Search of human proteins with 169164045

Search of human proteins with 169164045

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169164045 PREDICTED: similar to hCG1782458 [Homo sapiens]
         (399 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169164045 PREDICTED: similar to hCG1782458 [Homo sapiens]          826   0.0  
gi|169163256 PREDICTED: similar to hCG1782458 [Homo sapiens]          824   0.0  
gi|94538357 18 kDa antrum mucosa protein [Homo sapiens]                69   6e-12
gi|59858535 trefoil factor interactions(z) 1 [Homo sapiens]            40   0.004
gi|126091130 Gab3 protein isoform 1 [Homo sapiens]                     31   1.7  
gi|18079323 Gab3 protein isoform 2 [Homo sapiens]                      31   1.7  
gi|120952851 strumpellin [Homo sapiens]                                30   2.9  
gi|153946421 endoplasmic reticulum to nucleus signalling 1 [Homo...    30   3.8  

>gi|169164045 PREDICTED: similar to hCG1782458 [Homo sapiens]
          Length = 399

 Score =  826 bits (2134), Expect = 0.0
 Identities = 399/399 (100%), Positives = 399/399 (100%)

Query: 1   MVRATGQHPDEFCCFLTLRQPCPIIDQARKLSYCAHTVHLFPYSKEGKQDELCEECTECC 60
           MVRATGQHPDEFCCFLTLRQPCPIIDQARKLSYCAHTVHLFPYSKEGKQDELCEECTECC
Sbjct: 1   MVRATGQHPDEFCCFLTLRQPCPIIDQARKLSYCAHTVHLFPYSKEGKQDELCEECTECC 60

Query: 61  GNELSNSKKSQGLPGLTRKRADTQQVSRNTKKGLRVTFFAPTPTLWPLCEWHATGIVASS 120
           GNELSNSKKSQGLPGLTRKRADTQQVSRNTKKGLRVTFFAPTPTLWPLCEWHATGIVASS
Sbjct: 61  GNELSNSKKSQGLPGLTRKRADTQQVSRNTKKGLRVTFFAPTPTLWPLCEWHATGIVASS 120

Query: 121 ILGVFVLTPSLAMMNIRFNHPLYGSFGTQIIHIGAFQGMALLVAKVFNKMACVLARMDKA 180
           ILGVFVLTPSLAMMNIRFNHPLYGSFGTQIIHIGAFQGMALLVAKVFNKMACVLARMDKA
Sbjct: 121 ILGVFVLTPSLAMMNIRFNHPLYGSFGTQIIHIGAFQGMALLVAKVFNKMACVLARMDKA 180

Query: 181 VFPSLDDISKALDKQAFKYYPSTRGLTYTVLPSWVKNLAQYGKPIKNMCRDDPTYFAQQQ 240
           VFPSLDDISKALDKQAFKYYPSTRGLTYTVLPSWVKNLAQYGKPIKNMCRDDPTYFAQQQ
Sbjct: 181 VFPSLDDISKALDKQAFKYYPSTRGLTYTVLPSWVKNLAQYGKPIKNMCRDDPTYFAQQQ 240

Query: 241 KEGTALAIDSNSCFEIQLLSFMGLFICDTRFPAGTGFLPEMPGSRPAALPMCIITLGCHW 300
           KEGTALAIDSNSCFEIQLLSFMGLFICDTRFPAGTGFLPEMPGSRPAALPMCIITLGCHW
Sbjct: 241 KEGTALAIDSNSCFEIQLLSFMGLFICDTRFPAGTGFLPEMPGSRPAALPMCIITLGCHW 300

Query: 301 LGCDSSLLRKSQHTPLDLRGLVKSREEPAVSKLRTVGMGELARQPQEAAAQCSFSGYLLT 360
           LGCDSSLLRKSQHTPLDLRGLVKSREEPAVSKLRTVGMGELARQPQEAAAQCSFSGYLLT
Sbjct: 301 LGCDSSLLRKSQHTPLDLRGLVKSREEPAVSKLRTVGMGELARQPQEAAAQCSFSGYLLT 360

Query: 361 LCSQFPFQEIRSSAPYPAWNVLLLLVLLSAWGGETHPIT 399
           LCSQFPFQEIRSSAPYPAWNVLLLLVLLSAWGGETHPIT
Sbjct: 361 LCSQFPFQEIRSSAPYPAWNVLLLLVLLSAWGGETHPIT 399


>gi|169163256 PREDICTED: similar to hCG1782458 [Homo sapiens]
          Length = 399

 Score =  824 bits (2128), Expect = 0.0
 Identities = 398/399 (99%), Positives = 398/399 (99%)

Query: 1   MVRATGQHPDEFCCFLTLRQPCPIIDQARKLSYCAHTVHLFPYSKEGKQDELCEECTECC 60
           MVRATGQHPDEFCCFLTLRQPCPIIDQARKLSYCAHTVHLFPYSKEGKQDELCEECTECC
Sbjct: 1   MVRATGQHPDEFCCFLTLRQPCPIIDQARKLSYCAHTVHLFPYSKEGKQDELCEECTECC 60

Query: 61  GNELSNSKKSQGLPGLTRKRADTQQVSRNTKKGLRVTFFAPTPTLWPLCEWHATGIVASS 120
           GNELSNSKKSQGLPGLTRKRADTQQVSRNTKKGLRVTF APTPTLWPLCEWHATGIVASS
Sbjct: 61  GNELSNSKKSQGLPGLTRKRADTQQVSRNTKKGLRVTFLAPTPTLWPLCEWHATGIVASS 120

Query: 121 ILGVFVLTPSLAMMNIRFNHPLYGSFGTQIIHIGAFQGMALLVAKVFNKMACVLARMDKA 180
           ILGVFVLTPSLAMMNIRFNHPLYGSFGTQIIHIGAFQGMALLVAKVFNKMACVLARMDKA
Sbjct: 121 ILGVFVLTPSLAMMNIRFNHPLYGSFGTQIIHIGAFQGMALLVAKVFNKMACVLARMDKA 180

Query: 181 VFPSLDDISKALDKQAFKYYPSTRGLTYTVLPSWVKNLAQYGKPIKNMCRDDPTYFAQQQ 240
           VFPSLDDISKALDKQAFKYYPSTRGLTYTVLPSWVKNLAQYGKPIKNMCRDDPTYFAQQQ
Sbjct: 181 VFPSLDDISKALDKQAFKYYPSTRGLTYTVLPSWVKNLAQYGKPIKNMCRDDPTYFAQQQ 240

Query: 241 KEGTALAIDSNSCFEIQLLSFMGLFICDTRFPAGTGFLPEMPGSRPAALPMCIITLGCHW 300
           KEGTALAIDSNSCFEIQLLSFMGLFICDTRFPAGTGFLPEMPGSRPAALPMCIITLGCHW
Sbjct: 241 KEGTALAIDSNSCFEIQLLSFMGLFICDTRFPAGTGFLPEMPGSRPAALPMCIITLGCHW 300

Query: 301 LGCDSSLLRKSQHTPLDLRGLVKSREEPAVSKLRTVGMGELARQPQEAAAQCSFSGYLLT 360
           LGCDSSLLRKSQHTPLDLRGLVKSREEPAVSKLRTVGMGELARQPQEAAAQCSFSGYLLT
Sbjct: 301 LGCDSSLLRKSQHTPLDLRGLVKSREEPAVSKLRTVGMGELARQPQEAAAQCSFSGYLLT 360

Query: 361 LCSQFPFQEIRSSAPYPAWNVLLLLVLLSAWGGETHPIT 399
           LCSQFPFQEIRSSAPYPAWNVLLLLVLLSAWGGETHPIT
Sbjct: 361 LCSQFPFQEIRSSAPYPAWNVLLLLVLLSAWGGETHPIT 399


>gi|94538357 18 kDa antrum mucosa protein [Homo sapiens]
          Length = 199

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 27/177 (15%)

Query: 116 IVASSILGVFVLTPSLAMMNIRFNHPLYGS-FGTQIIHIGAFQGMA-------------- 160
           IV + +LGVF L P+LA  NI  N     +  G Q + +     +A              
Sbjct: 19  IVFAGLLGVF-LAPALANYNINVNDDNNNAGSGQQSVSVNNEHNVANVDNNNGWDSWNSI 77

Query: 161 ------LLVAKVFNKMACVLARMDKAVFPSLDDISKALDKQAFKYY----PSTRGLTYTV 210
                     ++F K  C++ +M+K V PS+  +   + ++  +      P  +GL Y+V
Sbjct: 78  WDYGNGFAATRLFQKKTCIVHKMNKEVMPSIQSLDALVKEKKLQGKGPGGPPPKGLMYSV 137

Query: 211 LPSWVKNLAQYGKPIKNMCRDDPTYFAQQQKEGTALAIDSNSCFEIQLLSFMGLFIC 267
            P+ V +L+++GK I NMCR  PTY A++ +E  +L   S +C+   +L  + +  C
Sbjct: 138 NPNKVDDLSKFGKNIANMCRGIPTYMAEEMQE-ASLFFYSGTCYTTSVLWIVDISFC 193


>gi|59858535 trefoil factor interactions(z) 1 [Homo sapiens]
          Length = 184

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 7/111 (6%)

Query: 162 LVAKVFNKMACVLARMDKAVFPSLDDISKAL-DKQAFKYYPSTR--GLTYTVLPSWVKNL 218
           + ++V ++ AC + +MD    P L+++   + +KQA     S++   + Y  L S +K++
Sbjct: 71  IASRVLSRRACFILKMDHQNIPPLNNLQWYIYEKQALDNMFSSKYTWVKYNPLESLIKDV 130

Query: 219 AQY--GKPIKNMCRDDPTYFAQQQKEGTALAIDSNSCFEIQLLSFMGLFIC 267
             +  G PI+ +C+  P Y  +  +      + +  C +  LL  +G+ IC
Sbjct: 131 DWFLLGSPIEKLCKHIPLYKGEVVE--NTHNVGAGGCAKAGLLGILGISIC 179


>gi|126091130 Gab3 protein isoform 1 [Homo sapiens]
          Length = 587

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 277 FLPEMPGSRPAALPMCIITLGCHWLGCDSSLLRKSQHTPLDLRGLVKSREEPAVSKLRTV 336
           ++P   GS  + LP     L    +  D    RKS+  PLDLR L   RE  ++++ RTV
Sbjct: 415 YIPMNSGSISSPLPELPANLEPPPVNRDLKPQRKSRPPPLDLRNLSIIREHASLTRTRTV 474


>gi|18079323 Gab3 protein isoform 2 [Homo sapiens]
          Length = 586

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 277 FLPEMPGSRPAALPMCIITLGCHWLGCDSSLLRKSQHTPLDLRGLVKSREEPAVSKLRTV 336
           ++P   GS  + LP     L    +  D    RKS+  PLDLR L   RE  ++++ RTV
Sbjct: 414 YIPMNSGSISSPLPELPANLEPPPVNRDLKPQRKSRPPPLDLRNLSIIREHASLTRTRTV 473


>gi|120952851 strumpellin [Homo sapiens]
          Length = 1159

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 198  KYYPSTRGLTYTVLPSWVKNLAQ-----YGKPIKNMCRD--DPTYFAQQQKEGTALAIDS 250
            K Y +T+ L Y  + +++  +AQ     Y K +  +CR   DP  +         L    
Sbjct: 1028 KIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDWPPLVLGLLTLLKQF 1087

Query: 251  NSCFEIQLLSFMGLFICDTRFPAGTGFLPEMPGSRPAAL 289
            +S +  Q L+ +G FIC T     +  +PE+P     AL
Sbjct: 1088 HSRYTEQFLALIGQFICSTVEQCTSQKIPEIPADVVGAL 1126


>gi|153946421 endoplasmic reticulum to nucleus signalling 1 [Homo
           sapiens]
          Length = 977

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 2   VRAT-GQHPDEFCCFLTLRQPCPIIDQARKLSYCAHTVHLFPY 43
           VR T G  PD+F C+ T R P  +    R +  C+H     PY
Sbjct: 918 VRETLGSLPDDFVCYFTSRFPHLLAHTYRAMELCSHERLFQPY 960


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,927,389
Number of Sequences: 37866
Number of extensions: 713778
Number of successful extensions: 1450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1445
Number of HSP's gapped (non-prelim): 8
length of query: 399
length of database: 18,247,518
effective HSP length: 104
effective length of query: 295
effective length of database: 14,309,454
effective search space: 4221288930
effective search space used: 4221288930
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.