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Search of human proteins with 19923206
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923206 glutamine synthetase [Homo sapiens]
(373 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|74271826 glutamine synthetase [Homo sapiens] 793 0.0
gi|74271837 glutamine synthetase [Homo sapiens] 793 0.0
gi|19923206 glutamine synthetase [Homo sapiens] 793 0.0
gi|221307485 lengsin, lens protein with glutamine synthetase dom... 34 0.19
gi|58330892 interferon-induced protein with tetratricopeptide re... 32 0.71
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 4.6
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 4.6
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 4.6
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 4.6
gi|116534937 interferon-induced protein with tetratricopeptide r... 29 7.8
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 29 7.8
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 29 7.8
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 29 7.8
>gi|74271826 glutamine synthetase [Homo sapiens]
Length = 373
Score = 793 bits (2048), Expect = 0.0
Identities = 373/373 (100%), Positives = 373/373 (100%)
Query: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW 60
MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
Sbjct: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW 60
Query: 61 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120
NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
Sbjct: 61 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120
Query: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY 180
MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY 180
Query: 181 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP 240
RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP 240
Query: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
Query: 301 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
Sbjct: 301 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
Query: 361 LNETGDEPFQYKN 373
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
>gi|74271837 glutamine synthetase [Homo sapiens]
Length = 373
Score = 793 bits (2048), Expect = 0.0
Identities = 373/373 (100%), Positives = 373/373 (100%)
Query: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW 60
MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
Sbjct: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW 60
Query: 61 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120
NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
Sbjct: 61 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120
Query: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY 180
MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY 180
Query: 181 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP 240
RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP 240
Query: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
Query: 301 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
Sbjct: 301 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
Query: 361 LNETGDEPFQYKN 373
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
>gi|19923206 glutamine synthetase [Homo sapiens]
Length = 373
Score = 793 bits (2048), Expect = 0.0
Identities = 373/373 (100%), Positives = 373/373 (100%)
Query: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW 60
MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
Sbjct: 1 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW 60
Query: 61 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120
NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
Sbjct: 61 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120
Query: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY 180
MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
Sbjct: 121 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY 180
Query: 181 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP 240
RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
Sbjct: 181 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP 240
Query: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
Sbjct: 241 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL 300
Query: 301 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
Sbjct: 301 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL 360
Query: 361 LNETGDEPFQYKN 373
LNETGDEPFQYKN
Sbjct: 361 LNETGDEPFQYKN 373
>gi|221307485 lengsin, lens protein with glutamine synthetase domain
isoform a [Homo sapiens]
Length = 509
Score = 34.3 bits (77), Expect = 0.19
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 16/190 (8%)
Query: 54 VEELPEWNFDGSSTLQSEGSNSDMYLVPA-AMFRDPFRKDPNKLVLCEVFKYNRRPAETN 112
+E +P + + +++ NSD+ L+P + FR D V+C+ F P T+
Sbjct: 124 LEVIPNPKDNEMNNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTGEPLLTS 183
Query: 113 LRHTCKRIMDMVSNQHPWFGMEQEYTLMGTDGHPFGWP----SNGFPGPQGPYYCGVGAD 168
R+ KR + + Q F + + D FG P S P + D
Sbjct: 184 PRYIAKRQLSHL--QASGFSLLSAFIY---DFCIFGVPEILNSKIISFPALTFLNN--HD 236
Query: 169 RAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRV 228
+ + +++V+ Y + G + ++ P Q E P GIS D+ + R + V
Sbjct: 237 QPFMQELVDGLY----HTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEV 292
Query: 229 CEDFGVIATF 238
+ IA+F
Sbjct: 293 ARKYNYIASF 302
>gi|58330892 interferon-induced protein with tetratricopeptide
repeats 1-like [Homo sapiens]
Length = 474
Score = 32.3 bits (72), Expect = 0.71
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 262 REENGLKYIEEAIEKLSKR---HQYHIRAYDPKGGLDNARRLTGFH-ETSNINDF---SA 314
+E G KYIEEA+ +S + QY + Y KG +D A L ET+ + F
Sbjct: 232 QEAEGEKYIEEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQM 291
Query: 315 GVANRSASIRIPRTVGQEKKG 335
G+ R+ I+I + +G
Sbjct: 292 GLCYRAQMIQIKEATNWQPRG 312
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 29.6 bits (65), Expect = 4.6
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 139 LMGTDGHPFGWPSNGFPGPQGP 160
L G DG P G P GFPGP GP
Sbjct: 687 LPGPDGEP-GIPGIGFPGPPGP 707
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 29.6 bits (65), Expect = 4.6
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 139 LMGTDGHPFGWPSNGFPGPQGP 160
L G DG P G P GFPGP GP
Sbjct: 687 LPGPDGEP-GIPGIGFPGPPGP 707
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 29.6 bits (65), Expect = 4.6
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 139 LMGTDGHPFGWPSNGFPGPQGP 160
L G DG P G P GFPGP GP
Sbjct: 687 LPGPDGEP-GIPGIGFPGPPGP 707
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 29.6 bits (65), Expect = 4.6
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 139 LMGTDGHPFGWPSNGFPGPQGP 160
L G DG P G P GFPGP GP
Sbjct: 687 LPGPDGEP-GIPGIGFPGPPGP 707
>gi|116534937 interferon-induced protein with tetratricopeptide
repeats 1 isoform 2 [Homo sapiens]
Length = 478
Score = 28.9 bits (63), Expect = 7.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 262 REENGLKYIEEAIEKLSKR---HQYHIRAYDPKGGLDNARRL 300
+E G KYIEEA+ +S + +Y + Y KG +D A L
Sbjct: 232 QEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALEL 273
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 28.9 bits (63), Expect = 7.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 132 GMEQEYTLMGTDGHPFGWPSNGFPGPQGP 160
G + E G +GHP G P GFPGP+GP
Sbjct: 45 GEKGERGFPGLEGHP-GLP--GFPGPEGP 70
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 28.9 bits (63), Expect = 7.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 132 GMEQEYTLMGTDGHPFGWPSNGFPGPQGP 160
G + E G +GHP G P GFPGP+GP
Sbjct: 45 GEKGERGFPGLEGHP-GLP--GFPGPEGP 70
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 28.9 bits (63), Expect = 7.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 132 GMEQEYTLMGTDGHPFGWPSNGFPGPQGP 160
G + E G +GHP G P GFPGP+GP
Sbjct: 45 GEKGERGFPGLEGHP-GLP--GFPGPEGP 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,107,891
Number of Sequences: 37866
Number of extensions: 784270
Number of successful extensions: 2032
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1930
Number of HSP's gapped (non-prelim): 112
length of query: 373
length of database: 18,247,518
effective HSP length: 104
effective length of query: 269
effective length of database: 14,309,454
effective search space: 3849243126
effective search space used: 3849243126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.