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Search of human proteins with 197304731
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197304731 cytochrome b-561 domain containing 1 isoform 4
[Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom... 280 2e-76
gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Hom... 205 1e-53
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom... 174 2e-44
gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo... 101 2e-22
gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens] 46 1e-05
gi|9624988 hypothetical protein LOC56260 [Homo sapiens] 45 1e-05
gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens] 44 4e-05
gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens] 37 0.005
gi|224451053 homeobox C14 [Homo sapiens] 37 0.006
gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens] 35 0.013
gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens] 33 0.087
gi|157739932 mesogenin 1 [Homo sapiens] 32 0.19
gi|169217799 PREDICTED: hypothetical protein [Homo sapiens] 30 0.43
gi|239752508 PREDICTED: hypothetical protein XP_002347011 [Homo ... 30 0.43
gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo ... 30 0.43
gi|118600985 zinc finger protein 91 [Homo sapiens] 29 1.3
gi|239744265 PREDICTED: hypothetical protein XP_002343107 [Homo ... 28 2.2
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 28 2.2
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s... 28 2.2
gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo sa... 28 2.2
gi|157266334 tubby like protein 1 [Homo sapiens] 28 2.2
gi|168823435 hypothetical protein LOC79747 [Homo sapiens] 28 2.2
gi|154090997 coiled-coil domain containing 13 [Homo sapiens] 28 2.2
gi|148839342 ATP-grasp domain containing 1 [Homo sapiens] 28 2.8
gi|40805106 fucosyltransferase 10 [Homo sapiens] 27 3.7
gi|5729925 melanoma inhibitory activity [Homo sapiens] 27 3.7
gi|239756568 PREDICTED: similar to BCL2-associated transcription... 27 4.8
gi|239755418 PREDICTED: hypothetical protein [Homo sapiens] 27 4.8
gi|169218320 PREDICTED: similar to BCL2-associated transcription... 27 4.8
gi|239749898 PREDICTED: hypothetical protein [Homo sapiens] 27 4.8
>gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo
sapiens]
Length = 133
Score = 280 bits (717), Expect = 2e-76
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE
Sbjct: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
Query: 61 GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWRSASAWLKPSYSSHLNTPCSSSAP 120
GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWRSASAWLKPSYSSHLNTPCSSSAP
Sbjct: 61 GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWRSASAWLKPSYSSHLNTPCSSSAP 120
Query: 121 EKHGSGSTGQGRP 133
EKHGSGSTGQGRP
Sbjct: 121 EKHGSGSTGQGRP 133
>gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Homo
sapiens]
Length = 128
Score = 205 bits (521), Expect = 1e-53
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE
Sbjct: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
Query: 61 GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWR 97
GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWR
Sbjct: 61 GGRARWVMPEIPALWEADAGGSLEVFSPGTLYSWPWR 97
>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
sapiens]
Length = 251
Score = 174 bits (440), Expect = 2e-44
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE
Sbjct: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPLMEDRSE 60
Query: 61 GGRARWVMPEIPALWEADAGGSLE 84
GGRARWVMPEIPALWEADAGGSLE
Sbjct: 61 GGRARWVMPEIPALWEADAGGSLE 84
>gi|32698982 cytochrome b-561 domain containing 1 isoform 2 [Homo
sapiens]
Length = 229
Score = 101 bits (251), Expect = 2e-22
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT 49
MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT
Sbjct: 1 MQPLEVGLVPAPAGEPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT 49
>gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens]
Length = 573
Score = 45.8 bits (107), Expect = 1e-05
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 47 PGTKTGPLMEDRSEGGRARWVMPEIPALWEADAGGSLEV 85
P + T L D + G+A W P IPALWEA+A GSLEV
Sbjct: 223 PSSLTSSLCTDNNPAGQAYWFTPVIPALWEAEARGSLEV 261
>gi|9624988 hypothetical protein LOC56260 [Homo sapiens]
Length = 159
Score = 45.4 bits (106), Expect = 1e-05
Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 3/38 (7%)
Query: 62 GRARWVMPEIPALWEADAGGSLEVFSPGTLYSWP-WRS 98
GRARW+MP IPALWEA AG S EV S + +WP WR+
Sbjct: 36 GRARWLMPVIPALWEAKAGRSPEVRS--SKPAWPTWRN 71
>gi|5901884 cytochrome b-561 domain containing 2 [Homo sapiens]
Length = 222
Score = 43.9 bits (102), Expect = 4e-05
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 15 EPRLTRWLRRGSGILAHLVALGFTIFLTALSRPGT 49
E + R LR SG AHLVALGFTIF+ L+RPG+
Sbjct: 8 ESHIYRALRTASGAAAHLVALGFTIFVAVLARPGS 42
>gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]
Length = 161
Score = 37.0 bits (84), Expect = 0.005
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 62 GRARWVMPEIPALWEADAGG 81
GRARW+ P IPALWEA+A G
Sbjct: 61 GRARWLTPVIPALWEAEACG 80
>gi|224451053 homeobox C14 [Homo sapiens]
Length = 188
Score = 36.6 bits (83), Expect = 0.006
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 63 RARWVMPEIPALWEADAGGS 82
RARW+ P IPALWEA+AG S
Sbjct: 3 RARWLTPVIPALWEAEAGRS 22
>gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens]
Length = 99
Score = 35.4 bits (80), Expect = 0.013
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 64 ARWVMPEIPALWEADAGGSLEVFS 87
ARW+ P IPALW+A+AGG E+ S
Sbjct: 68 ARWLTPVIPALWKAEAGGLPELRS 91
>gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]
Length = 141
Score = 32.7 bits (73), Expect = 0.087
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 47 PGTKTGP---LMEDRSEGGRARWVMPEIPALWEADAGGSLE 84
P +GP L G P IPALWEA+AGGS E
Sbjct: 91 PHMSSGPSSVLFSSIKSDGPGTMATPVIPALWEAEAGGSPE 131
>gi|157739932 mesogenin 1 [Homo sapiens]
Length = 193
Score = 31.6 bits (70), Expect = 0.19
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
Query: 87 SPGTLYSWPWR-------------SASAWLKPSYSSHLNTPCSSSA--PEKHGSGSTG 129
SPG L SW W+ S S PS S+ ++PC + A P +HG S+G
Sbjct: 20 SPGLLSSWDWKDRAGPFELNQASPSQSLSPAPSLESYSSSPCPAVAGLPCEHGGASSG 77
>gi|169217799 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 0.43
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 49 TKTGPLMEDRSEGGRARWVMPEIP 72
TK G L +S +A+W+MPEIP
Sbjct: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
>gi|239752508 PREDICTED: hypothetical protein XP_002347011 [Homo
sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 0.43
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 49 TKTGPLMEDRSEGGRARWVMPEIP 72
TK G L +S +A+W+MPEIP
Sbjct: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
>gi|239743770 PREDICTED: hypothetical protein XP_002342956 [Homo
sapiens]
Length = 149
Score = 30.4 bits (67), Expect = 0.43
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 49 TKTGPLMEDRSEGGRARWVMPEIP 72
TK G L +S +A+W+MPEIP
Sbjct: 50 TKMGMLSTSKSNASQAQWLMPEIP 73
>gi|118600985 zinc finger protein 91 [Homo sapiens]
Length = 1191
Score = 28.9 bits (63), Expect = 1.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 67 VMPEIPALWEADAGGS 82
+ P IP LWEA+AGGS
Sbjct: 1158 ITPVIPLLWEAEAGGS 1173
>gi|239744265 PREDICTED: hypothetical protein XP_002343107 [Homo
sapiens]
Length = 138
Score = 28.1 bits (61), Expect = 2.2
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 54 LMEDRSEGGRARWVMPEIP-ALWEADAGGSLEVFSPGTLYSWPWRSASAWLKPSYSSHLN 112
L +D+ G P IP A W G E+ G S P + +AW + + S +
Sbjct: 16 LKQDKGLGAVCPGGTPGIPVAFWAPRLAGGQEL---GHHLSLPIQLPTAWQQEEWGSAIA 72
Query: 113 TPCSSSAPEKHGSGSTGQGRP 133
PC +P++ + G P
Sbjct: 73 CPCPHVSPQRGNMRNGGTVLP 93
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 28.1 bits (61), Expect = 2.2
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 45 SRPGTKTGPLMEDRSEGGRARWVMPEIPALWEADAG---GSLEVFSPGTLYSWPWRSASA 101
+RP T GPL +P IPA A + +L+ F P L WP S A
Sbjct: 177 ARPPTPLGPL-----------GCVPTIPATASAASPLTFPTLDDFIPPHLQRWPHHSQPA 225
Query: 102 WLKPSYSSHLNTPCSSSAP 120
S++ TP S S P
Sbjct: 226 RASGSFAPISQTPPSFSPP 244
>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
sapiens]
Length = 1292
Score = 28.1 bits (61), Expect = 2.2
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 45 SRPGTKTGPLMEDRSEGGRARWVMPEIPALWEADAG---GSLEVFSPGTLYSWPWRSASA 101
+RP T GPL +P IPA A + +L+ F P L WP S A
Sbjct: 177 ARPPTPLGPL-----------GCVPTIPATASAASPLTFPTLDDFIPPHLQRWPHHSQPA 225
Query: 102 WLKPSYSSHLNTPCSSSAP 120
S++ TP S S P
Sbjct: 226 RASGSFAPISQTPPSFSPP 244
>gi|7661700 sorbin and SH3 domain containing 1 isoform 2 [Homo
sapiens]
Length = 816
Score = 28.1 bits (61), Expect = 2.2
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 45 SRPGTKTGPLMEDRSEGGRARWVMPEIPALWEADAG---GSLEVFSPGTLYSWPWRSASA 101
+RP T GPL +P IPA A + +L+ F P L WP S A
Sbjct: 145 ARPPTPLGPL-----------GCVPTIPATASAASPLTFPTLDDFIPPHLQRWPHHSQPA 193
Query: 102 WLKPSYSSHLNTPCSSSAP 120
S++ TP S S P
Sbjct: 194 RASGSFAPISQTPPSFSPP 212
>gi|157266334 tubby like protein 1 [Homo sapiens]
Length = 542
Score = 28.1 bits (61), Expect = 2.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 74 LWEADAGGSLEVFSPGTLYSWPWRSASAW-LKPSYSSHLNTPC-SSSAPEKHGSGSTGQG 131
+W +D+G E SP R A A L+ + +PC + S P K G+G TG+
Sbjct: 11 VWASDSGHEEESLSPEAPRRPKQRPAPAQRLRKKRTEAPESPCPTGSKPRKPGAGRTGRP 70
Query: 132 R 132
R
Sbjct: 71 R 71
>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
Length = 1667
Score = 28.1 bits (61), Expect = 2.2
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 65 RWVMPEIPALWEADAGGSLEVFSPGT-----LYSW-PW 96
RW++ EI A+W+ GG L + GT L W PW
Sbjct: 137 RWIISEIYAVWKIFNGGILSNYFKGTSGEPPLLPWKPW 174
>gi|154090997 coiled-coil domain containing 13 [Homo sapiens]
Length = 715
Score = 28.1 bits (61), Expect = 2.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 32 LVALGFTIFLTALSRPGT----KTGPLMEDRSEGGRARWVMPEIPALWEA 77
+ +LG T+ +AL+RP +T P D E + + EI ALW+A
Sbjct: 506 VTSLGHTLVESALTRPSLPSPHRTSPRFSDSPEQKGWQAQVSEIKALWQA 555
>gi|148839342 ATP-grasp domain containing 1 [Homo sapiens]
Length = 827
Score = 27.7 bits (60), Expect = 2.8
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 18 LTRWLRRGSGILAHLVALGFTIFLTALSRPGTKTGPL--MEDRSEGGRARWVMPEIPALW 75
LTR L G +A L FT L R G + L +E + G+ V E+ A
Sbjct: 92 LTRQLLAQQGGVAVPATLAFTYKPPGLLRGGDASLGLRLVELSGKEGQETLVKEEVEAFL 151
Query: 76 EADAGGSLEVFSPGTLYSWPWRSASAW 102
++A G + + L W WR AW
Sbjct: 152 RSEALGDILQVAV-KLSGWRWRGRQAW 177
>gi|40805106 fucosyltransferase 10 [Homo sapiens]
Length = 479
Score = 27.3 bits (59), Expect = 3.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 2 QPLEVGLVPAPAGEPRLTRWL 22
+PL++G+VP G P +T WL
Sbjct: 295 RPLKLGVVPVYYGSPSITDWL 315
>gi|5729925 melanoma inhibitory activity [Homo sapiens]
Length = 131
Score = 27.3 bits (59), Expect = 3.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 32 LVALGFTIFLTALSRPGTKTGPL 54
LV LG I L+A S PG + GP+
Sbjct: 5 LVCLGVIILLSAFSGPGVRGGPM 27
>gi|239756568 PREDICTED: similar to BCL2-associated transcription
factor 1 [Homo sapiens]
Length = 869
Score = 26.9 bits (58), Expect = 4.8
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 87 SPGTLYSWPWRSASAWLKPSYS---SHLNTPCSSS-----APEKHGSGSTGQG 131
SP + + P +S+S P S S NTP S +PE+ GSGS G G
Sbjct: 226 SPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNG 278
>gi|239755418 PREDICTED: hypothetical protein [Homo sapiens]
Length = 133
Score = 26.9 bits (58), Expect = 4.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 81 GSLEVFSPGTLYSWPWRSASAW 102
G +E FS SWP RS AW
Sbjct: 106 GPVETFSAAASPSWPLRSGRAW 127
>gi|169218320 PREDICTED: similar to BCL2-associated transcription
factor 1 isoform 2 [Homo sapiens]
Length = 869
Score = 26.9 bits (58), Expect = 4.8
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 87 SPGTLYSWPWRSASAWLKPSYS---SHLNTPCSSS-----APEKHGSGSTGQG 131
SP + + P +S+S P S S NTP S +PE+ GSGS G G
Sbjct: 226 SPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNG 278
>gi|239749898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 133
Score = 26.9 bits (58), Expect = 4.8
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 81 GSLEVFSPGTLYSWPWRSASAW 102
G +E FS SWP RS AW
Sbjct: 106 GPVETFSAAASPSWPLRSGRAW 127
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,695,178
Number of Sequences: 37866
Number of extensions: 318852
Number of successful extensions: 872
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 47
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.