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Search of human proteins with 197313779
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197313779 transmembrane protein 130 isoform a [Homo sapiens]
(435 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197313779 transmembrane protein 130 isoform a [Homo sapiens] 897 0.0
gi|23097274 transmembrane protein 130 isoform b [Homo sapiens] 863 0.0
gi|197313781 transmembrane protein 130 isoform c [Homo sapiens] 598 e-171
gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor ... 50 5e-06
gi|52694752 glycoprotein (transmembrane) nmb isoform a precursor... 46 6e-05
gi|5902084 silver homolog [Homo sapiens] 40 0.003
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 38 0.021
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens] 38 0.021
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 33 0.66
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 30 3.3
gi|116006953 polycystin 1-like 2 isoform c [Homo sapiens] 30 3.3
gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens] 30 3.3
gi|24308414 solute carrier family 10, member 4 [Homo sapiens] 30 5.6
gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens] 30 5.6
gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens] 30 5.6
gi|253970427 immunoglobulin superfamily, member 22 [Homo sapiens] 29 7.3
gi|27894376 cell adhesion molecule with homology to L1CAM precur... 29 7.3
gi|151301013 CD200 cell surface glycoprotein receptor 2 [Homo sa... 29 7.3
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 29 7.3
gi|19923084 polycystin-1L1 [Homo sapiens] 29 9.6
>gi|197313779 transmembrane protein 130 isoform a [Homo sapiens]
Length = 435
Score = 897 bits (2317), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Query: 1 MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS 60
MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS
Sbjct: 1 MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS 60
Query: 61 LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV 120
LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV
Sbjct: 61 LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV 120
Query: 121 ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD 180
ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD
Sbjct: 121 ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD 180
Query: 181 FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE 240
FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE
Sbjct: 181 FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE 240
Query: 241 TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN 300
TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN
Sbjct: 241 TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN 300
Query: 301 LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM 360
LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM
Sbjct: 301 LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM 360
Query: 361 TLRNATQQKDMVEVADFDFSPMSDKNPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENH 420
TLRNATQQKDMVEVADFDFSPMSDKNPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENH
Sbjct: 361 TLRNATQQKDMVEVADFDFSPMSDKNPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENH 420
Query: 421 GLLPPLYKSVKTYTV 435
GLLPPLYKSVKTYTV
Sbjct: 421 GLLPPLYKSVKTYTV 435
>gi|23097274 transmembrane protein 130 isoform b [Homo sapiens]
Length = 423
Score = 863 bits (2231), Expect = 0.0
Identities = 423/435 (97%), Positives = 423/435 (97%), Gaps = 12/435 (2%)
Query: 1 MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS 60
MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS
Sbjct: 1 MAQAVWSRLGRILWLACLLPWAPAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGS 60
Query: 61 LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV 120
LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV
Sbjct: 61 LALPADAHLYRFHWIHTPLVLTGKMEKGLSSTIRVVGHVPGEFPVSVWVTAADCWMCQPV 120
Query: 121 ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD 180
ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD
Sbjct: 121 ARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWD 180
Query: 181 FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE 240
FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE
Sbjct: 181 FGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQE 240
Query: 241 TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN 300
TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN
Sbjct: 241 TLRGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYN 300
Query: 301 LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM 360
LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM
Sbjct: 301 LTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYM 360
Query: 361 TLRNATQQKDMVEVADFDFSPMSDKNPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENH 420
TLRNATQQKDMVE NPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENH
Sbjct: 361 TLRNATQQKDMVE------------NPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENH 408
Query: 421 GLLPPLYKSVKTYTV 435
GLLPPLYKSVKTYTV
Sbjct: 409 GLLPPLYKSVKTYTV 423
>gi|197313781 transmembrane protein 130 isoform c [Homo sapiens]
Length = 321
Score = 598 bits (1541), Expect = e-171
Identities = 293/305 (96%), Positives = 293/305 (96%), Gaps = 12/305 (3%)
Query: 131 EFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQMVTE 190
EFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQMVTE
Sbjct: 29 EFLVGDLVVTQNTSLPWPSSYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQMVTE 88
Query: 191 DSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQETLRGIQVLGP 250
DSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQETLRGIQVLGP
Sbjct: 89 DSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQETLRGIQVLGP 148
Query: 251 TLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYNLTHTFRDPGD 310
TLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYNLTHTFRDPGD
Sbjct: 149 TLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYNLTHTFRDPGD 208
Query: 311 YCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYMTLRNATQQKD 370
YCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYMTLRNATQQKD
Sbjct: 209 YCFSIRAENIISKTHQYHKIQVWPSRIQPAVFAFPCATLITVMLAFIMYMTLRNATQQKD 268
Query: 371 MVEVADFDFSPMSDKNPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENHGLLPPLYKSV 430
MVE NPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENHGLLPPLYKSV
Sbjct: 269 MVE------------NPEPPSGVRCCCQMCCGPFLLETPSEYLEIVRENHGLLPPLYKSV 316
Query: 431 KTYTV 435
KTYTV
Sbjct: 317 KTYTV 321
Score = 63.2 bits (152), Expect = 5e-10
Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 1 MAQAVWSRLGRILWLACLLPWAPAGVAA 28
MAQAVWSRLGRILWLACLLPWAPAGVAA
Sbjct: 1 MAQAVWSRLGRILWLACLLPWAPAGVAA 28
>gi|4505405 glycoprotein (transmembrane) nmb isoform b precursor
[Homo sapiens]
Length = 560
Score = 49.7 bits (117), Expect = 5e-06
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 41/205 (20%)
Query: 150 SYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQM-VTEDSVVYYNYSIIGTFTVKL 208
++L + L+HDPS+FL + Y W FGD T + V+ + V + Y + GTF++ L
Sbjct: 254 TFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNL 313
Query: 209 KVVA------------------------------EWEEVEPDATRAVKQKTGDFSASLKL 238
V A E + PD + + G F A++ +
Sbjct: 314 TVKAAAPGPCPPPPPPPRPSKPTPSLGPAGDNPLELSRI-PDENCQI-NRYGHFQATITI 371
Query: 239 QETLRGIQVLGPT--LIQTFQKMTVTLNFL----GSPPLTVCWRLK-PECLPLEEGECHP 291
E + + ++ T L+ + ++F+ GS P VC + P C + C P
Sbjct: 372 VEGILEVNIIQMTDVLMPVPWPESSLIDFVVTCQGSIPTEVCTIISDPTCEITQNTVCSP 431
Query: 292 VSVASTA-YNLTHTFRDPGDYCFSI 315
V V + TF G YC ++
Sbjct: 432 VDVDEMCLLTVRRTFNGSGTYCVNL 456
>gi|52694752 glycoprotein (transmembrane) nmb isoform a precursor
[Homo sapiens]
Length = 572
Score = 46.2 bits (108), Expect = 6e-05
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 150 SYLTKTVLKVSFLLHDPSNFLKTALFLYSWDFGDGTQM-VTEDSVVYYNYSIIGTFTVKL 208
++L + L+HDPS+FL + Y W FGD T + V+ + V + Y + GTF++ L
Sbjct: 254 TFLKDLPIMFDVLIHDPSHFLNYSTINYKWSFGDNTGLFVSTNHTVNHTYVLNGTFSLNL 313
Query: 209 KVVA 212
V A
Sbjct: 314 TVKA 317
>gi|5902084 silver homolog [Homo sapiens]
Length = 661
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 119 PVARGFVVLPITEFLVGDLVVTQNTSLPWPSS-YLTKTVLKVSFLLHDPSNFLKTALFLY 177
P+A IT+ + + V+Q +L + +L L + LHDPS +L A Y
Sbjct: 199 PLAHSSSAFTITDQVPFSVSVSQLRALDGGNKHFLRNQPLTFALQLHDPSGYLAEADLSY 258
Query: 178 SWDFGDGT-QMVTEDSVVYYNYSIIGTFTVKLKVVA 212
+WDFGD + +++ VV + Y G T ++ + A
Sbjct: 259 TWDFGDSSGTLISRALVVTHTYLEPGPVTAQVVLQA 294
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 37.7 bits (86), Expect = 0.021
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 176 LYSWDFGDGTQMVTEDS-VVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSA 234
LY+WDFGDG+ ++T+ + Y+ GT+ V+L+V A V ++ S
Sbjct: 1158 LYTWDFGDGSPVLTQSQPAANHTYASRGTYHVRLEVNNTVSGAAAQADVRVFEELRGLSV 1217
Query: 235 SLKLQETLRGIQVLGPTLIQTFQKMTVTLNF-----LGSPPLTV 273
+ L +G V+ +QT +T T + L P TV
Sbjct: 1218 DMSL-AVEQGAPVVVSAAVQTGDNITWTFDMGDGTVLSGPEATV 1260
Score = 37.4 bits (85), Expect = 0.027
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 27/144 (18%)
Query: 177 YSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASL 236
Y WD GDG + E V + Y+ G FTV+ VA W EV + ++
Sbjct: 1498 YLWDLGDGGWL--EGPEVTHAYNSTGDFTVR---VAGWNEV----------SRSEAWLNV 1542
Query: 237 KLQETLRGIQV-LGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVA 295
++ +RG+ V T++ ++ + + + W L C P+ G
Sbjct: 1543 TVKRRVRGLVVNASRTVVPLNGSVSFSTSLEAGSDVRYSWVLCDRCTPIPGGP------- 1595
Query: 296 STAYNLTHTFRDPGDYCFSIRAEN 319
+++TFR G + + AEN
Sbjct: 1596 ----TISYTFRSVGTFNIIVTAEN 1615
Score = 30.8 bits (68), Expect = 2.5
Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 24/179 (13%)
Query: 176 LYSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSAS 235
++ W D + ++ V Y F + L A+ V T +++ +
Sbjct: 964 VFRWTINDKQSLTFQNVVFNVIYQSAAVFKLSLT-----------ASNHVSNVTVNYNVT 1012
Query: 236 LKLQETLRGIQVLG-PTLIQTFQKMTVTLNFLGSPPLTVC--WRLKPECLPLEE-----G 287
++ ++G+QV P ++ + +T L + V W L +
Sbjct: 1013 VERMNRMQGLQVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYN 1072
Query: 288 ECHPVSVASTA-----YNLTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAV 341
E PV S A +N+ HT+ PG+Y ++ A N Q + V S AV
Sbjct: 1073 ESFPVPDPSVAQVLVEHNVMHTYAAPGEYLLTVLASNAFENLTQQVPVSVRASLPSVAV 1131
>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
Length = 4303
Score = 37.7 bits (86), Expect = 0.021
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 176 LYSWDFGDGTQMVTEDS-VVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSA 234
LY+WDFGDG+ ++T+ + Y+ GT+ V+L+V A V ++ S
Sbjct: 1158 LYTWDFGDGSPVLTQSQPAANHTYASRGTYHVRLEVNNTVSGAAAQADVRVFEELRGLSV 1217
Query: 235 SLKLQETLRGIQVLGPTLIQTFQKMTVTLNF-----LGSPPLTV 273
+ L +G V+ +QT +T T + L P TV
Sbjct: 1218 DMSL-AVEQGAPVVVSAAVQTGDNITWTFDMGDGTVLSGPEATV 1260
Score = 37.4 bits (85), Expect = 0.027
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 27/144 (18%)
Query: 177 YSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASL 236
Y WD GDG + E V + Y+ G FTV+ VA W EV + ++
Sbjct: 1498 YLWDLGDGGWL--EGPEVTHAYNSTGDFTVR---VAGWNEV----------SRSEAWLNV 1542
Query: 237 KLQETLRGIQV-LGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECHPVSVA 295
++ +RG+ V T++ ++ + + + W L C P+ G
Sbjct: 1543 TVKRRVRGLVVNASRTVVPLNGSVSFSTSLEAGSDVRYSWVLCDRCTPIPGGP------- 1595
Query: 296 STAYNLTHTFRDPGDYCFSIRAEN 319
+++TFR G + + AEN
Sbjct: 1596 ----TISYTFRSVGTFNIIVTAEN 1615
Score = 30.8 bits (68), Expect = 2.5
Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 24/179 (13%)
Query: 176 LYSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSAS 235
++ W D + ++ V Y F + L A+ V T +++ +
Sbjct: 964 VFRWTINDKQSLTFQNVVFNVIYQSAAVFKLSLT-----------ASNHVSNVTVNYNVT 1012
Query: 236 LKLQETLRGIQVLG-PTLIQTFQKMTVTLNFLGSPPLTVC--WRLKPECLPLEE-----G 287
++ ++G+QV P ++ + +T L + V W L +
Sbjct: 1013 VERMNRMQGLQVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYN 1072
Query: 288 ECHPVSVASTA-----YNLTHTFRDPGDYCFSIRAENIISKTHQYHKIQVWPSRIQPAV 341
E PV S A +N+ HT+ PG+Y ++ A N Q + V S AV
Sbjct: 1073 ESFPVPDPSVAQVLVEHNVMHTYAAPGEYLLTVLASNAFENLTQQVPVSVRASLPSVAV 1131
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 32.7 bits (73), Expect = 0.66
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 18/173 (10%)
Query: 108 WVTAADCWMCQPVARGFVVLPITE----FLVGD----LVVTQNTSLP-WPSSYLTKTVLK 158
W +C + + G + IT +L G LV+ +++P W + T T L
Sbjct: 983 WYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTELN 1042
Query: 159 VSFLLHDPSNFLKTALFLYSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKLKVVAE----- 213
V +++ S + + LY F D V + S Y ++II TF + L E
Sbjct: 1043 V--VVYHGSQASRRTIQLYEMYFKDPQGRVIKGS--YKFHAIITTFEMILTDCPELRNIP 1098
Query: 214 WEEVEPDATRAVKQKTGDFSASLKLQETLRGIQVLGPTLIQTFQKMTVTLNFL 266
W V D +K + LK+ + + + G L T +++ L+FL
Sbjct: 1099 WRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFL 1151
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 30.4 bits (67), Expect = 3.3
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 220 DATRAVKQKTGDFSASLKLQETLRGIQV--LGPT-LIQTFQKMTVTLNFLGSPPLTVCWR 276
+A AV G A K G+QV LG L+Q + T+T LGSP L
Sbjct: 751 EAVEAVAMVGGQLQAFWK-----HGVQVWALGSDQLLQELRDPTLTFRLLGSPRLECSGT 805
Query: 277 LKPECLPLEEGECHPVSVASTAYNLT 302
+ P C L G + + AS +T
Sbjct: 806 ISPHCNLLLPGSSNSPASASRVAGIT 831
>gi|116006953 polycystin 1-like 2 isoform c [Homo sapiens]
Length = 991
Score = 30.4 bits (67), Expect = 3.3
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 256 FQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECH---PVSVASTAYNLTHTFRDPGDYC 312
F +T++L +L SP + C+ + G+ H P + S + N+TH F PG+
Sbjct: 266 FDNVTISLTWLLSPYIG-----NLSCI-ISTGDSHTFDPYNPPSVSSNVTHQFTSPGE-- 317
Query: 313 FSIRAENIISKTHQYHKIQV 332
F++ AE S+ H + QV
Sbjct: 318 FTVFAECTTSEWHVTAQRQV 337
>gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens]
Length = 2459
Score = 30.4 bits (67), Expect = 3.3
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 256 FQKMTVTLNFLGSPPLTVCWRLKPECLPLEEGECH---PVSVASTAYNLTHTFRDPGDYC 312
F +T++L +L SP + C+ + G+ H P + S + N+TH F PG+
Sbjct: 266 FDNVTISLTWLLSPYIG-----NLSCI-ISTGDSHTFDPYNPPSVSSNVTHQFTSPGE-- 317
Query: 313 FSIRAENIISKTHQYHKIQV 332
F++ AE S+ H + QV
Sbjct: 318 FTVFAECTTSEWHVTAQRQV 337
>gi|24308414 solute carrier family 10, member 4 [Homo sapiens]
Length = 437
Score = 29.6 bits (65), Expect = 5.6
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 23 PAGVAAGLYELNLTTDSPATTGAVVTISASLVAKDNGSLALPADAHLYRFHWIHTPLVL- 81
P G + L ++L D ++TIS++L+A + +P +Y + WI+TP+V
Sbjct: 178 PGGNLSNL--MSLLVDGDMNLSIIMTISSTLLAL----VLMPLCLWIYSWAWINTPIVQL 231
Query: 82 --TGKMEKGLSSTIRVVG 97
G + L ST+ +G
Sbjct: 232 LPLGTVTLTLCSTLIPIG 249
>gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens]
Length = 1086
Score = 29.6 bits (65), Expect = 5.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 100 PGEFPVSVWVTAADCWMCQPVARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKV 159
PGE ++ AA C C+ + VLP T+ LVG ++ +N +Y + +V
Sbjct: 148 PGEDVIASERAAALCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRV 207
>gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens]
Length = 1133
Score = 29.6 bits (65), Expect = 5.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 100 PGEFPVSVWVTAADCWMCQPVARGFVVLPITEFLVGDLVVTQNTSLPWPSSYLTKTVLKV 159
PGE ++ AA C C+ + VLP T+ LVG ++ +N +Y + +V
Sbjct: 148 PGEDVIASERAAALCNACELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRV 207
>gi|253970427 immunoglobulin superfamily, member 22 [Homo sapiens]
Length = 1326
Score = 29.3 bits (64), Expect = 7.3
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 27/114 (23%)
Query: 226 KQKTGDFSASLKLQETL------RGIQVLGPTLIQTFQKMTVTLNFLGSPPLTVCWRLKP 279
K + D SA LK E R + L P + Q T+T FLG+P TV
Sbjct: 1191 KDQIQDLSAKLKPYEKKDWRHAPRFVTPLKPHTVLRGQDCTMTCAFLGNPRPTV------ 1244
Query: 280 ECLPLEEGECHPVSVASTAYNLTH----------TFRDPGDYCFSIRAENIISK 323
L +G+ + + + YN T T +D GDY S+ EN + K
Sbjct: 1245 ---TLYKGDVNITANSKFWYNSTSGVCTLVIPTCTLKDSGDY--SVLVENELGK 1293
>gi|27894376 cell adhesion molecule with homology to L1CAM precursor
[Homo sapiens]
Length = 1224
Score = 29.3 bits (64), Expect = 7.3
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 265 FLGSPPLTVCWRLKPECLPLEEGECHPVSVASTAYNLTHTFRDPGDYCFSIRAENIISKT 324
F SP V W+ E PLE H + N T T D G Y S EN I KT
Sbjct: 463 FFASPEAVVSWQKVEEVKPLEGRRYHIYENGTLQINRT-TEEDAGSY--SCWVENAIGKT 519
>gi|151301013 CD200 cell surface glycoprotein receptor 2 [Homo
sapiens]
Length = 271
Score = 29.3 bits (64), Expect = 7.3
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 188 VTEDSVVYYNYSIIGTFTVKLKVVAEWEEVEPDATRAVKQKTGDFSASLKLQETLR 243
+ E S++ G TV +K WE + T V TG+ S S+KL LR
Sbjct: 174 IPEGSILATKQEYWGNGTVTVKSTCPWEGHKSTVTCHVSHLTGNKSLSVKLNSGLR 229
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 29.3 bits (64), Expect = 7.3
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 380 SPMSDKNPEPPSGVRCCCQMCCGP 403
SP + P P C C CCGP
Sbjct: 49 SPAKPEEPGAPEAAPCACCCCCGP 72
>gi|19923084 polycystin-1L1 [Homo sapiens]
Length = 2849
Score = 28.9 bits (63), Expect = 9.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 177 YSWDFGDGTQMVTEDSVVYYNYSIIGTFTVKL 208
Y WDFGDGT + S + YS G FTV++
Sbjct: 622 YLWDFGDGTVSLGSSSSSHV-YSREGEFTVEV 652
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,234,518
Number of Sequences: 37866
Number of extensions: 764968
Number of successful extensions: 1829
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1792
Number of HSP's gapped (non-prelim): 45
length of query: 435
length of database: 18,247,518
effective HSP length: 105
effective length of query: 330
effective length of database: 14,271,588
effective search space: 4709624040
effective search space used: 4709624040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.