Search of human proteins with 106507164

Search of human proteins with 106507164

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
         (244 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]         495   e-140
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]      189   2e-48
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]           182   2e-46
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]          182   2e-46
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]           181   5e-46
gi|16933567 mel transforming oncogene [Homo sapiens]                  181   7e-46
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]           179   2e-45
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap...   178   3e-45
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa...   178   3e-45
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]            178   3e-45
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]            178   3e-45
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]          176   2e-44
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]          173   1e-43
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]          172   2e-43
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]           171   7e-43
gi|50234889 RAB43 protein [Homo sapiens]                              162   2e-40
gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]          158   4e-39
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]          157   1e-38
gi|21361884 RAB2B protein isoform 1 [Homo sapiens]                    155   3e-38
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]           155   4e-38
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]         154   5e-38
gi|4758984 Ras-related protein Rab-11A [Homo sapiens]                 154   9e-38
gi|19923483 GTPase Rab14 [Homo sapiens]                               151   4e-37
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa...   150   1e-36
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]           150   1e-36
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]        148   4e-36
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]         146   1e-35
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]          145   4e-35
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa...   142   3e-34
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]         140   1e-33

>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
          Length = 244

 Score =  495 bits (1274), Expect = e-140
 Identities = 244/244 (100%), Positives = 244/244 (100%)

Query: 1   MDPGAALQRRAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLME 60
           MDPGAALQRRAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLME
Sbjct: 1   MDPGAALQRRAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLME 60

Query: 61  RFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 120
           RFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL
Sbjct: 61  RFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIIL 120

Query: 121 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGM 180
           VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGM
Sbjct: 121 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGM 180

Query: 181 RFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPH 240
           RFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPH
Sbjct: 181 RFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPH 240

Query: 241 VRCC 244
           VRCC
Sbjct: 241 VRCC 244


>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
          Length = 200

 Score =  189 bits (479), Expect = 2e-48
 Identities = 89/171 (52%), Positives = 131/171 (76%), Gaps = 1/171 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D   ++++IG  GVGKT ++ RF+DD F     ST+G+DFKIKTVEL+GKKI+LQIWDTA
Sbjct: 7   DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTA 66

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF++IT++YYR A GI+LVYDIT  ++F+++ KW++ ID++A+ED E +L+GNK D 
Sbjct: 67  GQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDM 126

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPL 210
           +  R + + +G + A++  G+RF E SAK N N+++ FL L +DIL+K P+
Sbjct: 127 DDKRVVPKGKGGQIARE-HGIRFFETSAKANINIEKAFLTLAEDILRKTPV 176


>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
          Length = 207

 Score =  182 bits (463), Expect = 2e-46
 Identities = 85/169 (50%), Positives = 126/169 (74%), Gaps = 1/169 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  ++++IG  GVGKT L+ RF++D F     ST+G+DFKI+T+EL GKKI+LQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTA 65

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF +IT+AYYR A GI+LVYDIT +++FD++  W++ I+++AS D E +++GNK D 
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDM 125

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 208
              R++++++GEK A    G++F E SAK + NV+E F  L  DI+ K+
Sbjct: 126 NDKRQVSKERGEKLAIDY-GIKFLETSAKSSANVEEAFFTLARDIMTKL 173


>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
          Length = 227

 Score =  182 bits (462), Expect = 2e-46
 Identities = 92/204 (45%), Positives = 134/204 (65%), Gaps = 4/204 (1%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  +++IIG+  VGKTS + R+ DD+F  A  STVG+DFK+KTV    K+I+LQIWDTA
Sbjct: 28  DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTA 87

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQER+ +IT+AYYR A G IL+YDIT +E+F+ +  W   I  Y+ ++A+++LVGNK D 
Sbjct: 88  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM 147

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
           E +R I+ ++G+   +Q+ G  F E SAKDN NV + F +LVD I  KM   +   E   
Sbjct: 148 EDERVISTERGQHLGEQL-GFEFFETSAKDNINVKQTFERLVDIICDKMSESL---ETDP 203

Query: 220 SILSLQPEPEIPPELPPPRPHVRC 243
           +I + +    +    PPP+P+  C
Sbjct: 204 AITAAKQNTRLKETPPPPQPNCAC 227


>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
          Length = 203

 Score =  181 bits (459), Expect = 5e-46
 Identities = 89/168 (52%), Positives = 121/168 (72%), Gaps = 1/168 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D   ++++IG  GVGKT L+ RF +D F     ST+G+DFKI+TV++ GKKI+LQ+WDTA
Sbjct: 6   DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTA 65

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF +IT+AYYR A GIILVYDIT +++F+++  WMK I + AS   E LL+GNK D 
Sbjct: 66  GQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM 125

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 207
           E  R++ ++Q +K A++  G+RF E SAK + NVDE F  L  DIL K
Sbjct: 126 EAKRKVQKEQADKLARE-HGIRFFETSAKSSMNVDEAFSSLARDILLK 172


>gi|16933567 mel transforming oncogene [Homo sapiens]
          Length = 207

 Score =  181 bits (458), Expect = 7e-46
 Identities = 87/190 (45%), Positives = 131/190 (68%), Gaps = 1/190 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  ++++IG  GVGKT ++ RF++D F     ST+G+DFKI+T+EL GK+I+LQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF +IT+AYYR A GI+LVYDIT +++FD++  W++ I+++AS D E +++GNK D 
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
              R++++++GEK A    G++F E SAK N NV+  F  L  DI  KM   +  N    
Sbjct: 126 NDKRQVSKERGEKLALDY-GIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQG 184

Query: 220 SILSLQPEPE 229
           S   ++  P+
Sbjct: 185 SNQGVKITPD 194


>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
          Length = 220

 Score =  179 bits (454), Expect = 2e-45
 Identities = 89/204 (43%), Positives = 133/204 (65%), Gaps = 3/204 (1%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  +++IIG+  VGKTS + R+ DD+F  A  STVG+DFK+KT+    K+I+LQIWDTA
Sbjct: 20  DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 79

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQER+ +IT+AYYR A G IL+YDIT +E+F+ +  W   I  Y+ ++A++LLVGNK D 
Sbjct: 80  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 139

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
           E +R ++ ++G + A  + G  F EASAKDN NV + F +LVD I +KM   +  +    
Sbjct: 140 EDERVVSSERGRQLADHL-GFEFFEASAKDNINVKQTFERLVDVICEKMSESL--DTADP 196

Query: 220 SILSLQPEPEIPPELPPPRPHVRC 243
           ++   +  P++  +  PP     C
Sbjct: 197 AVTGAKQGPQLSDQQVPPHQDCAC 220


>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
           sapiens]
          Length = 205

 Score =  178 bits (452), Expect = 3e-45
 Identities = 88/189 (46%), Positives = 130/189 (68%), Gaps = 1/189 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  ++++IG  GVGK+ L+ RF DDT+ E+  ST+GVDFKI+T+EL GK I+LQIWDTA
Sbjct: 9   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 68

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF +ITS+YYR A GII+VYD+T +E+F+++ +W++ ID+YASE+   LLVGNK D 
Sbjct: 69  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 128

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
            T + +     ++FA  + G+ F E SAK+  NV++ F+ +  +I K+M           
Sbjct: 129 TTKKVVDYTTAKEFADSL-GIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 187

Query: 220 SILSLQPEP 228
           S + +Q  P
Sbjct: 188 SNVKIQSTP 196


>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
           family [Homo sapiens]
          Length = 327

 Score =  178 bits (452), Expect = 3e-45
 Identities = 88/168 (52%), Positives = 120/168 (71%), Gaps = 1/168 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D   ++++IG  GVGKT L+ RF +D F     ST+G+DFKI+TV++ GKKI+LQ+WDTA
Sbjct: 130 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTA 189

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF +IT+AYYR A GIIL YDIT +++F+++  WMK I + AS   E LL+GNK D 
Sbjct: 190 GQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDM 249

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 207
           E  R++ ++Q +K A++  G+RF E SAK + NVDE F  L  DIL K
Sbjct: 250 EAKRKVQKEQADKLARE-HGIRFFETSAKSSMNVDEAFSSLARDILLK 296


>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score =  178 bits (452), Expect = 3e-45
 Identities = 88/168 (52%), Positives = 120/168 (71%), Gaps = 1/168 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D   ++++IG  GVGKT L+ RF +D F     ST+G+DFKI+TV++ GKKI+LQ+WDTA
Sbjct: 130 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTA 189

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF +IT+AYYR A GIIL YDIT +++F+++  WMK I + AS   E LL+GNK D 
Sbjct: 190 GQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDM 249

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 207
           E  R++ ++Q +K A++  G+RF E SAK + NVDE F  L  DIL K
Sbjct: 250 EAKRKVQKEQADKLARE-HGIRFFETSAKSSMNVDEAFSSLARDILLK 296


>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score =  178 bits (452), Expect = 3e-45
 Identities = 88/168 (52%), Positives = 120/168 (71%), Gaps = 1/168 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D   ++++IG  GVGKT L+ RF +D F     ST+G+DFKI+TV++ GKKI+LQ+WDTA
Sbjct: 130 DHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTA 189

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF +IT+AYYR A GIIL YDIT +++F+++  WMK I + AS   E LL+GNK D 
Sbjct: 190 GQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDM 249

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 207
           E  R++ ++Q +K A++  G+RF E SAK + NVDE F  L  DIL K
Sbjct: 250 EAKRKVQKEQADKLARE-HGIRFFETSAKSSMNVDEAFSSLARDILLK 296


>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
          Length = 201

 Score =  176 bits (446), Expect = 2e-44
 Identities = 84/169 (49%), Positives = 124/169 (73%), Gaps = 1/169 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  ++++IG  GVGK+ L+ RF DDT+ E+  ST+GVDFKI+T+EL GK I+LQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF +ITS+YYR A GII+VYD+T +E++ ++ +W++ ID+YASE+   LLVGNK D 
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 125

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 208
            T + +     ++FA  + G+ F E SAK+  NV++ F+ +  +I K+M
Sbjct: 126 TTKKVVDNTTAKEFADSL-GIPFLETSAKNATNVEQAFMTMAAEIKKRM 173


>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
          Length = 203

 Score =  173 bits (438), Expect = 1e-43
 Identities = 85/182 (46%), Positives = 128/182 (70%), Gaps = 1/182 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           DF  ++++IG+ GVGKT L+ RFT   F     +T+GVDF IKTVE+ G+K++LQIWDTA
Sbjct: 7   DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 66

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF SIT +YYRSA  +IL YDIT +E+F  LP+W++ I++YAS     +LVGNK+D 
Sbjct: 67  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 126

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
              RE+++Q+ E+F+ +   M + E SAK++ NV+++FL L   ++ +   + L N +S+
Sbjct: 127 AERREVSQQRAEEFS-EAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSS 185

Query: 220 SI 221
            +
Sbjct: 186 PL 187


>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
          Length = 219

 Score =  172 bits (436), Expect = 2e-43
 Identities = 84/169 (49%), Positives = 121/169 (71%), Gaps = 1/169 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  +++IIG+  VGKTS + R+ DDTF  A  STVG+DFK+KTV    K+++LQIWDTA
Sbjct: 20  DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA 79

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQER+ +IT+AYYR A G IL+YDIT +E+F+ +  W   I  Y+ ++A+++LVGNK D 
Sbjct: 80  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 139

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 208
           E +R +  ++G+  A+Q+ G  F EASAK+N +V + F +LVD I  KM
Sbjct: 140 EEERVVPTEKGQLLAEQL-GFDFFEASAKENISVRQAFERLVDAICDKM 187


>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
          Length = 219

 Score =  171 bits (432), Expect = 7e-43
 Identities = 90/205 (43%), Positives = 132/205 (64%), Gaps = 5/205 (2%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  ++++IG+  VGKTS + R+ DD+F  A  STVG+DFK+KTV    K+I+LQIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQER+ +IT+AYYR A G +L+YDI  +E+F  +  W   I  Y+ ++A+++LVGNK D 
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
           E +R +  + G + A  + G  F EASAK+N NV ++F +LVD I +KM   +   E S+
Sbjct: 140 EDERVVPAEDGRRLADDL-GFEFFEASAKENINVKQVFERLVDVICEKMNESL---EPSS 195

Query: 220 SILSLQPEPEIPPELPPPRPHVRCC 244
           S  S    P +  + P P+P    C
Sbjct: 196 SSGSNGKGPAV-GDAPAPQPSSCSC 219


>gi|50234889 RAB43 protein [Homo sapiens]
          Length = 212

 Score =  162 bits (411), Expect = 2e-40
 Identities = 77/181 (42%), Positives = 117/181 (64%)

Query: 27  GQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL 86
           G G     P    DF  +++++G   VGKT +++RF    F E   ST+GVDF +KT+E+
Sbjct: 3   GPGPGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI 62

Query: 87  RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE 146
           +GK+++LQIWDTAGQERF +IT +YYRSA G IL YDITK+ +F  +P W++ + KYA  
Sbjct: 63  QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS 122

Query: 147 DAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 206
           +   LL+GNK D    RE++  + +  A+    +   E SAKD+ NV+E FL++  +++ 
Sbjct: 123 NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 182

Query: 207 K 207
           +
Sbjct: 183 R 183


>gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]
          Length = 206

 Score =  158 bits (400), Expect = 4e-39
 Identities = 82/165 (49%), Positives = 117/165 (70%), Gaps = 3/165 (1%)

Query: 43  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 102
           L+++IIG  GVGK+SL+ RFTDDTF     +T+GVDFK+KT+ + G K +L IWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 103 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDCET 161
           RF ++T +YYR A+G+ILVYD+T+++TF  L  W+  ++ Y +  D   +LVGNK+D E 
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE- 127

Query: 162 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 206
           +RE+ R +G KFA++   M F EASAK    V   F +LV+ I++
Sbjct: 128 NREVDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQ 171


>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
          Length = 256

 Score =  157 bits (396), Expect = 1e-38
 Identities = 81/194 (41%), Positives = 119/194 (61%), Gaps = 10/194 (5%)

Query: 15  GGLGAGSPALSGGQGRRRKQPPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK-S 73
           G L  G P+L GG            D   +V+++G  GVGKT L+ RF D  F      S
Sbjct: 44  GPLQPGRPSLGGGVDFY--------DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIS 95

Query: 74  TVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL 133
           TVG+DF+ K +++ G K++LQ+WDTAGQERF S+T AYYR A  ++L+YD+T K +FD++
Sbjct: 96  TVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI 155

Query: 134 PKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 193
             W+  I +YA  D  L+L+GNK+D   +R + R+ GEK A++  G+ F E SAK   NV
Sbjct: 156 QAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPFMETSAKTGLNV 214

Query: 194 DEIFLKLVDDILKK 207
           D  F  +  ++ ++
Sbjct: 215 DLAFTAIAKELKQR 228


>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
          Length = 216

 Score =  155 bits (392), Expect = 3e-38
 Identities = 79/196 (40%), Positives = 123/196 (62%), Gaps = 1/196 (0%)

Query: 41  FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 100
           +  + IIIG  GVGK+ L+ +FTD  F      T+GV+F  + V + GK+I+LQIWDTAG
Sbjct: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 64

Query: 101 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 160
           QE F SIT +YYR A G +LVYDIT++ETF+ L  W++   +++S +  ++L+GNK D E
Sbjct: 65  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 124

Query: 161 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSNS 220
           + R++ R++GE FA++  G+ F E SAK   NV+E F+    +I +K+   +       +
Sbjct: 125 SRRDVKREEGEAFARE-HGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEAN 183

Query: 221 ILSLQPEPEIPPELPP 236
            + + P+  I   + P
Sbjct: 184 GIKIGPQQSISTSVGP 199


>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
          Length = 201

 Score =  155 bits (391), Expect = 4e-38
 Identities = 83/190 (43%), Positives = 126/190 (66%), Gaps = 4/190 (2%)

Query: 37  RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIW 96
           R  D   +++IIG  GVGK+SL+ RF D+TF  +  +T+GVDFKI+TVE+ G+K++LQIW
Sbjct: 3   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 62

Query: 97  DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNK 156
           DTAGQERF +ITS YYR   G+I+VYD+T  E+F ++ +W+  I++   +D   +LVGNK
Sbjct: 63  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNK 121

Query: 157 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL--KKMPLDILR 214
            D    + +  +   KFA Q+ G++  E SAK+N NV+E+F  + + +L  KK  L   +
Sbjct: 122 NDDPERKVVETEDAYKFAGQM-GIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 180

Query: 215 NELSNSILSL 224
            +  N ++ L
Sbjct: 181 QQQQNDVVKL 190


>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
          Length = 217

 Score =  154 bits (390), Expect = 5e-38
 Identities = 68/204 (33%), Positives = 124/204 (60%), Gaps = 1/204 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  ++I+IG   VGKT +++ F    + E  ++T+GVDF ++++++ GKK+++Q+WDTA
Sbjct: 15  DYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTA 74

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF +IT +YYRSA   I+ YD+T++ TF+ +P W+  I+KY + +  ++L+GNK D 
Sbjct: 75  GQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDL 134

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
              R +  +     A++   +   E SAK++ N++E+F+ +  +++ +  L +      N
Sbjct: 135 WEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLYGESALN 194

Query: 220 SILSLQPEPEIPPELPPPRPHVRC 243
             L L   P +  + P  + H  C
Sbjct: 195 G-LPLDSSPVLMAQGPSEKTHCTC 217


>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
          Length = 216

 Score =  154 bits (388), Expect = 9e-38
 Identities = 79/209 (37%), Positives = 127/209 (60%), Gaps = 8/209 (3%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++++ GK I+ QIWDTA
Sbjct: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 68

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQER+ +ITSAYYR A G +LVYDI K  T++++ +W+K +  +A  +  ++LVGNK D 
Sbjct: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 128

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELSN 219
              R +   +   FA++  G+ F E SA D+ NV+  F  ++ +I + +    + +   N
Sbjct: 129 RHLRAVPTDEARAFAEK-NGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRREN 187

Query: 220 SILSLQPEPEIPPELPPP----RPHVRCC 244
               + P   + P   PP    +P V+CC
Sbjct: 188 ---DMSPSNNVVPIHVPPTTENKPKVQCC 213


>gi|19923483 GTPase Rab14 [Homo sapiens]
          Length = 215

 Score =  151 bits (382), Expect = 4e-37
 Identities = 75/196 (38%), Positives = 122/196 (62%), Gaps = 3/196 (1%)

Query: 36  PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 95
           P    +  + IIIG  GVGK+ L+ +FT+  F   C  T+GV+F  + +E+ G+KI+LQI
Sbjct: 5   PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQI 64

Query: 96  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 155
           WDTAGQERF ++T +YYR A G ++VYDIT++ T++ L  W+       + +  ++L+GN
Sbjct: 65  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 124

Query: 156 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRN 215
           K D E  R++T ++ ++FA++  G+ F EASAK   NV++ FL+    I + +    L  
Sbjct: 125 KADLEAQRDVTYEEAKQFAEE-NGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSL-- 181

Query: 216 ELSNSILSLQPEPEIP 231
           +L+ +   +Q +P  P
Sbjct: 182 DLNAAESGVQHKPSAP 197


>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
           sapiens]
          Length = 223

 Score =  150 bits (379), Expect = 1e-36
 Identities = 77/187 (41%), Positives = 116/187 (62%), Gaps = 3/187 (1%)

Query: 20  GSPALSGGQGRRRKQPPRPA-DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK-STVGV 77
           G+ A   G+   R  P  P+ D   +V+++G  GVGKT  + +F D  F      +TVG+
Sbjct: 6   GAVATRDGEAPERSPPCSPSYDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGI 65

Query: 78  DFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM 137
           DF+ K V + G +++LQIWDTAGQERF S+T AYYR A+ ++L+YDIT K +FD++  W+
Sbjct: 66  DFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWL 125

Query: 138 KMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 197
             I +YA  D  ++L+GNK D  ++R I  + GE  A++  G+ F E SAK   NV+  F
Sbjct: 126 TEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREY-GVPFLETSAKTGMNVELAF 184

Query: 198 LKLVDDI 204
           L +  ++
Sbjct: 185 LAIAKEL 191


>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
          Length = 212

 Score =  150 bits (379), Expect = 1e-36
 Identities = 73/168 (43%), Positives = 114/168 (67%), Gaps = 1/168 (0%)

Query: 41  FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 100
           +  + IIIG  GVGK+ L+ +FTD  F      T+GV+F  + + + GK+I+LQIWDTAG
Sbjct: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 64

Query: 101 QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 160
           QE F SIT +YYR A G +LVYDIT+++TF+ L  W++   ++++ +  ++L+GNK D E
Sbjct: 65  QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 124

Query: 161 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 208
           + RE+ +++GE FA++  G+ F E SAK   NV+E F+    +I +K+
Sbjct: 125 SRREVKKEEGEAFARE-HGLIFMETSAKTASNVEEAFINTAKEIYEKI 171


>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
          Length = 218

 Score =  148 bits (374), Expect = 4e-36
 Identities = 79/212 (37%), Positives = 131/212 (61%), Gaps = 12/212 (5%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           D+  +V++IG  GVGK++L+ RFT + F    KST+GV+F  +++++ GK I+ QIWDTA
Sbjct: 9   DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 68

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQER+ +ITSAYYR A G +LVYDI K  T++++ +W+K +  +A  +  ++LVGNK D 
Sbjct: 69  GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 128

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK----KMPLDILRN 215
              R +   +   FA++   + F E SA D+ NV+E F  ++ +I +    K   D   +
Sbjct: 129 RHLRAVPTDEARAFAEK-NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 187

Query: 216 ELS--NSILSLQPEPEIPPELPPPRPH-VRCC 244
           + S  N+++ +     +PP     +P+ ++CC
Sbjct: 188 DESPGNNVVDI----SVPPTTDGQKPNKLQCC 215


>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
          Length = 213

 Score =  146 bits (369), Expect = 1e-35
 Identities = 73/169 (43%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           DF  + ++IGS G GK+ L+ +F ++ F +    T+GV+F  + V + GK ++LQIWDTA
Sbjct: 6   DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 65

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF S+T +YYR A G +LVYDIT +ET++ L  W+      AS +  ++L GNK D 
Sbjct: 66  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 125

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 208
           + +RE+T  +  +FAQ+   + F E SA    NV+E FLK    IL K+
Sbjct: 126 DPEREVTFLEASRFAQE-NELMFLETSALTGENVEEAFLKCARTILNKI 173


>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
          Length = 218

 Score =  145 bits (365), Expect = 4e-35
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 1/169 (0%)

Query: 40  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 99
           DF  + ++IG+ G GK+ L+ +F +  F +    T+GV+F  K + + GK ++LQIWDTA
Sbjct: 11  DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 70

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 159
           GQERF S+T +YYR A G +LVYDIT +ET++ L  W+      AS++  ++L GNK D 
Sbjct: 71  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 130

Query: 160 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 208
           + DRE+T  +  +FAQ+   + F E SA    NV+E F++    IL K+
Sbjct: 131 DADREVTFLEASRFAQE-NELMFLETSALTGENVEEAFVQCARKILNKI 178


>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
           sapiens]
          Length = 216

 Score =  142 bits (358), Expect = 3e-34
 Identities = 71/162 (43%), Positives = 104/162 (64%), Gaps = 2/162 (1%)

Query: 44  QVIIIGSRGVGKTSLMERFTDDTFCEACKS-TVGVDFKIKTVELRGKKIRLQIWDTAGQE 102
           + I++G  GVGKTSL+ +F    F     S TVG+ F  K V + G +++LQIWDTAGQE
Sbjct: 24  KTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDGVRVKLQIWDTAGQE 83

Query: 103 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 162
           RF S+T AYYR A+ ++L+YDIT K +FD++  W+  I +YA  D  ++L+GNK D  ++
Sbjct: 84  RFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSE 143

Query: 163 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 204
           R I  + GE  A++  G+ F E SAK   NV+  FL +  ++
Sbjct: 144 RVIRSEDGETLAREY-GVPFLETSAKTGMNVELAFLAIAKEL 184


>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
          Length = 213

 Score =  140 bits (353), Expect = 1e-33
 Identities = 72/166 (43%), Positives = 109/166 (65%), Gaps = 3/166 (1%)

Query: 41  FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-GKKIRLQIWDTA 99
           ++ ++I+IG   VGK+ L+ RFT+  F +    TVGVDF  + VE+  GK+I+LQIWDTA
Sbjct: 7   YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTA 66

Query: 100 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE-DAELLLVGNKLD 158
           GQERF SIT AYYR++ G +L++DIT + +F ++ +W++    +        +LVG+K D
Sbjct: 67  GQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCD 126

Query: 159 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 204
            +T R++TR + EK A    GM++ E SA+D  NV++ F  L  DI
Sbjct: 127 LDTQRQVTRHEAEKLAAAY-GMKYIETSARDAINVEKAFTDLTRDI 171


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,475,086
Number of Sequences: 37866
Number of extensions: 507554
Number of successful extensions: 5829
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 5203
Number of HSP's gapped (non-prelim): 453
length of query: 244
length of database: 18,247,518
effective HSP length: 99
effective length of query: 145
effective length of database: 14,498,784
effective search space: 2102323680
effective search space used: 2102323680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.