Search of human proteins with 166795303

Search of human proteins with 166795303

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|166795303 mitochondrial translational release factor 1-like
isoform a [Homo sapiens]
         (380 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|166795303 mitochondrial translational release factor 1-like i...   755   0.0  
gi|166795305 mitochondrial translational release factor 1-like i...   538   e-153
gi|34577120 mitochondrial translational release factor 1 [Homo s...   323   2e-88
gi|219879802 hypothetical protein LOC91574 [Homo sapiens]              47   2e-05
gi|22748627 hypothetical protein LOC91574 [Homo sapiens]               47   2e-05
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap...    40   0.005
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]            38   0.013
gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo sap...    36   0.066
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub...    35   0.11 
gi|154937324 hypothetical protein LOC440295 [Homo sapiens]             35   0.11 
gi|31982906 cingulin-like 1 [Homo sapiens]                             35   0.15 
gi|224831251 optic atrophy 1 isoform 7 [Homo sapiens]                  34   0.25 
gi|157785668 coiled-coil domain containing 39 [Homo sapiens]           33   0.33 
gi|239745087 PREDICTED: similar to Golgin subfamily A member 8-l...    33   0.43 
gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-l...    33   0.43 
gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-l...    33   0.43 
gi|239745081 PREDICTED: similar to Golgin subfamily A member 8-l...    33   0.43 
gi|55770834 centromere protein F [Homo sapiens]                        33   0.43 
gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo...    33   0.56 
gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo...    33   0.56 
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    33   0.56 
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    33   0.56 
gi|239756284 PREDICTED: similar to GOLGA8B protein, partial [Hom...    32   0.73 
gi|25777704 zinc finger 398 isoform a [Homo sapiens]                   32   0.73 
gi|124249396 coiled-coil domain containing 30 [Homo sapiens]           32   0.95 
gi|7656888 angiopoietin-like 3 precursor [Homo sapiens]                32   0.95 
gi|40316926 clusterin-like 1 (retinal) [Homo sapiens]                  32   0.95 
gi|7657490 clusterin-like 1 (retinal) [Homo sapiens]                   32   0.95 
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap...    32   1.2  
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi...    32   1.2  

>gi|166795303 mitochondrial translational release factor 1-like
           isoform a [Homo sapiens]
          Length = 380

 Score =  755 bits (1950), Expect = 0.0
 Identities = 380/380 (100%), Positives = 380/380 (100%)

Query: 1   MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR 60
           MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR
Sbjct: 1   MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR 60

Query: 61  RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP 120
           RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP
Sbjct: 61  RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP 120

Query: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180
           SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA
Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180

Query: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240
           SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR
Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240

Query: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 300
           IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL
Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 300

Query: 301 EEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELV 360
           EEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELV
Sbjct: 301 EEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELV 360

Query: 361 QSLKEYADYESLVEIISQKV 380
           QSLKEYADYESLVEIISQKV
Sbjct: 361 QSLKEYADYESLVEIISQKV 380


>gi|166795305 mitochondrial translational release factor 1-like
           isoform b [Homo sapiens]
          Length = 271

 Score =  538 bits (1385), Expect = e-153
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR 60
           MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR
Sbjct: 1   MRSRVLWGAARWLWPRRAVGPARRPLSSGSPPLEELFTRGGPLRTFLERQAGSEAHLKVR 60

Query: 61  RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP 120
           RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP
Sbjct: 61  RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILLLVP 120

Query: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180
           SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA
Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180

Query: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240
           SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR
Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240

Query: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPT 268
           IDTKRASGAGGQHVNTTDSAVRIVHLPT
Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPT 268


>gi|34577120 mitochondrial translational release factor 1 [Homo
           sapiens]
          Length = 445

 Score =  323 bits (827), Expect = 2e-88
 Identities = 159/324 (49%), Positives = 229/324 (70%), Gaps = 9/324 (2%)

Query: 64  LLAVIKLLNEKERELRETEHLLHDENED----LRKLAENEITLCQKEITQLKHQIILLLV 119
           L A+ + + E E+ + E E +    N+     L++LA  E     ++I  L +++   LV
Sbjct: 116 LAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLV 175

Query: 120 PSEETDENDLILEVTAG--VGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGL 177
           P E+ D+ND+ILEVTAG   GG     FT EIFDMYQ Y+ +K W FE L Y P++ GGL
Sbjct: 176 PKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGL 235

Query: 178 RHASASIGGSEAYRHMKFEGGVHRVQRVPK---TEKQGRVHTSTMTVAILPQPTEINLVI 234
            HA+A I G   Y+H+K+EGG+HRVQR+P+   + +  R+HT TM+V +LPQP E+++ +
Sbjct: 236 HHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKL 295

Query: 235 NPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAK 294
           +PKDLRIDT RA GAGGQHVN TDSAVR+VH+PTG+V ECQQERSQ+KNKE+A   LRA+
Sbjct: 296 DPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRAR 355

Query: 295 LYSMHLEEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDY 354
           LY   +E++  ++Q+ARK+Q+G++ +SE+IRTYNF Q+RV+DHRI   + D++ F+ G  
Sbjct: 356 LYQQIIEKDKRQQQSARKLQVGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGK 415

Query: 355 LLDELVQSLKEYADYESLVEIISQ 378
            LD+L+Q L + AD E++ E++ +
Sbjct: 416 GLDQLIQRLLQSADEEAIAELLDE 439


>gi|219879802 hypothetical protein LOC91574 [Homo sapiens]
          Length = 166

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 232 LVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKL 291
           L ++  +L     +  G GGQ  N T + V + H+P+G+V +C Q RS  +N++LA   L
Sbjct: 53  LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112

Query: 292 RAKLYSMHLEEEI----NKRQNARKIQIGSKGRSEKI 324
           + K+   +  E       KR+ A+K Q   K   E +
Sbjct: 113 QEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETL 149


>gi|22748627 hypothetical protein LOC91574 [Homo sapiens]
          Length = 166

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 232 LVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKL 291
           L ++  +L     +  G GGQ  N T + V + H+P+G+V +C Q RS  +N++LA   L
Sbjct: 53  LSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKIL 112

Query: 292 RAKLYSMHLEEEI----NKRQNARKIQIGSKGRSEKI 324
           + K+   +  E       KR+ A+K Q   K   E +
Sbjct: 113 QEKVDVFYNGENSPVHKEKREAAKKKQERKKRAKETL 149


>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 432

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 14/118 (11%)

Query: 28  SGSPPLEELFTRGGPLRTFLERQAGSEAHLKVRRPELLAVI-----KLLNEKERELRETE 82
           +G   +E+L      LR  LE   G +   +V   ++L+++     + L E+E  LRE E
Sbjct: 154 AGPSKVEQLQDETNHLRKELE-SVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQE 212

Query: 83  HLLHDENEDL----RKLAENEITLCQKE----ITQLKHQIILLLVPSEETDENDLILE 132
             LH++ E L     +L E E  LC++E      +L  ++  LL      +E + +LE
Sbjct: 213 ERLHEQEERLCEQEERLCEQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQERLLE 270


>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 523

 Score = 38.1 bits (87), Expect = 0.013
 Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 43  LRTFLERQAGSEAHLKVRRPELLAVIKLLNEKERELRETEHLLHDENEDL----RKLAEN 98
           LR   ER    E  L+     L    + L E+E  LRE E  LH++ E L     +L E 
Sbjct: 236 LREQEERLCEQEERLREHEERLCEQEERLCEQEERLREQEERLHEQEERLCEQEERLREQ 295

Query: 99  EITLCQKEITQLKHQIILLLVPSEETDENDLILEVTAGVGGQEAML 144
           E  LC++E  +L+ Q   L    E   E +  L     + GQE +L
Sbjct: 296 EERLCEQE-ERLREQEERLCEQEERLREQEERLCEQEKLPGQERLL 340



 Score = 34.3 bits (77), Expect = 0.19
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 43  LRTFLERQAGSEAHLKVRRPELLAVIKLLNEKERELRETEHLLHDENEDLR----KLAEN 98
           LR   ER    E  L+ +   L    + L E+E  LRE E  L ++ E LR    +L E 
Sbjct: 201 LREQEERLREQEERLREQEERLCEQEERLREQEERLREQEERLCEQEERLREHEERLCEQ 260

Query: 99  EITLCQKE 106
           E  LC++E
Sbjct: 261 EERLCEQE 268



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 48  ERQAGSEAHLKVRRPELLAVIKLLNEKERELRETEHLLHDENEDL----RKLAENEITLC 103
           ER    E  L+ +   L    + L E+E  LRE E  L ++ E L     +L E+E  LC
Sbjct: 199 ERLREQEERLREQEERLREQEERLCEQEERLREQEERLREQEERLCEQEERLREHEERLC 258

Query: 104 QKE 106
           ++E
Sbjct: 259 EQE 261



 Score = 31.2 bits (69), Expect = 1.6
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 7/103 (6%)

Query: 34  EELFTRGGPLRTFLERQAGSEAHLKVRRPELLAVIKLLNEKERELRETEHLLHDENEDLR 93
           E L  +   LR   ER    E  L  +   L    + L E+E  LRE E  L ++ E LR
Sbjct: 262 ERLCEQEERLREQEERLHEQEERLCEQEERLREQEERLCEQEERLREQEERLCEQEERLR 321

Query: 94  KLAENEITLCQKE----ITQLKHQIILLLVPSEETDENDLILE 132
              E E  LC++E      +L  ++  LL      +E + +LE
Sbjct: 322 ---EQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQERLLE 361


>gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 479

 Score = 35.8 bits (81), Expect = 0.066
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 9/84 (10%)

Query: 28  SGSPPLEELFTRGGPLRTFLERQAGSEAHLKVRRPELLAVIKLLNEKERE-LRETEHLLH 86
           +G   +E+L      LR  LE   G +   +V   ++L+   LLN ++ E LRE E  LH
Sbjct: 154 AGPSKVEQLQDETNHLRKELE-SVGRQLQAEVENNQMLS---LLNRRQEERLREQEERLH 209

Query: 87  DENEDL----RKLAENEITLCQKE 106
           ++ E L     +L E E  LC++E
Sbjct: 210 EQEERLHEQEERLCEQEERLCEQE 233



 Score = 35.8 bits (81), Expect = 0.066
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 48  ERQAGSEAHLKVRRPELLAVIKLLNEKERELRETEHLLHDENEDL----RKLAENEITLC 103
           ER    E  L  +   L    + L E+E  LRE E  LH++ E L     +L E E  LC
Sbjct: 213 ERLHEQEERLCEQEERLCEQEERLREQEERLREQEERLHEQEERLCEQEERLCEQEERLC 272

Query: 104 QKE----ITQLKHQIILLLVPSEETDENDLILE 132
           ++E      +L  ++  LL      +E + +LE
Sbjct: 273 EQEKLPGQERLLEEVEKLLEQERRQEEQERLLE 305



 Score = 33.1 bits (74), Expect = 0.43
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 43  LRTFLERQAGSEAHLKVRRPELLAVIKLLNEKERELRETEHLLHDENEDL----RKLAEN 98
           LR   ER    E  L  +   L    + L E+E  LRE E  L ++ E L     +L E 
Sbjct: 201 LREQEERLHEQEERLHEQEERLCEQEERLCEQEERLREQEERLREQEERLHEQEERLCEQ 260

Query: 99  EITLCQKEITQLKHQIILLLVPSEE--TDENDLILEVTAGVGGQEAMLFTSEIFDMYQQY 156
           E  LC++E    + +     +P +E   +E + +LE       QE +L    + D  ++ 
Sbjct: 261 EERLCEQEERLCEQE----KLPGQERLLEEVEKLLEQERRQEEQERLLERERLLDEVEEL 316

Query: 157 AAFKR--------WHFETL 167
              +R        W  ETL
Sbjct: 317 LEQERLRQQDERLWQQETL 335


>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
           subfamily a-like [Homo sapiens]
          Length = 432

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 14/118 (11%)

Query: 28  SGSPPLEELFTRGGPLRTFLERQAGSEAHLKVRRPELLAVI-----KLLNEKERELRETE 82
           +G   +E+L      LR  LE   G +   +V   ++L+++     + L E+E  LRE E
Sbjct: 154 AGPSKVEQLQDETNHLRKELE-SVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQE 212

Query: 83  HLLHDENEDL----RKLAENEITLCQKE----ITQLKHQIILLLVPSEETDENDLILE 132
             L ++ E L     +L E E  LC++E      +L  ++  LL      +E + +LE
Sbjct: 213 ERLCEQEERLCEQEERLREQEERLCEQEKLPGQERLLEEVEKLLKQERRQEEQERLLE 270


>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
          Length = 432

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 14/118 (11%)

Query: 28  SGSPPLEELFTRGGPLRTFLERQAGSEAHLKVRRPELLAVI-----KLLNEKERELRETE 82
           +G   +E+L      LR  LE   G +   +V   ++L+++     + L E+E  LRE E
Sbjct: 154 AGPSKVEQLQDETNHLRKELE-SVGRQLQAEVENNQMLSLLNRRQEERLREQEERLREQE 212

Query: 83  HLLHDENEDL----RKLAENEITLCQKE----ITQLKHQIILLLVPSEETDENDLILE 132
             L ++ E L     +L E E  LC++E      +L  ++  LL      +E + +LE
Sbjct: 213 ERLCEQEERLCEQEERLREQEERLCEQEKLPGQERLLEEVEKLLKQERRQEEQERLLE 270


>gi|31982906 cingulin-like 1 [Homo sapiens]
          Length = 1302

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 58/283 (20%), Positives = 107/283 (37%), Gaps = 26/283 (9%)

Query: 45  TFLERQAGSEAHLKVRRPELLAVIKLLNEKERELRETEHLL---HDENEDLRKLAENEIT 101
           T  +R   SE  L+    EL  V     + + E+R+ +  L   HDE +  ++  + E  
Sbjct: 667 TLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKG 726

Query: 102 LCQKEITQLKHQIILLLVPSEETDE----NDLILEVTAGVGGQEAMLFTSEIFDMYQQYA 157
              +E+ Q K  +  LL+  EE ++     +  L    G   +E      E+  + +QY 
Sbjct: 727 ALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYD 786

Query: 158 AFKRWHFETLEYFPSELGGLRHASASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTS 217
           A  +   E++E     +  L   S +    +A   M+      ++ +    + QGR    
Sbjct: 787 AELQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRV-----KLLQEENEKLQGRSEEL 841

Query: 218 TMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQE 277
              VA L +  E        DL+ D  +A     ++          +        E    
Sbjct: 842 ERRVAQLQRQIE--------DLKGDEAKAKETLKKYEGEIRQLEEALVHARKEEKEAVSA 893

Query: 278 RSQLKNK------ELAMTKLRAKLYSMHLEEEINKRQNARKIQ 314
           R  L+N+       L+ T    K  S  L+EE  +++  R+++
Sbjct: 894 RRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLK 936


>gi|224831251 optic atrophy 1 isoform 7 [Homo sapiens]
          Length = 997

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 33  LEELFTRGGPLRT-FLERQAGSEAHLKVRRP---ELLAVIKLLNEKERELRETEHLLHDE 88
           L++ FT G P  T F     GSE+    R+    EL+ + + + E E E R         
Sbjct: 179 LKDFFTSGSPEETAFRATDRGSESDKHFRKGLLGELILLQQQIQEHEEEARRAAGQYSTS 238

Query: 89  N-EDLRKLAENE-ITLCQKEI--TQLKHQIILLLVPSEETDENDLILE 132
             +  RK+++ E I   Q+E+  TQLK+Q IL  +  E  +   L+L+
Sbjct: 239 YAQQKRKVSDKEKIDQLQEELLHTQLKYQRILERLEKENKELRKLVLQ 286


>gi|157785668 coiled-coil domain containing 39 [Homo sapiens]
          Length = 941

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 11/132 (8%)

Query: 43  LRTFLERQAGSEAHLKVRRPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITL 102
           LR + ER     +H K  + EL     L   +ERE    EH         + +A+ E+  
Sbjct: 45  LREYEERINSMTSHFKNVKQELSITQSLCKARERETESEEH--------FKAIAQRELGR 96

Query: 103 CQKEITQLKHQIILLLVPSEETDENDLILEVTAGVGGQEA-MLFTSEIFDMYQQYAAFKR 161
            + EI +L++++  +L   +++D+ + I + T  + G +  M +  +  + + + +A K 
Sbjct: 97  VKDEIQRLENEMASIL--EKKSDKENGIFKATQKLDGLKCQMNWDQQALEAWLEESAHKD 154

Query: 162 WHFETLEYFPSE 173
               TL+ +  +
Sbjct: 155 SDALTLQKYAQQ 166


>gi|239745087 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 1 isoform 1 [Homo sapiens]
          Length = 547

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 12/79 (15%)

Query: 43  LRTFLERQAGS-EAHLKVRRPELLAVIKLLNEKERE-LRETEHLLHDENEDLRKLAE--- 97
           LR  LER AG+ +A ++  +      I LLNE ++E LRE +  L ++ E L++LAE   
Sbjct: 324 LRKELERVAGALQAQVEYNQR-----ISLLNEGQKERLREQQERLPEQEERLQQLAEPQN 378

Query: 98  --NEITLCQKEITQLKHQI 114
              E+    K + QL+ Q+
Sbjct: 379 SFKELNNENKSVLQLEQQV 397


>gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 1 isoform 3 [Homo sapiens]
          Length = 601

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 12/79 (15%)

Query: 43  LRTFLERQAGS-EAHLKVRRPELLAVIKLLNEKERE-LRETEHLLHDENEDLRKLAE--- 97
           LR  LER AG+ +A ++  +      I LLNE ++E LRE +  L ++ E L++LAE   
Sbjct: 315 LRKELERVAGALQAQVEYNQR-----ISLLNEGQKERLREQQERLPEQEERLQQLAEPQN 369

Query: 98  --NEITLCQKEITQLKHQI 114
              E+    K + QL+ Q+
Sbjct: 370 SFKELNNENKSVLQLEQQV 388


>gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 1 isoform 4 [Homo sapiens]
          Length = 590

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 12/79 (15%)

Query: 43  LRTFLERQAGS-EAHLKVRRPELLAVIKLLNEKERE-LRETEHLLHDENEDLRKLAE--- 97
           LR  LER AG+ +A ++  +      I LLNE ++E LRE +  L ++ E L++LAE   
Sbjct: 303 LRKELERVAGALQAQVEYNQR-----ISLLNEGQKERLREQQERLPEQEERLQQLAEPQN 357

Query: 98  --NEITLCQKEITQLKHQI 114
              E+    K + QL+ Q+
Sbjct: 358 SFKELNNENKSVLQLEQQV 376


>gi|239745081 PREDICTED: similar to Golgin subfamily A member 8-like
           protein 1 isoform 2 [Homo sapiens]
          Length = 629

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 12/79 (15%)

Query: 43  LRTFLERQAGS-EAHLKVRRPELLAVIKLLNEKERE-LRETEHLLHDENEDLRKLAE--- 97
           LR  LER AG+ +A ++  +      I LLNE ++E LRE +  L ++ E L++LAE   
Sbjct: 315 LRKELERVAGALQAQVEYNQR-----ISLLNEGQKERLREQQERLPEQEERLQQLAEPQN 369

Query: 98  --NEITLCQKEITQLKHQI 114
              E+    K + QL+ Q+
Sbjct: 370 SFKELNNENKSVLQLEQQV 388


>gi|55770834 centromere protein F [Homo sapiens]
          Length = 3114

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 25/122 (20%)

Query: 50   QAGSEAHLKVRRPELLAV------IKLLNEKE-------RELRETEHLLHDENEDLRKLA 96
            Q  + AH  V    L A+      ++LLN+K        +EL+++ HLL D  ++L+ L+
Sbjct: 889  QEDTSAHQNVVAETLSALENKEKELQLLNDKVETEQAEIQELKKSNHLLEDSLKELQLLS 948

Query: 97   ENEITLCQKEITQL----KHQIILLLVPSEETDENDLILEVTAGVGGQEAMLF-TSEIFD 151
            E  ++L +KE++ +    K +I       E T EN  + E+ A +  ++  L   SE F 
Sbjct: 949  ET-LSLEKKEMSSIISLNKREI------EELTQENGTLKEINASLNQEKMNLIQKSESFA 1001

Query: 152  MY 153
             Y
Sbjct: 1002 NY 1003


>gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo
           sapiens]
          Length = 1591

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 16/38 (42%), Positives = 29/38 (76%), Gaps = 1/38 (2%)

Query: 66  AVIKLLNEKERELRETEHLLHDENEDLRKLAEN-EITL 102
           AVI L NEK+++L E E+++H +N ++++L ++ EI L
Sbjct: 922 AVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVL 959


>gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo
           sapiens]
          Length = 1594

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 16/38 (42%), Positives = 29/38 (76%), Gaps = 1/38 (2%)

Query: 66  AVIKLLNEKERELRETEHLLHDENEDLRKLAEN-EITL 102
           AVI L NEK+++L E E+++H +N ++++L ++ EI L
Sbjct: 922 AVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVL 959


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 48   ERQAGSEAHLKVRRPELLAVIKLLN----EKERELRETEHLLHDE--NEDLRKLAENEIT 101
            + Q G E  ++  RPE   V+        E E  L++    +  E  N D++++ E ++ 
Sbjct: 4218 DAQGGLEPRVEKTRPEPTEVLHACKTQVAELELWLQQANVAVEPETLNADMQQVLEQQLV 4277

Query: 102  LCQKEITQLKHQIILLL 118
             CQ  +T+++H++  LL
Sbjct: 4278 GCQAMLTEIEHKVAFLL 4294


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 48   ERQAGSEAHLKVRRPELLAVIKLLN----EKERELRETEHLLHDE--NEDLRKLAENEIT 101
            + Q G E  ++  RPE   V+        E E  L++    +  E  N D++++ E ++ 
Sbjct: 4218 DAQGGLEPRVEKTRPEPTEVLHACKTQVAELELWLQQANVAVEPETLNADMQQVLEQQLV 4277

Query: 102  LCQKEITQLKHQIILLL 118
             CQ  +T+++H++  LL
Sbjct: 4278 GCQAMLTEIEHKVAFLL 4294


>gi|239756284 PREDICTED: similar to GOLGA8B protein, partial [Homo
           sapiens]
          Length = 314

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 11/76 (14%)

Query: 43  LRTFLERQAGSEAHLKVRRPELLAVI-----KLLNEKERELRETEHLLHDENEDLRKLAE 97
           LR  LER AG E   +V   + ++++     + L E+E  L+E +  L ++ + L++LAE
Sbjct: 15  LRKELERVAG-ELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREQEKRLQQLAE 73

Query: 98  NEITLCQKEITQLKHQ 113
                 Q ++ +LKH+
Sbjct: 74  P-----QSDLEELKHE 84


>gi|25777704 zinc finger 398 isoform a [Homo sapiens]
          Length = 642

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 51  AGSEAHLKVRRPELLAVIKLLNEKERELR-ETEHLLHDENEDLRKLAENEITLCQKEITQ 109
           A +EAHL+     L  V+  +   ER++   +  LLH E       AE ++  C+K +T+
Sbjct: 30  AANEAHLQTAAISLWTVVAAVQAIERKVEIHSRRLLHLEGRT--GTAEKKLASCEKTVTE 87

Query: 110 LKHQI 114
           L +Q+
Sbjct: 88  LGNQL 92


>gi|124249396 coiled-coil domain containing 30 [Homo sapiens]
          Length = 783

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 61  RPELLAVIKLLNEKERELRETEHLLHDENEDLRKLAENEITLCQKEITQLKHQIILL--- 117
           R E L ++KLLN   R   E  H    + + ++    NE+ L  K I Q + +I +L   
Sbjct: 484 REEYLRLLKLLNVHVRNYNEKHHQQKVKLQKVKYRLTNEVELRDKRINQFEDEIGILQHK 543

Query: 118 -----LVPSEETDENDLIL 131
                 +  + T +ND +L
Sbjct: 544 IEKEKAIQDQITAQNDTLL 562


>gi|7656888 angiopoietin-like 3 precursor [Homo sapiens]
          Length = 460

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 71  LNEKERELRETEHLLHDENEDLRKLA----------ENEITLCQKEITQLKHQIILLLVP 120
           + E+E+ELR T + L  +NE+++ ++            E  L Q+++  L+ Q+  L+  
Sbjct: 92  IKEEEKELRRTTYKLQVKNEEVKNMSLELNSKLESLLEEKILLQQKVKYLEEQLTNLIQN 151

Query: 121 SEETDENDLILEVTAGVGGQEAML--FTSEIFDMYQQ 155
             ET E+  +  +   V  Q+  +      + D Y+Q
Sbjct: 152 QPETPEHPEVTSLKTFVEKQDNSIKDLLQTVEDQYKQ 188


>gi|40316926 clusterin-like 1 (retinal) [Homo sapiens]
          Length = 466

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 57  LKVRRPELLAVIKLLNEKERELRETEHL----LHDENEDLRKLAENE----ITLCQKEIT 108
           LK  R E    +KLLNE +  L E E L    L D   + R   EN      T CQ   +
Sbjct: 77  LKKCREEKQEALKLLNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRIYTTCQPSWS 136

Query: 109 QLKH-------QIILLLVPSEETDENDL 129
            +K+       +I   L P  E +E DL
Sbjct: 137 SVKNKIERFFRKIYQFLFPFHEDNEKDL 164


>gi|7657490 clusterin-like 1 (retinal) [Homo sapiens]
          Length = 466

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 57  LKVRRPELLAVIKLLNEKERELRETEHL----LHDENEDLRKLAENE----ITLCQKEIT 108
           LK  R E    +KLLNE +  L E E L    L D   + R   EN      T CQ   +
Sbjct: 77  LKKCREEKQEALKLLNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRIYTTCQPSWS 136

Query: 109 QLKH-------QIILLLVPSEETDENDL 129
            +K+       +I   L P  E +E DL
Sbjct: 137 SVKNKIERFFRKIYQFLFPFHEDNEKDL 164


>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
           sapiens]
          Length = 603

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 11/76 (14%)

Query: 43  LRTFLERQAGSEAHLKVRRPELLAVI-----KLLNEKERELRETEHLLHDENEDLRKLAE 97
           LR  LER AG E   +V   + ++++     + L E+E  L+E +  L +  + L++LAE
Sbjct: 303 LRKELERVAG-ELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAE 361

Query: 98  NEITLCQKEITQLKHQ 113
                 Q ++ +LKH+
Sbjct: 362 P-----QSDLEELKHE 372


>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
           sapiens]
          Length = 603

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 11/76 (14%)

Query: 43  LRTFLERQAGSEAHLKVRRPELLAVI-----KLLNEKERELRETEHLLHDENEDLRKLAE 97
           LR  LER AG E   +V   + ++++     + L E+E  L+E +  L +  + L++LAE
Sbjct: 303 LRKELERVAG-ELQAQVENNQCISLLNRGQKERLREQEERLQEQQERLREREKRLQQLAE 361

Query: 98  NEITLCQKEITQLKHQ 113
                 Q ++ +LKH+
Sbjct: 362 P-----QSDLEELKHE 372


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,141,977
Number of Sequences: 37866
Number of extensions: 645585
Number of successful extensions: 2929
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 2815
Number of HSP's gapped (non-prelim): 190
length of query: 380
length of database: 18,247,518
effective HSP length: 104
effective length of query: 276
effective length of database: 14,309,454
effective search space: 3949409304
effective search space used: 3949409304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.