Search of human proteins with 16596686

Search of human proteins with 16596686

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|16596686 transmembrane protein 203 [Homo sapiens]
         (136 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16596686 transmembrane protein 203 [Homo sapiens]                  270   3e-73
gi|22296884 transmembrane protein 185A [Homo sapiens]                  42   2e-04
gi|14269580 transmembrane protein 60 [Homo sapiens]                    36   0.008
gi|27501458 CTF18, chromosome transmission fidelity factor 18 ho...    30   0.46 
gi|116875819 taste receptor, type 2, member 39 [Homo sapiens]          30   0.79 
gi|58761541 solute carrier family 13 member 3 isoform b [Homo sa...    28   1.8  
gi|31377715 solute carrier family 13 member 3 isoform a [Homo sa...    28   1.8  
gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens]              28   2.3  

>gi|16596686 transmembrane protein 203 [Homo sapiens]
          Length = 136

 Score =  270 bits (689), Expect = 3e-73
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MLFSLRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLS 60
           MLFSLRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLS
Sbjct: 1   MLFSLRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLS 60

Query: 61  TYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQTRELWFGLITSP 120
           TYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQTRELWFGLITSP
Sbjct: 61  TYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQTRELWFGLITSP 120

Query: 121 LFILLQLLMIRACRVN 136
           LFILLQLLMIRACRVN
Sbjct: 121 LFILLQLLMIRACRVN 136


>gi|22296884 transmembrane protein 185A [Homo sapiens]
          Length = 350

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 18/130 (13%)

Query: 4   SLRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFF--------- 54
           +LR L Q    + F I+     LL+FSVLLALR+DG++   S+W VF P +         
Sbjct: 2   NLRGLFQDFNPSKFLIYA---CLLLFSVLLALRLDGIIQ-WSYWAVFAPIWLWKLMVIVG 57

Query: 55  AADGLSTYFTTIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQTRELWF 114
           A+ G   +     + +   +GE  +    +   + +  L  +FE+L+C ++ E+    W 
Sbjct: 58  ASVGTGVWAR---NPQYRAEGETCVEFKAMLIAVGIHLLLLMFEVLVCDRI-ERGSHFWL 113

Query: 115 GLITSPLFIL 124
            L+  PLF +
Sbjct: 114 -LVFMPLFFV 122


>gi|14269580 transmembrane protein 60 [Homo sapiens]
          Length = 133

 Score = 36.2 bits (82), Expect = 0.008
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 12/109 (11%)

Query: 24  LALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLSTYFTTIVSVRL-------FQDGE 76
           L  L+F ++L L++D   P  +W+ +F+P +  D   T    ++ V++       F    
Sbjct: 14  LFTLLFLIMLVLKLDEKAPW-NWFLIFIPVWIFD---TILLVLLIVKMAGRCKSGFDPRH 69

Query: 77  KRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQTRELWFGLITSPLFILL 125
               + +  W L  + LK  F + LC KL EQ   +    +  PL+ LL
Sbjct: 70  GSHNIKKKAWYLIAMLLKLAFCLALCAKL-EQFTTMNLSYVFIPLWALL 117


>gi|27501458 CTF18, chromosome transmission fidelity factor 18
           homolog [Homo sapiens]
          Length = 975

 Score = 30.4 bits (67), Expect = 0.46
 Identities = 18/66 (27%), Positives = 32/66 (48%)

Query: 18  EIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLSTYFTTIVSVRLFQDGEK 77
           E +VH+ +       L LR D + PG+    + VP+     L     ++ S++   DGE+
Sbjct: 175 EDYVHVTSTEGVRAYLVLRADPMAPGVQGSLLHVPWRGGGQLDLLGVSLASLKKQVDGER 234

Query: 78  RLAVLR 83
           R  +L+
Sbjct: 235 RERLLQ 240


>gi|116875819 taste receptor, type 2, member 39 [Homo sapiens]
          Length = 338

 Score = 29.6 bits (65), Expect = 0.79
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 12  LGFATFEIFVHLLALLVFSVLLAL----RVDGLVPGLSWWNVFVPF 53
           L FA +  F + + +  FS  L L    R+ GL+P L W +VF+ F
Sbjct: 125 LWFAAWLSFFYFVKIANFSYPLFLKLRWRITGLIPWLLWLSVFISF 170


>gi|58761541 solute carrier family 13 member 3 isoform b [Homo
           sapiens]
          Length = 555

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 5   LRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLSTYFT 64
           +RE  Q LG   F      +   +F++LL  R    +PG  W ++F P F +D ++    
Sbjct: 281 IREEYQNLGPIKFAEQAVFILFCMFAILLFTRDPKFIPG--WASLFNPGFLSDAVTG--V 336

Query: 65  TIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQT 109
            IV++  F   ++      L W     +     E LL  K A++T
Sbjct: 337 AIVTILFFFPSQRP----SLKWWFDFKAPNTETEPLLTWKKAQET 377


>gi|31377715 solute carrier family 13 member 3 isoform a [Homo
           sapiens]
          Length = 602

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 8/105 (7%)

Query: 5   LRELVQWLGFATFEIFVHLLALLVFSVLLALRVDGLVPGLSWWNVFVPFFAADGLSTYFT 64
           +RE  Q LG   F      +   +F++LL  R    +PG  W ++F P F +D ++    
Sbjct: 328 IREEYQNLGPIKFAEQAVFILFCMFAILLFTRDPKFIPG--WASLFNPGFLSDAVTG--V 383

Query: 65  TIVSVRLFQDGEKRLAVLRLFWVLTVLSLKFVFEMLLCQKLAEQT 109
            IV++  F   ++      L W     +     E LL  K A++T
Sbjct: 384 AIVTILFFFPSQRP----SLKWWFDFKAPNTETEPLLTWKKAQET 424


>gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens]
          Length = 2459

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 11/87 (12%)

Query: 34   ALRVDGLVPGLSWWNVFVPFF---AADGLSTYFTTIVSVRLFQDGEKRLAVLRLFWVLTV 90
            AL+V     GL WW + V +    A  G++ +FT +  +   +    R       W+++ 
Sbjct: 1807 ALQVSKPPQGLPWWCILVGWLLVAATSGVAAFFTMLYGLHYGRASSLR-------WLIS- 1858

Query: 91   LSLKFVFEMLLCQKLAEQTRELWFGLI 117
            +++ FV  M + Q L       +F L+
Sbjct: 1859 MAVSFVESMFVTQPLKVLGFAAFFALV 1885


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.337    0.147    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,646
Number of Sequences: 37866
Number of extensions: 135356
Number of successful extensions: 459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 8
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.