Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 195947397
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195947397 presenilin 1 isoform I-463 [Homo sapiens]
(463 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195947397 presenilin 1 isoform I-463 [Homo sapiens] 919 0.0
gi|4506163 presenilin 1 isoform I-467 [Homo sapiens] 913 0.0
gi|156105679 presenilin 2 isoform 1 [Homo sapiens] 553 e-157
gi|156105681 presenilin 2 isoform 2 [Homo sapiens] 551 e-157
gi|68223315 CD47 antigen isoform 3 precursor [Homo sapiens] 42 0.002
gi|38683836 CD47 antigen isoform 2 precursor [Homo sapiens] 42 0.002
gi|4502673 CD47 antigen isoform 1 precursor [Homo sapiens] 42 0.002
gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b... 34 0.32
gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform... 34 0.32
gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo ... 32 1.2
gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo ... 32 1.2
gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo ... 32 1.2
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 31 2.1
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens] 31 2.1
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens] 31 2.1
gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens] 31 2.1
gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens] 31 2.7
gi|21314755 signal peptide peptidase-like 2A [Homo sapiens] 31 2.7
gi|18034692 CDW92 antigen [Homo sapiens] 31 2.7
gi|4505999 protein phosphatase 1G [Homo sapiens] 30 3.5
gi|29826282 protein phosphatase 1G [Homo sapiens] 30 3.5
gi|148228819 G protein-coupled receptor 89A isoform 1 [Homo sapi... 30 4.6
gi|7706704 G protein-coupled receptor 89B [Homo sapiens] 30 4.6
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 30 4.6
gi|94721321 coiled-coil domain containing 11 [Homo sapiens] 30 4.6
gi|52218862 olfactory receptor, family 13, subfamily J, member 1... 30 4.6
gi|57977305 G protein-coupled receptor 151 [Homo sapiens] 30 4.6
gi|21735492 protein phosphatase 1, regulatory (inhibitor) subuni... 30 6.0
gi|4502805 chromogranin A precursor [Homo sapiens] 30 6.0
gi|31415880 protein phosphatase 1, regulatory (inhibitor) subuni... 30 6.0
>gi|195947397 presenilin 1 isoform I-463 [Homo sapiens]
Length = 463
Score = 919 bits (2375), Expect = 0.0
Identities = 463/463 (100%), Positives = 463/463 (100%)
Query: 1 MTELPAPLSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVE 60
MTELPAPLSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVE
Sbjct: 1 MTELPAPLSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVE 60
Query: 61 QDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTEDTET 120
QDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTEDTET
Sbjct: 61 QDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTEDTET 120
Query: 121 VGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGE 180
VGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGE
Sbjct: 121 VGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGE 180
Query: 181 VFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPEW 240
VFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPEW
Sbjct: 181 VFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPEW 240
Query: 241 TAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGDPE 300
TAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGDPE
Sbjct: 241 TAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGDPE 300
Query: 301 AQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAVQEL 360
AQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAVQEL
Sbjct: 301 AQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAVQEL 360
Query: 361 SSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLL 420
SSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLL
Sbjct: 361 SSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLL 420
Query: 421 LAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 463
LAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI
Sbjct: 421 LAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 463
>gi|4506163 presenilin 1 isoform I-467 [Homo sapiens]
Length = 467
Score = 913 bits (2360), Expect = 0.0
Identities = 463/467 (99%), Positives = 463/467 (99%), Gaps = 4/467 (0%)
Query: 1 MTELPAPLSYFQNAQMSEDNHLSNT----NDNRERQEHNDRRSLGHPEPLSNGRPQGNSR 56
MTELPAPLSYFQNAQMSEDNHLSNT NDNRERQEHNDRRSLGHPEPLSNGRPQGNSR
Sbjct: 1 MTELPAPLSYFQNAQMSEDNHLSNTVRSQNDNRERQEHNDRRSLGHPEPLSNGRPQGNSR 60
Query: 57 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTE 116
QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTE
Sbjct: 61 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTE 120
Query: 117 DTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI 176
DTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI
Sbjct: 121 DTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFI 180
Query: 177 YLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKY 236
YLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKY
Sbjct: 181 YLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKY 240
Query: 237 LPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAE 296
LPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAE
Sbjct: 241 LPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAE 300
Query: 297 GDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAA 356
GDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAA
Sbjct: 301 GDPEAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAA 360
Query: 357 VQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL 416
VQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL
Sbjct: 361 VQELSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCL 420
Query: 417 TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 463
TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI
Sbjct: 421 TLLLLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 467
>gi|156105679 presenilin 2 isoform 1 [Homo sapiens]
Length = 448
Score = 553 bits (1425), Expect = e-157
Identities = 303/464 (65%), Positives = 343/464 (73%), Gaps = 42/464 (9%)
Query: 3 ELPAPLSYFQNAQMSEDNHLS---NTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVV 59
E P P S + Q ED + + +N E E + R + P GRP G
Sbjct: 24 ESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVP---GRPPGL----- 75
Query: 60 EQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTEDTE 119
+EELTLKYGAKHVIMLFVPVTLCM+VVVATIKSV FYT K+GQLIYTPFTEDT
Sbjct: 76 ------EEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTP 129
Query: 120 TVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLG 179
+VGQR L+S+LN IMISVIVVMTI LVVLYKYRCYK IH WLI+SSL+LLF F++IYLG
Sbjct: 130 SVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLG 189
Query: 180 EVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPE 239
EV KTYNVA+DY T+ L +WNFG VGM+ IHWKGPL LQQAYLIMISALMALVFIKYLPE
Sbjct: 190 EVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPE 249
Query: 240 WTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGDP 299
W+AW+IL ISVYDLVAVLCPKGPLRMLVETAQERNE +FPALIYSS MVW V MA+ DP
Sbjct: 250 WSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDP 309
Query: 300 EAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAVQE 359
+Q + Y+ E E +S D+ E + E +E + G +E
Sbjct: 310 SSQGAL--QLPYDPE-MEEDSYDSFGE---PSYPEVFEPPLTGYPG------------EE 351
Query: 360 LSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLL 419
L E+ EERGVKLGLGDFIFYSVLVGKA+AT SGDWNTT+ACFVAILIGLCLTLL
Sbjct: 352 L-------EEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLTLL 404
Query: 420 LLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 463
LLA+FKKALPALPISITFGL+FYF+TD LV+PFMD LA HQ YI
Sbjct: 405 LLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 448
>gi|156105681 presenilin 2 isoform 2 [Homo sapiens]
Length = 447
Score = 551 bits (1420), Expect = e-157
Identities = 299/464 (64%), Positives = 340/464 (73%), Gaps = 43/464 (9%)
Query: 3 ELPAPLSYFQNAQMSEDNHLS---NTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVV 59
E P P S + Q ED + + +N E E + R + P GRP G
Sbjct: 24 ESPTPRSCQEGRQGPEDGENTAQWRSQENEEDGEEDPDRYVCSGVP---GRPPGL----- 75
Query: 60 EQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLIYTPFTEDTE 119
+EELTLKYGAKHVIMLFVPVTLCM+VVVATIKSV FYT K+GQLIYTPFTEDT
Sbjct: 76 ------EEELTLKYGAKHVIMLFVPVTLCMIVVVATIKSVRFYTEKNGQLIYTPFTEDTP 129
Query: 120 TVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLG 179
+VGQR L+S+LN IMISVIVVMTI LVVLYKYRCYK IH WLI+SSL+LLF F++IYLG
Sbjct: 130 SVGQRLLNSVLNTLIMISVIVVMTIFLVVLYKYRCYKFIHGWLIMSSLMLLFLFTYIYLG 189
Query: 180 EVFKTYNVAVDYITVALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPE 239
EV KTYNVA+DY T+ L +WNFG VGM+ IHWKGPL LQQAYLIMISALMALVFIKYLPE
Sbjct: 190 EVLKTYNVAMDYPTLLLTVWNFGAVGMVCIHWKGPLVLQQAYLIMISALMALVFIKYLPE 249
Query: 240 WTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGDP 299
W+AW+IL ISVYDLVAVLCPKGPLRMLVETAQERNE +FPALIYSS MVW V MA+ DP
Sbjct: 250 WSAWVILGAISVYDLVAVLCPKGPLRMLVETAQERNEPIFPALIYSSAMVWTVGMAKLDP 309
Query: 300 EAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRSTPESRAAVQE 359
+Q + + E +D+ + + E +E + G +E
Sbjct: 310 SSQGALQL-------PYDPEMEDSYDSFGEPSYPEVFEPPLTGYPG------------EE 350
Query: 360 LSSSILAGEDPEERGVKLGLGDFIFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLL 419
L E+ EERGVKLGLGDFIFYSVLVGKA+AT SGDWNTT+ACFVAILIGLCLTLL
Sbjct: 351 L-------EEEEERGVKLGLGDFIFYSVLVGKAAATGSGDWNTTLACFVAILIGLCLTLL 403
Query: 420 LLAIFKKALPALPISITFGLVFYFATDYLVQPFMDQLAFHQFYI 463
LLA+FKKALPALPISITFGL+FYF+TD LV+PFMD LA HQ YI
Sbjct: 404 LLAVFKKALPALPISITFGLIFYFSTDNLVRPFMDTLASHQLYI 447
>gi|68223315 CD47 antigen isoform 3 precursor [Homo sapiens]
Length = 312
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 57 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLI-YTPFT 115
+V E E + + LKY V+ F P ++V+ + F+ + + + Y
Sbjct: 115 EVTELTREGETIIELKY---RVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGG 171
Query: 116 EDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSF 175
D +T+ ++L A ++I+VIV++ +L V +Y LI++S +L +
Sbjct: 172 MDEKTI------ALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHY 225
Query: 176 IYLGEVFKTYNVAVDYITVALLIWNFGVVGM-----ISIHWKGPLRLQQAYLIMISALMA 230
+ + + + ++ + VVG+ I GPL + ++ ++ L+
Sbjct: 226 YVFSTAIGLTSFVIAILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLG 285
Query: 231 LVFIKYL 237
LV++K++
Sbjct: 286 LVYMKFV 292
>gi|38683836 CD47 antigen isoform 2 precursor [Homo sapiens]
Length = 305
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 57 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLI-YTPFT 115
+V E E + + LKY V+ F P ++V+ + F+ + + + Y
Sbjct: 115 EVTELTREGETIIELKY---RVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGG 171
Query: 116 EDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSF 175
D +T+ ++L A ++I+VIV++ +L V +Y LI++S +L +
Sbjct: 172 MDEKTI------ALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHY 225
Query: 176 IYLGEVFKTYNVAVDYITVALLIWNFGVVGM-----ISIHWKGPLRLQQAYLIMISALMA 230
+ + + + ++ + VVG+ I GPL + ++ ++ L+
Sbjct: 226 YVFSTAIGLTSFVIAILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLG 285
Query: 231 LVFIKYL 237
LV++K++
Sbjct: 286 LVYMKFV 292
>gi|4502673 CD47 antigen isoform 1 precursor [Homo sapiens]
Length = 323
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/187 (20%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 57 QVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKDGQLI-YTPFT 115
+V E E + + LKY V+ F P ++V+ + F+ + + + Y
Sbjct: 115 EVTELTREGETIIELKY---RVVSWFSPNENILIVIFPIFAILLFWGQFGIKTLKYRSGG 171
Query: 116 EDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSF 175
D +T+ ++L A ++I+VIV++ +L V +Y LI++S +L +
Sbjct: 172 MDEKTI------ALLVAGLVITVIVIVGAILFVPGEYSLKNATGLGLIVTSTGILILLHY 225
Query: 176 IYLGEVFKTYNVAVDYITVALLIWNFGVVGM-----ISIHWKGPLRLQQAYLIMISALMA 230
+ + + + ++ + VVG+ I GPL + ++ ++ L+
Sbjct: 226 YVFSTAIGLTSFVIAILVIQVIAYILAVVGLSLCIAACIPMHGPLLISGLSILALAQLLG 285
Query: 231 LVFIKYL 237
LV++K++
Sbjct: 286 LVYMKFV 292
>gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b
[Homo sapiens]
Length = 933
Score = 33.9 bits (76), Expect = 0.32
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 261 KGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGDPEAQRRVSKNSKYNAESTERES 320
K LR V T + + L +Y+S W + E D + + + K + E E ES
Sbjct: 414 KSMLRPEVGTTSQ-DSALLDQELYNSFHFWRTPLPEIDLDIELEQNSGGKPSPEGPEEES 472
Query: 321 QDTVAENDDGGFSEEWEAQR-DSHLGPHRSTPESRAAVQELSSSILAGE-DPEERGVKL 377
+ V + + + E + +L PH P+ +A V+ LS+++ A D E + +
Sbjct: 473 EGPVPSSPNITMATRKELEEMIENLEPHIDDPDVKAQVEVLSAALRASSLDAHEETISI 531
>gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform a
[Homo sapiens]
Length = 950
Score = 33.9 bits (76), Expect = 0.32
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 261 KGPLRMLVETAQERNETLFPALIYSSTMVWLVNMAEGDPEAQRRVSKNSKYNAESTERES 320
K LR V T + + L +Y+S W + E D + + + K + E E ES
Sbjct: 431 KSMLRPEVGTTSQ-DSALLDQELYNSFHFWRTPLPEIDLDIELEQNSGGKPSPEGPEEES 489
Query: 321 QDTVAENDDGGFSEEWEAQR-DSHLGPHRSTPESRAAVQELSSSILAGE-DPEERGVKL 377
+ V + + + E + +L PH P+ +A V+ LS+++ A D E + +
Sbjct: 490 EGPVPSSPNITMATRKELEEMIENLEPHIDDPDVKAQVEVLSAALRASSLDAHEETISI 548
>gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo
sapiens]
Length = 426
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 377 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 431
LGLGD IF ++L+ + F A + GL LT+ ++ IFK A PAL
Sbjct: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
Query: 432 ---PISITFGLVFYFATDYLVQPF 452
P I F ++ A + + F
Sbjct: 321 YLVPACIGFPVLVALAKGEVTEMF 344
>gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo
sapiens]
Length = 394
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 377 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 431
LGLGD IF ++L+ + F A + GL LT+ ++ IFK A PAL
Sbjct: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
Query: 432 ---PISITFGLVFYFATDYLVQPF 452
P I F ++ A + + F
Sbjct: 321 YLVPACIGFPVLVALAKGEVTEMF 344
>gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo
sapiens]
Length = 377
Score = 32.0 bits (71), Expect = 1.2
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 377 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 431
LGLGD IF ++L+ + F A + GL LT+ ++ IFK A PAL
Sbjct: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
Query: 432 ---PISITFGLVFYFATDYLVQPF 452
P I F ++ A + + F
Sbjct: 321 YLVPACIGFPVLVALAKGEVTEMF 344
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 31.2 bits (69), Expect = 2.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 8 LSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEEDE 67
+S +++ SE+ ++D E + +RRS E + + E DEEE+E
Sbjct: 1 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE 60
Query: 68 E 68
E
Sbjct: 61 E 61
>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 31.2 bits (69), Expect = 2.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 8 LSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEEDE 67
+S +++ SE+ ++D E + +RRS E + + E DEEE+E
Sbjct: 1 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE 60
Query: 68 E 68
E
Sbjct: 61 E 61
>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 31.2 bits (69), Expect = 2.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 8 LSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEEDE 67
+S +++ SE+ ++D E + +RRS E + + E DEEE+E
Sbjct: 1 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE 60
Query: 68 E 68
E
Sbjct: 61 E 61
>gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 31.2 bits (69), Expect = 2.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 8 LSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEEDE 67
+S +++ SE+ ++D E + +RRS E + + E DEEE+E
Sbjct: 1 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE 60
Query: 68 E 68
E
Sbjct: 61 E 61
>gi|150421684 ATPase, class VI, type 11A isoform a [Homo sapiens]
Length = 1134
Score = 30.8 bits (68), Expect = 2.7
Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 39/159 (24%)
Query: 135 MISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITV 194
++ ++V T+ L + + I+ ++I SLL FS ++ G
Sbjct: 1007 LVFTVMVFTVTLKLALDTHYWTWINHFVIWGSLLFYVVFSLLWGG--------------- 1051
Query: 195 ALLIWNFGVVGMISIHWKGPLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDL 254
+IW F L Q+ Y VFI+ L AWL + ++ L
Sbjct: 1052 --VIWPF-------------LNYQRMYY---------VFIQMLSSGPAWLAIVLLVTISL 1087
Query: 255 VAVLCPKGPLRMLVETAQERNETLFPALIYSSTMVWLVN 293
+ + K R L TA ER +T L + +++++
Sbjct: 1088 LPDVLKKVLCRQLWPTATERVQTKSQCLSVEQSTIFMLS 1126
>gi|21314755 signal peptide peptidase-like 2A [Homo sapiens]
Length = 520
Score = 30.8 bits (68), Expect = 2.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 377 LGLGDFIFYSVLVG---KASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL 431
LG GD I +L+ + + ++ VA IG+ LT ++L + KK PAL
Sbjct: 408 LGFGDIIVPGLLIAYCRRFDVQTGSSYIYYVSSTVAYAIGMILTFVVLVLMKKGQPAL 465
>gi|18034692 CDW92 antigen [Homo sapiens]
Length = 657
Score = 30.8 bits (68), Expect = 2.7
Identities = 38/235 (16%), Positives = 93/235 (39%), Gaps = 12/235 (5%)
Query: 47 SNGRPQGNSRQVVEQDEEEDEELTLKYGAKHVIMLFVPVTLCMVVVVATIKSVSFYTRKD 106
+ G P N + VE + Y +I + + C + VA ++TR
Sbjct: 361 TTGSPVQNEQGFVEFKISGPLQYMWWYHVVGLIWISEFILACQQMTVAGAVVTYYFTRDK 420
Query: 107 GQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLY------KYRCYKVIHA 160
L +TP + + L ++ + +I+++ + ++L+ ++ + C + +
Sbjct: 421 RNLPFTPILASVNRLIRYHLGTVAKGSFIITLVKIPRMILMYIHSQLKGKENACARCVLK 480
Query: 161 WLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVA-----LLIWNFGVVGMISIHWKGPL 215
I L +++ T + ++ T A +L+ N V I+ L
Sbjct: 481 SCICCLWCLEKCLNYLNQNAYTATAINSTNFCTSAKDAFVILVENALRVATINTVGDFML 540
Query: 216 RLQQAYLIMISALMALVFIKYLPEWTAWLI-LAVISVYDLVAVLCPKGPLRMLVE 269
L + ++ + L ++ + Y ++T W++ L ++ ++ + C M+V+
Sbjct: 541 FLGKVLIVCSTGLAGIMLLNYQQDYTVWVLPLIIVCLFAFLVAHCFLSIYEMVVD 595
>gi|4505999 protein phosphatase 1G [Homo sapiens]
Length = 546
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 6 APLSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEE 65
A +F++++ D D+ E E D S E N + ++ + E DEEE
Sbjct: 252 AKSKFFEDSEDESDEAEEEEEDSEECSEEEDGYS---SEEAENEEDEDDTEEAEEDDEEE 308
Query: 66 DEEL 69
+EE+
Sbjct: 309 EEEM 312
>gi|29826282 protein phosphatase 1G [Homo sapiens]
Length = 546
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 6 APLSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQDEEE 65
A +F++++ D D+ E E D S E N + ++ + E DEEE
Sbjct: 252 AKSKFFEDSEDESDEAEEEEEDSEECSEEEDGYS---SEEAENEEDEDDTEEAEEDDEEE 308
Query: 66 DEEL 69
+EE+
Sbjct: 309 EEEM 312
>gi|148228819 G protein-coupled receptor 89A isoform 1 [Homo
sapiens]
Length = 455
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 124 RALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIY--LGEV 181
R H +N +++ ++V M + + +++H ++ S LL F + + LG+
Sbjct: 71 RYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTFMYFFWKLGDP 130
Query: 182 FKTYNVAVDYITVALLIWNFGVVGM 206
F + +++ LI GV+G+
Sbjct: 131 FPILSPKHGILSIEQLISRVGVIGV 155
>gi|7706704 G protein-coupled receptor 89B [Homo sapiens]
Length = 455
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 124 RALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIY--LGEV 181
R H +N +++ ++V M + + +++H ++ S LL F + + LG+
Sbjct: 71 RYFHWKMNLCVILLILVFMVPFYIGYFIVSNIRLLHKQRLLFSCLLWLTFMYFFWKLGDP 130
Query: 182 FKTYNVAVDYITVALLIWNFGVVGM 206
F + +++ LI GV+G+
Sbjct: 131 FPILSPKHGILSIEQLISRVGVIGV 155
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 30.0 bits (66), Expect = 4.6
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 1 MTELPAPLSYFQNAQMSEDNHLSNTNDNRERQEHNDRRSLGHPEPLSNGRPQGNSRQVVE 60
M E P+ LS Q + ++ ++ + E + + S G E + + + + E
Sbjct: 2383 MDEAPSNLSQASTLQANREDSMNILDPEDEEEHTQEEDSSGSNEDEDDSQDEEEEEEEDE 2442
Query: 61 QDEEEDEE 68
+D++ED+E
Sbjct: 2443 EDDQEDDE 2450
>gi|94721321 coiled-coil domain containing 11 [Homo sapiens]
Length = 514
Score = 30.0 bits (66), Expect = 4.6
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 300 EAQRRVSKNSKYNAESTERESQDTVAENDDGGFSEEWEAQRDSHLGPHRS--TPESRAAV 357
E + R+ + +K E E+E QD VAE D F E E R L H+ E +A +
Sbjct: 125 EKKDRMREKTKLLKEKNEKERQDFVAEKLDQQFRERCEELRVELLSIHQKKVCEERKAQI 184
Query: 358 ---QELSSSILAGE 368
+ELS L E
Sbjct: 185 AFNEELSRQKLVEE 198
>gi|52218862 olfactory receptor, family 13, subfamily J, member 1
[Homo sapiens]
Length = 312
Score = 30.0 bits (66), Expect = 4.6
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 112 TPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLF 171
T +ED G L + A I +S ++++ +L V RC K L +++LLF
Sbjct: 192 TSVSEDFLLAGSILLLPVPLAFICLSYLLILATILRVPSAARCCKAFSTCLAHLAVVLLF 251
Query: 172 FFS--FIYLGEVFKTYNVAVDYITV 194
+ + F+YL K +++ + TV
Sbjct: 252 YGTIIFMYLKPKSKEAHISDEVFTV 276
>gi|57977305 G protein-coupled receptor 151 [Homo sapiens]
Length = 419
Score = 30.0 bits (66), Expect = 4.6
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 223 IMISALMALVFIKYLPEWTAWLILAVISVYDLVAV--LCPKGPLRMLVETAQERNETLFP 280
+M+ ++ + + +LPEW AWL V+ L A P+G + + ++ L
Sbjct: 250 VMLLSIAIISALLWLPEWVAWL-----WVWHLKAAGPAPPQGFIAL--------SQVLMF 296
Query: 281 ALIYSSTMVWLVNMAEGDPEAQRRVSKNSKYNAESTERESQDTVAENDDG 330
++ ++ +++LV M+E E + V K T ESQ+T A N +G
Sbjct: 297 SISSANPLIFLV-MSEEFREGLKGVWKWMITKKPPTVSESQETPAGNSEG 345
>gi|21735492 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 1 [Homo sapiens]
Length = 204
Score = 29.6 bits (65), Expect = 6.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 5 PAPLSYFQNAQMSEDNHLSNTNDNR---ERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQ 61
P L Q S +SN N+N+ E E + R LG+P R+ E+
Sbjct: 76 PPSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGYP------------REEDEE 123
Query: 62 DEEEDEE 68
+EE+DEE
Sbjct: 124 EEEDDEE 130
>gi|4502805 chromogranin A precursor [Homo sapiens]
Length = 457
Score = 29.6 bits (65), Expect = 6.0
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 17 SEDNHLSNTNDNRERQEHNDR----RSLGHPEPLSNGRPQGNSRQVVEQDEEEDE 67
S + + D++E ++ + R PEP+ + +GN++ E++EEE+E
Sbjct: 125 SSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEE 179
>gi|31415880 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 2 [Homo sapiens]
Length = 168
Score = 29.6 bits (65), Expect = 6.0
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 5 PAPLSYFQNAQMSEDNHLSNTNDNR---ERQEHNDRRSLGHPEPLSNGRPQGNSRQVVEQ 61
P L Q S +SN N+N+ E E + R LG+P R+ E+
Sbjct: 40 PPSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGYP------------REEDEE 87
Query: 62 DEEEDEE 68
+EE+DEE
Sbjct: 88 EEEDDEE 94
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,556,402
Number of Sequences: 37866
Number of extensions: 704466
Number of successful extensions: 3209
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3153
Number of HSP's gapped (non-prelim): 59
length of query: 463
length of database: 18,247,518
effective HSP length: 106
effective length of query: 357
effective length of database: 14,233,722
effective search space: 5081438754
effective search space used: 5081438754
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.