homo sapiens] 178 4e-45
gi|34485706 Ras-related protein Rab-27A [Homo sapiens] 178 4e-45
gi|19923264 Ras-related protein Rab-27A [Homo sapiens] 178 4e-45
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 175 2e-44
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 159 2e-39
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 158 3e-39
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 155 3e-38
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 152 3e-37
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 151 4e-37
gi|50234889 RAB43 protein [Homo sapiens] 150 7e-37
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 149 1e-36
gi|19923483 GTPase Rab14 [Homo sapiens] 149 1e-36
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 149 2e-36
gi|116812567 RAB25 [Homo sapiens] 148 3e-36
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 462 bits (1189), Expect = e-130
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MRHEAPMQMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV 60
MRHEAPMQMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV
Sbjct: 1 MRHEAPMQMASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV 60
Query: 61 STVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 120
STVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA
Sbjct: 61 STVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 120
Query: 121 VQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINV 180
VQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINV
Sbjct: 121 VQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINV 180
Query: 181 KQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC 227
KQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC
Sbjct: 181 KQTFERLVDIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC 227
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 384 bits (987), Expect = e-107
Identities = 185/220 (84%), Positives = 204/220 (92%), Gaps = 1/220 (0%)
Query: 9 MASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK 68
MASA D+RYGQK+SSDQNFDYMFK+LIIGNSSVGKTSFLFRYADDSFT AFVSTVGIDFK
Sbjct: 1 MASATDSRYGQKESSDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
Query: 69 VKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 128
VKT+++N+KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI
Sbjct: 61 VKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 120
Query: 129 KTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLV 188
KTYSWDNAQV+LVGNKCDMEDERV+S+ERG+ L + LGFEFFE SAKDNINVKQTFERLV
Sbjct: 121 KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 180
Query: 189 DIICDKMSESLET-DPAITAAKQNTRLKETPPPPQPNCAC 227
D+IC+KMSESL+T DPA+T AKQ +L + PP +CAC
Sbjct: 181 DVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC 220
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 371 bits (953), Expect = e-103
Identities = 177/219 (80%), Positives = 200/219 (91%)
Query: 9 MASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK 68
MAS D + G KD+SDQNFDYMFKLLIIGNSSVGKTSFLFRYADD+FT AFVSTVGIDFK
Sbjct: 1 MASVTDGKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFK 60
Query: 69 VKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 128
VKTV+++EKR+KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW+TQI
Sbjct: 61 VKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI 120
Query: 129 KTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLV 188
KTYSWDNAQVILVGNKCDME+ERV+ TE+GQ L EQLGF+FFE SAK+NI+V+Q FERLV
Sbjct: 121 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 180
Query: 189 DIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC 227
D ICDKMS+SL+TDP++ + +NTRL +TPP Q NC+C
Sbjct: 181 DAICDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQNCSC 219
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 337 bits (865), Expect = 4e-93
Identities = 161/219 (73%), Positives = 188/219 (85%)
Query: 9 MASAQDARYGQKDSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK 68
MASA D + G +D++DQNFDYMFKLL+IGNSSVGKTSFLFRYADDSFT AFVSTVGIDFK
Sbjct: 1 MASAGDTQAGPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60
Query: 69 VKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 128
VKTV++++KRIKLQIWDTAGQERYRTITTAYYRGAMGF+LMYDI N+ESF AVQDW+TQI
Sbjct: 61 VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120
Query: 129 KTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLV 188
KTYSWDNAQVILVGNKCD+EDERV+ E G+ L + LGFEFFE SAK+NINVKQ FERLV
Sbjct: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
Query: 189 DIICDKMSESLETDPAITAAKQNTRLKETPPPPQPNCAC 227
D+IC+KM+ESLE + + + + + P P +C+C
Sbjct: 181 DVICEKMNESLEPSSSSGSNGKGPAVGDAPAPQPSSCSC 219
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 207 bits (526), Expect = 8e-54
Identities = 97/176 (55%), Positives = 135/176 (76%)
Query: 25 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIW 84
+ +DY+FKLL+IG+S VGKT LFR+++D+F S F+ST+GIDFK++T+ + KRIKLQIW
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62
Query: 85 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 144
DTAGQER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ ++ + + +++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122
Query: 145 CDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLE 200
CD+ D+R +S ERG+ L G +F ETSAK NINV+ F L I KM + LE
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLE 178
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 202 bits (513), Expect = 2e-52
Identities = 91/175 (52%), Positives = 134/175 (76%)
Query: 25 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIW 84
+ +DY+FKLL+IG+S VGKT LFR+++D+F + F+ST+GIDFK++T+ + K+IKLQIW
Sbjct: 3 KTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIW 62
Query: 85 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 144
DTAGQER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ ++ + + +++GNK
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122
Query: 145 CDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199
CDM D+R +S ERG+ L G +F ETSAK + NV++ F L I K++ +
Sbjct: 123 CDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKM 177
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 194 bits (493), Expect = 5e-50
Identities = 90/170 (52%), Positives = 126/170 (74%)
Query: 25 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIW 84
+ +D +FKLL+IG+S VGKT LFR++DD+F + F+ST+GIDFK+KTV K+IKLQIW
Sbjct: 4 KTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIW 63
Query: 85 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 144
DTAGQER+ TITT+YYRGAMG +L+YDITN +SF + W I ++ ++ + +L+GNK
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNK 123
Query: 145 CDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDK 194
CDM+D+RV+ +G + + G FFETSAK NIN+++ F L + I K
Sbjct: 124 CDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK 173
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 193 bits (491), Expect = 9e-50
Identities = 91/197 (46%), Positives = 136/197 (69%), Gaps = 3/197 (1%)
Query: 22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKL 81
S + +DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ + K IKL
Sbjct: 3 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 62
Query: 82 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV 141
QIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W +I Y+ +N +LV
Sbjct: 63 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLV 122
Query: 142 GNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLET 201
GNKCD+ ++V+ + + LG F ETSAK+ NV+Q+F + I +M
Sbjct: 123 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGA-- 180
Query: 202 DPAITAAKQNTRLKETP 218
A A K N +++ TP
Sbjct: 181 -TAGGAEKSNVKIQSTP 196
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 189 bits (481), Expect = 1e-48
Identities = 86/161 (53%), Positives = 121/161 (75%)
Query: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
+D++FKLL+IG+S VGKT + R+A+D+F + ++ST+GIDFK++TV K+IKLQ+WDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 64
Query: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 146
AGQER++TITTAYYRGAMG IL+YDIT+E+SF +Q+W IK + + +L+GNKCD
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 147 MEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERL 187
ME +R + E+ L + G FFETSAK ++NV + F L
Sbjct: 125 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 165
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 186 bits (473), Expect = 1e-47
Identities = 85/161 (52%), Positives = 119/161 (73%)
Query: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
+D++FKLL+IG+S VGKT + R+A+D+F + ++ST+GIDFK++TV K+IKLQ+WDT
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 188
Query: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 146
AGQER++TITTAYYRGAMG IL YDIT+E+SF +Q+W I + + +L+GNKCD
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCD 248
Query: 147 MEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERL 187
ME +R + E+ L + G FFETSAK ++NV + F L
Sbjct: 249 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 289
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 186 bits (473), Expect = 1e-47
Identities = 85/161 (52%), Positives = 119/161 (73%)
Query: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
+D++FKLL+IG+S VGKT + R+A+D+F + ++ST+GIDFK++TV K+IKLQ+WDT
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 188
Query: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 146
AGQER++TITTAYYRGAMG IL YDIT+E+SF +Q+W I + + +L+GNKCD
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCD 248
Query: 147 MEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERL 187
ME +R + E+ L + G FFETSAK ++NV + F L
Sbjct: 249 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 289
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 186 bits (473), Expect = 1e-47
Identities = 85/161 (52%), Positives = 119/161 (73%)
Query: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
+D++FKLL+IG+S VGKT + R+A+D+F + ++ST+GIDFK++TV K+IKLQ+WDT
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 188
Query: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 146
AGQER++TITTAYYRGAMG IL YDIT+E+SF +Q+W I + + +L+GNKCD
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCD 248
Query: 147 MEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERL 187
ME +R + E+ L + G FFETSAK ++NV + F L
Sbjct: 249 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSL 289
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 184 bits (466), Expect = 7e-47
Identities = 87/201 (43%), Positives = 131/201 (65%), Gaps = 4/201 (1%)
Query: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDT 86
+DY+FKLL+IG+S VGK+ L R+ADD++T +++ST+G+DFK++T+ + K IKLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 87 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 146
AGQER+RTIT++YYRGA G I++YD+T++ES+ V+ W +I Y+ +N +LVGNK D
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 124
Query: 147 MEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAIT 206
+ ++V+ + + LG F ETSAK+ NV+Q F + I +M A
Sbjct: 125 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPG----AASG 180
Query: 207 AAKQNTRLKETPPPPQPNCAC 227
+ N ++ TP P C
Sbjct: 181 GERPNLKIDSTPVKPAGGGCC 201
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 182 bits (462), Expect = 2e-46
Identities = 92/204 (45%), Positives = 134/204 (65%), Gaps = 4/204 (1%)
Query: 28 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTA 87
D+ +++IIG+ VGKTS + R+ DD+F A STVG+DFK+KTV K+I+LQIWDTA
Sbjct: 40 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
Query: 88 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM 147
GQER+ +IT+AYYR A G IL+YDIT +E+F+ + W I Y+ ++A+++LVGNK D
Sbjct: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
Query: 148 EDERVISTERGQHLGEQL-GFEFFETSAKDNINVKQTFERLVDIICDKMSESL---ETDP 203
E +R I+ ++G+ +Q+ G F E SAKDN NV + F +LVD I KM + E
Sbjct: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
Query: 204 AITAAKQNTRLKETPPPPQPNCAC 227
+I + + + PPP+P+ C
Sbjct: 220 SILSLQPEPEIPPELPPPRPHVRC 243
>gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 181 bits (458), Expect = 6e-46
Identities = 86/217 (39%), Positives = 143/217 (65%), Gaps = 12/217 (5%)
Query: 23 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEK----- 77
+D ++DY+ KLL +G+S VGKT+FL+RY D+ F F++TVGIDF+ K V N +
Sbjct: 2 TDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGS 61
Query: 78 -----RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 132
++ LQ+WDTAGQER+R++TTA++R AMGF+LM+D+T+++SF V++W +Q++ +
Sbjct: 62 SGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 121
Query: 133 W-DNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
+ +N ++L+GNK D+ D+R ++ + + L ++ G +FETSA NV++ E L+D+I
Sbjct: 122 YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 181
Query: 192 CDKMSESLE-TDPAITAAKQNTRLKETPPPPQPNCAC 227
+M + +E T T N+ + PP+ C C
Sbjct: 182 MKRMEQCVEKTQIPDTVNGGNSGNLDGEKPPEKKCIC 218
>gi|34485711 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 178 bits (451), Expect = 4e-45
Identities = 84/189 (44%), Positives = 129/189 (68%), Gaps = 11/189 (5%)
Query: 23 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE------ 76
SD ++DY+ K L +G+S VGKTS L++Y D F S F++TVGIDF+ K V
Sbjct: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
Query: 77 ----KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 132
+RI LQ+WDTAGQER+R++TTA++R AMGF+L++D+TNE+SF V++W +Q++ ++
Sbjct: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
Query: 133 W-DNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
+ +N ++L GNK D+ED+RV+ E L E+ G +FETSA + N+ Q E L+D+I
Sbjct: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
Query: 192 CDKMSESLE 200
+M ++
Sbjct: 182 MKRMERCVD 190
>gi|34485709 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 178 bits (451), Expect = 4e-45
Identities = 84/189 (44%), Positives = 129/189 (68%), Gaps = 11/189 (5%)
Query: 23 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE------ 76
SD ++DY+ K L +G+S VGKTS L++Y D F S F++TVGIDF+ K V
Sbjct: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
Query: 77 ----KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 132
+RI LQ+WDTAGQER+R++TTA++R AMGF+L++D+TNE+SF V++W +Q++ ++
Sbjct: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
Query: 133 W-DNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
+ +N ++L GNK D+ED+RV+ E L E+ G +FETSA + N+ Q E L+D+I
Sbjct: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
Query: 192 CDKMSESLE 200
+M ++
Sbjct: 182 MKRMERCVD 190
>gi|34485706 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 178 bits (451), Expect = 4e-45
Identities = 84/189 (44%), Positives = 129/189 (68%), Gaps = 11/189 (5%)
Query: 23 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE------ 76
SD ++DY+ K L +G+S VGKTS L++Y D F S F++TVGIDF+ K V
Sbjct: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
Query: 77 ----KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 132
+RI LQ+WDTAGQER+R++TTA++R AMGF+L++D+TNE+SF V++W +Q++ ++
Sbjct: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
Query: 133 W-DNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
+ +N ++L GNK D+ED+RV+ E L E+ G +FETSA + N+ Q E L+D+I
Sbjct: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
Query: 192 CDKMSESLE 200
+M ++
Sbjct: 182 MKRMERCVD 190
>gi|19923264 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 178 bits (451), Expect = 4e-45
Identities = 84/189 (44%), Positives = 129/189 (68%), Gaps = 11/189 (5%)
Query: 23 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE------ 76
SD ++DY+ K L +G+S VGKTS L++Y D F S F++TVGIDF+ K V
Sbjct: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
Query: 77 ----KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 132
+RI LQ+WDTAGQER+R++TTA++R AMGF+L++D+TNE+SF V++W +Q++ ++
Sbjct: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
Query: 133 W-DNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
+ +N ++L GNK D+ED+RV+ E L E+ G +FETSA + N+ Q E L+D+I
Sbjct: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
Query: 192 CDKMSESLE 200
+M ++
Sbjct: 182 MKRMERCVD 190
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 175 bits (444), Expect = 2e-44
Identities = 81/175 (46%), Positives = 128/175 (73%), Gaps = 1/175 (0%)
Query: 25 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIW 84
+++D++FKLLIIG+S VGK+S L R+AD++F+ ++++T+G+DFK++TV N +++KLQIW
Sbjct: 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 62
Query: 85 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 144
DTAGQER+RTIT+ YYRG G I++YD+T+ ESF V+ W +I + D+ ILVGNK
Sbjct: 63 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNK 121
Query: 145 CDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESL 199
D + +V+ TE Q+G + FETSAK+N+NV++ F + +++ ++L
Sbjct: 122 NDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNL 176
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 159 bits (402), Expect = 2e-39
Identities = 76/160 (47%), Positives = 112/160 (70%), Gaps = 1/160 (0%)
Query: 26 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFKNEKRIKLQIW 84
++D K++++G++ VGKT FL ++ D +F S F++TVGIDF+ K V + R+KLQIW
Sbjct: 25 SYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIW 84
Query: 85 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 144
DTAGQER+R++T AYYR A +L+YDITN+ SF+ ++ W T+I Y+ + ++L+GNK
Sbjct: 85 DTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNK 144
Query: 145 CDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTF 184
DM ERVI +E G+ L + G F ETSAK +NV+ F
Sbjct: 145 ADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAF 184
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 158 bits (400), Expect = 3e-39
Identities = 80/198 (40%), Positives = 123/198 (62%), Gaps = 13/198 (6%)
Query: 23 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQ 82
S +++D++FK+++IGN+ VGKT + R+ F +T+G+DF +KTV N +++KLQ
Sbjct: 2 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ 61
Query: 83 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVG 142
IWDTAGQER+R+IT +YYR A IL YDIT EESF + +W +I+ Y+ + +LVG
Sbjct: 62 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 121
Query: 143 NKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETD 202
NK D+ + R +S +R + E + ETSAK++ NV++ F +D+ C +SE
Sbjct: 122 NKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF---LDLACRLISE----- 173
Query: 203 PAITAAKQNTRLKETPPP 220
A+QNT + P
Sbjct: 174 -----ARQNTLVNNVSSP 186
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 155 bits (392), Expect = 3e-38
Identities = 73/159 (45%), Positives = 109/159 (68%), Gaps = 1/159 (0%)
Query: 27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFKNEKRIKLQIWD 85
+D FK++++G+S VGKT L R+ D +F + F+STVGIDF+ K + + ++KLQ+WD
Sbjct: 60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 119
Query: 86 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 145
TAGQER+R++T AYYR A +L+YD+TN+ SF+ +Q W T+I Y+ + ++L+GNK
Sbjct: 120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 179
Query: 146 DMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTF 184
D ERV+ E G+ L ++ G F ETSAK +NV F
Sbjct: 180 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 218
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 152 bits (383), Expect = 3e-37
Identities = 73/198 (36%), Positives = 119/198 (60%)
Query: 24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQI 83
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ + K IK QI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 84 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 143
WDTAGQERYR IT+AYYRGA+G +L+YDI ++ V+ W +++ ++ N ++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 144 KCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDP 203
K D+ R + T+ + E+ F ETSA D+ NV++ F+ ++ I +S+ D
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
Query: 204 AITAAKQNTRLKETPPPP 221
A + + PP
Sbjct: 185 AAHDESPGNNVVDISVPP 202
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 151 bits (382), Expect = 4e-37
Identities = 71/179 (39%), Positives = 115/179 (64%)
Query: 24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQI 83
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ + K IK QI
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
Query: 84 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 143
WDTAGQERYR IT+AYYRGA+G +L+YDI ++ V+ W +++ ++ N ++LVGN
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
Query: 144 KCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETD 202
K D+ R + T+ + E+ G F ETSA D+ NV+ F+ ++ I +S+ +D
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSD 183
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 150 bits (380), Expect = 7e-37
Identities = 75/165 (45%), Positives = 108/165 (65%), Gaps = 1/165 (0%)
Query: 24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQI 83
D+ +D++FKL+++G++SVGKT + R+ +F+ ST+G+DF +KT+ KR+KLQI
Sbjct: 12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 71
Query: 84 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 143
WDTAGQER+RTIT +YYR A G IL YDIT SF +V W ++ Y+ N +L+GN
Sbjct: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 131
Query: 144 KCDMEDERVISTERGQHLGEQLGFE-FFETSAKDNINVKQTFERL 187
K D+ + R +S Q L E ETSAKD+ NV++ F R+
Sbjct: 132 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 176
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 149 bits (377), Expect = 1e-36
Identities = 73/209 (34%), Positives = 127/209 (60%), Gaps = 3/209 (1%)
Query: 22 SSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKL 81
++D+NFDY+FK+++IG+S+VGKT + + +T +T+G+DF V+++ + K++K+
Sbjct: 9 AADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKM 68
Query: 82 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILV 141
Q+WDTAGQER+RTIT +YYR A I+ YD+T +F ++ W +I+ Y N ++L+
Sbjct: 69 QVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLI 128
Query: 142 GNKCDMEDERVISTERGQHLGEQLG-FEFFETSAKDNINVKQTFERLVDIICDKMSESLE 200
GNKCD+ ++R + E L E+ G ETSAK++ N+++ F + + + S L
Sbjct: 129 GNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLY 188
Query: 201 TDPAITAAKQNTR--LKETPPPPQPNCAC 227
+ A+ ++ L P + +C C
Sbjct: 189 GESALNGLPLDSSPVLMAQGPSEKTHCTC 217
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 149 bits (377), Expect = 1e-36
Identities = 75/209 (35%), Positives = 119/209 (56%), Gaps = 7/209 (3%)
Query: 26 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWD 85
N+ Y+FK +IIG+ VGK+ L ++ + F + T+G++F + + + ++IKLQIWD
Sbjct: 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 66
Query: 86 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 145
TAGQER+R +T +YYRGA G +++YDIT ++N + W T + + N +IL+GNK
Sbjct: 67 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 126
Query: 146 DMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSE-SLETDPA 204
D+E +R ++ E + E+ G F E SAK NV+ F I + + SL+ + A
Sbjct: 127 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAA 186
Query: 205 IT------AAKQNTRLKETPPPPQPNCAC 227
+ +A Q RL P P + C C
Sbjct: 187 ESGVQHKPSAPQGGRLTSEPQPQREGCGC 215
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 149 bits (376), Expect = 2e-36
Identities = 75/162 (46%), Positives = 106/162 (65%), Gaps = 1/162 (0%)
Query: 24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFT-SAFVSTVGIDFKVKTVFKNEKRIKLQ 82
D N + K +++G+S VGKTS L ++ F +F +TVGI F K V + R+KLQ
Sbjct: 16 DFNDHVLHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDGVRVKLQ 75
Query: 83 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVG 142
IWDTAGQER+R++T AYYR A +L+YDITN+ SF+ ++ W T+I Y+ + ++L+G
Sbjct: 76 IWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLG 135
Query: 143 NKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTF 184
NK DM ERVI +E G+ L + G F ETSAK +NV+ F
Sbjct: 136 NKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAF 177
>gi|116812567 RAB25 [Homo sapiens]
Length = 213
Score = 148 bits (374), Expect = 3e-36
Identities = 73/207 (35%), Positives = 121/207 (58%)
Query: 21 DSSDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIK 80
+ ++++++++FK+++IG S VGKT+ L R+ + F+ +T+G++F +TV +K
Sbjct: 3 NGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 62
Query: 81 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL 140
QIWDTAG ERYR IT+AYYRGA+G +L++D+T +++ V+ W ++ ++ V+L
Sbjct: 63 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 122
Query: 141 VGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLE 200
VGNK D+ R + TE + E G F ETSA D+ NV+ FE ++ I K+S+ +
Sbjct: 123 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQ 182
Query: 201 TDPAITAAKQNTRLKETPPPPQPNCAC 227
A + P P AC
Sbjct: 183 NSIRTNAITLGSAQAGQEPGPGEKRAC 209
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,090,047
Number of Sequences: 37866
Number of extensions: 304973
Number of successful extensions: 1559
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 257
length of query: 227
length of database: 18,247,518
effective HSP length: 99
effective length of query: 128
effective length of database: 14,498,784
effective search space: 1855844352
effective search space used: 1855844352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.