Search of human proteins with 170763491

Search of human proteins with 170763491

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|170763491 interferon, alpha 14 [Homo sapiens]
         (189 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|170763491 interferon, alpha 14 [Homo sapiens]                      378   e-105
gi|4504597 interferon, alpha 5 [Homo sapiens]                         330   6e-91
gi|4504589 interferon, alpha 10 [Homo sapiens]                        324   3e-89
gi|10835103 interferon, alpha 4 [Homo sapiens]                        321   3e-88
gi|11128015 interferon, alpha 6 [Homo sapiens]                        318   2e-87
gi|10880985 interferon, alpha 17 [Homo sapiens]                       317   3e-87
gi|4504593 interferon, alpha 16 [Homo sapiens]                        315   1e-86
gi|194394174 interferon, alpha 13 precursor [Homo sapiens]            314   3e-86
gi|13128950 interferon, alpha 1 [Homo sapiens]                        312   1e-85
gi|71143135 interferon, alpha 7 [Homo sapiens]                        312   1e-85
gi|11067751 interferon, alpha 2 [Homo sapiens]                        309   8e-85
gi|169791013 interferon, alpha 21 [Homo sapiens]                      309   8e-85
gi|42476083 interferon, alpha 8 [Homo sapiens]                        300   4e-82
gi|4504605 interferon, omega 1 [Homo sapiens]                         209   1e-54
gi|28882045 interferon, epsilon [Homo sapiens]                        110   9e-25
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]              100   1e-21
gi|112789564 interferon kappa precursor [Homo sapiens]                 89   2e-18
gi|68303635 mutS homolog 3 [Homo sapiens]                              30   1.2  

>gi|170763491 interferon, alpha 14 [Homo sapiens]
          Length = 189

 Score =  378 bits (971), Expect = e-105
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
Sbjct: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLRRKD 189
           LQKRLRRKD
Sbjct: 181 LQKRLRRKD 189


>gi|4504597 interferon, alpha 5 [Homo sapiens]
          Length = 189

 Score =  330 bits (845), Expect = 6e-91
 Identities = 160/189 (84%), Positives = 176/189 (93%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MALPF L+MALVVL+CKS CSLGC+L QTHSL+NRRTLM+MAQM RISPFSCLKDRHDF 
Sbjct: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQEEFDGNQFQKAQAISVLHEM+QQTFNLFSTK+SSA WDETLL+KFY EL+QQ+NDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           AC++QEVGVE+TPLMN DSIL V+KYFQRITLYL EKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180

Query: 181 LQKRLRRKD 189
           LQ+RLRRK+
Sbjct: 181 LQERLRRKE 189


>gi|4504589 interferon, alpha 10 [Homo sapiens]
          Length = 189

 Score =  324 bits (830), Expect = 3e-89
 Identities = 159/189 (84%), Positives = 177/189 (93%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MAL F+L+MA++VLS KS CSLGC+L QTHSL NRR L+L+ QM RISPFSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
            PQEEFDGNQFQKAQAISVLHEM+QQTFNLFST++SSAAW+++LLEKF  EL+QQ+NDLE
Sbjct: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMNEDSILAV+KYFQRITLYL+E+KYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLRRKD 189
           LQKRLRRKD
Sbjct: 181 LQKRLRRKD 189


>gi|10835103 interferon, alpha 4 [Homo sapiens]
          Length = 189

 Score =  321 bits (822), Expect = 3e-88
 Identities = 159/189 (84%), Positives = 177/189 (93%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MAL F+L+MA++VLS KS CSLGC+L QTHSL NRR L+L+AQM RIS FSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FP+EEFDG+QFQKAQAISVLHEM+QQTFNLFST++SSAAW+++LLEKF  EL+QQ+NDLE
Sbjct: 61  FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMNEDSILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLRRKD 189
           LQKRLRRKD
Sbjct: 181 LQKRLRRKD 189


>gi|11128015 interferon, alpha 6 [Homo sapiens]
          Length = 189

 Score =  318 bits (814), Expect = 2e-87
 Identities = 157/189 (83%), Positives = 173/189 (91%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MALPFAL+MALVVLSCKSSCSL C+L QTHSL +RRT+ML+AQMRRIS FSCLKDRHDF 
Sbjct: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQEEFDGNQFQKA+AISVLHE++QQTFNLFSTK+SS AWDE LL+K Y EL+QQ+NDLE
Sbjct: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACV+QEV V  TPLMNEDSILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180

Query: 181 LQKRLRRKD 189
           LQ+RLRRK+
Sbjct: 181 LQERLRRKE 189


>gi|10880985 interferon, alpha 17 [Homo sapiens]
          Length = 189

 Score =  317 bits (813), Expect = 3e-87
 Identities = 157/189 (83%), Positives = 175/189 (92%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MAL F+L+MA++VLS KS CSLGC+L QTHSL NRR L+L+AQM RISPFSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
            PQEEFDGNQFQK QAISVLHEM+QQTFNLFST++SSAAW+++LLEKF  EL+QQ+N+LE
Sbjct: 61  LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVG+EETPLMNEDSILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLRRKD 189
           LQK LRRKD
Sbjct: 181 LQKILRRKD 189


>gi|4504593 interferon, alpha 16 [Homo sapiens]
          Length = 189

 Score =  315 bits (807), Expect = 1e-86
 Identities = 158/189 (83%), Positives = 171/189 (90%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MAL F+L+MA++VLS KS CSLGC+L QTHSL NRR L+L+AQM RIS FSCLKDR+DF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQE FDGNQFQKAQAIS  HEM+QQTFNLFSTK+SSAAWDETLL+KFYIELFQQ+NDLE
Sbjct: 61  FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACV QEVGVEE  LMNEDSILAV+KYFQRITLYLM KKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQKRLRRKD 189
           LQK LRRKD
Sbjct: 181 LQKGLRRKD 189


>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
          Length = 190

 Score =  314 bits (804), Expect = 3e-86
 Identities = 156/189 (82%), Positives = 172/189 (91%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MA PFAL+MALVVLSCKSSCSLGC+L +THSL+NRRTLML+AQM RISP SCL DRHDF 
Sbjct: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQEEFDGNQFQKA AISVLHE++QQ FNLF+TK+SSAAWDE LL+KF  EL+QQ+NDLE
Sbjct: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACV+QE  V ETPLMN DSILAVKKYF+RITLYL EKKYSPCAWEVVRAEIMRSLS STN
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181

Query: 181 LQKRLRRKD 189
           LQ+RLRRK+
Sbjct: 182 LQERLRRKE 190


>gi|13128950 interferon, alpha 1 [Homo sapiens]
          Length = 189

 Score =  312 bits (800), Expect = 1e-85
 Identities = 155/189 (82%), Positives = 171/189 (90%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MA PFAL+M LVVLSCKSSCSLGC+L +THSL+NRRTLML+AQM RISP SCL DRHDF 
Sbjct: 1   MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQEEFDGNQFQKA AISVLHE++QQ FNLF+TK+SSAAWDE LL+KF  EL+QQ+NDLE
Sbjct: 61  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACV+QE  V ETPLMN DSILAVKKYF+RITLYL EKKYSPCAWEVVRAEIMRSLS STN
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180

Query: 181 LQKRLRRKD 189
           LQ+RLRRK+
Sbjct: 181 LQERLRRKE 189


>gi|71143135 interferon, alpha 7 [Homo sapiens]
          Length = 189

 Score =  312 bits (800), Expect = 1e-85
 Identities = 153/189 (80%), Positives = 173/189 (91%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MA  F+L+M ++VLS KS CSLGC+L QTHSL NRR L+L+AQM RISPFSCLKDRH+F 
Sbjct: 1   MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FP+EEFDG+QFQK QAISVLHEM+QQTFNLFST++SSAAW+++LLEKF  EL+QQ+NDLE
Sbjct: 61  FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMNED ILAV+KYFQRITLYLMEKKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQKRLRRKD 189
           L+K LRRKD
Sbjct: 181 LKKGLRRKD 189


>gi|11067751 interferon, alpha 2 [Homo sapiens]
          Length = 188

 Score =  309 bits (792), Expect = 8e-85
 Identities = 155/189 (82%), Positives = 171/189 (90%), Gaps = 1/189 (0%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MAL FAL++AL+VLSCKSSCS+GC+L QTHSL +RRTLML+AQMRRIS FSCLKDRHDF 
Sbjct: 1   MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQEEF GNQFQKA+ I VLHEM+QQ FNLFSTK+SSAAWDETLL+KFY EL+QQ+NDLE
Sbjct: 61  FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQ VGV ETPLM EDSILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRS S STN
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179

Query: 181 LQKRLRRKD 189
           LQ+ LR K+
Sbjct: 180 LQESLRSKE 188


>gi|169791013 interferon, alpha 21 [Homo sapiens]
          Length = 189

 Score =  309 bits (792), Expect = 8e-85
 Identities = 155/189 (82%), Positives = 170/189 (89%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MAL F+L+MA++VLS KS CSLGC+L QTHSL NRR L+L+AQM RISPFSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQEEFDGNQFQKAQAISVLHEM+QQTFNLFSTK+SSA W+++LLEKF  EL QQ+NDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMN DSILAVKKYFQRITLYL EKKYSPCAWEVVRAEIMRS S S  
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180

Query: 181 LQKRLRRKD 189
            Q+RLRRK+
Sbjct: 181 FQERLRRKE 189


>gi|42476083 interferon, alpha 8 [Homo sapiens]
          Length = 189

 Score =  300 bits (769), Expect = 4e-82
 Identities = 153/189 (80%), Positives = 169/189 (89%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MAL F L++ALVVLS KS  SLGC+L QTHSL NRR L+L+AQMRRISPFSCLKDRHDFE
Sbjct: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQEEFD  QFQKAQAISVLHEM+QQTFNLFSTK+SSAA DETLL++FYIEL QQ+NDLE
Sbjct: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
           +CV+QEVGV E+PLM EDSILAV+KYFQRITLYL EKKYS CAWEVVRAEIMRS S S N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180

Query: 181 LQKRLRRKD 189
           LQKRL+ K+
Sbjct: 181 LQKRLKSKE 189


>gi|4504605 interferon, omega 1 [Homo sapiens]
          Length = 195

 Score =  209 bits (532), Expect = 1e-54
 Identities = 108/189 (57%), Positives = 134/189 (70%)

Query: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
           MAL F L+ ALV+ S     SLGC+L Q H L +R TL+L+ QMRRISPF CLKDR DF 
Sbjct: 1   MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60

Query: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
           FPQE   G+Q QKA  +SVLHEM+QQ F+LF T+ SSAAW+ TLL++ +  L QQ+  LE
Sbjct: 61  FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
            C++Q VG  E+        L +++YFQ I +YL EKKYS CAWEVVR EIM+SL  STN
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180

Query: 181 LQKRLRRKD 189
           +Q+RLR KD
Sbjct: 181 MQERLRSKD 189


>gi|28882045 interferon, epsilon [Homo sapiens]
          Length = 208

 Score =  110 bits (274), Expect = 9e-25
 Identities = 59/155 (38%), Positives = 90/155 (58%)

Query: 34  NRRTLMLMAQMRRISPFSCLKDRHDFEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFST 93
           N+ +L L+ +++ +S   CL  R +F  PQ+     Q+QK   +++LHEM+QQ F+LF  
Sbjct: 35  NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94

Query: 94  KNSSAAWDETLLEKFYIELFQQMNDLEACVIQEVGVEETPLMNEDSILAVKKYFQRITLY 153
             S   W+E   EKF I+L QQ+  LEA +  E       L +++  L VK YF+RI  Y
Sbjct: 95  NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154

Query: 154 LMEKKYSPCAWEVVRAEIMRSLSFSTNLQKRLRRK 188
           L  + YS CAW +V+ EI R L F  +L ++L ++
Sbjct: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189


>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
          Length = 187

 Score =  100 bits (248), Expect = 1e-21
 Identities = 51/135 (37%), Positives = 78/135 (57%)

Query: 52  CLKDRHDFEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIE 111
           CLKDR +F+ P+E     QFQK  A   ++EM+Q  F +F   +SS  W+ET++E     
Sbjct: 52  CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111

Query: 112 LFQQMNDLEACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEI 171
           ++ Q+N L+  + +++  E+       S L +K+Y+ RI  YL  K+YS CAW +VR EI
Sbjct: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171

Query: 172 MRSLSFSTNLQKRLR 186
           +R+  F   L   LR
Sbjct: 172 LRNFYFINRLTGYLR 186


>gi|112789564 interferon kappa precursor [Homo sapiens]
          Length = 207

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 62/182 (34%), Positives = 85/182 (46%), Gaps = 15/182 (8%)

Query: 21  SLGCNLSQTHSLN-NRRTLMLMAQMRRISPFSCLKDRHDFEFPQEEFDGNQFQKAQAISV 79
           SL CNL   H      + L  ++ M    P  CL++   FE PQE     Q  K      
Sbjct: 27  SLDCNLLNVHLRRVTWQNLRHLSSMSNSFPVECLRENIAFELPQEFLQYTQPMKRDIKKA 86

Query: 80  LHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLEACVIQEVGV-EETPLMNED 138
            +EM  Q FN+FS +++   W E  L++  I L QQ   L  C+ ++    E+   M E+
Sbjct: 87  FYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEYLNQCLEEDKNENEDMKEMKEN 145

Query: 139 ------------SILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTNLQKRLR 186
                       S L +++YF RI  +L EKKYS CAWE+VR EI R L +        R
Sbjct: 146 EMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEIVRVEIRRCLYYFYKFTALFR 205

Query: 187 RK 188
           RK
Sbjct: 206 RK 207


>gi|68303635 mutS homolog 3 [Homo sapiens]
          Length = 1137

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 66  FDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLEACV 123
           FD +QF  +   +  HE +Q+T +  + K S + +  T LE  YIE+ QQ  D   CV
Sbjct: 198 FDLSQFGSS---NTSHENLQKTASKSANKRSKSIY--TPLELQYIEMKQQHKDAVLCV 250


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,201,395
Number of Sequences: 37866
Number of extensions: 231927
Number of successful extensions: 630
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 18
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.