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Search of human proteins with 109948307
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109948307 p8 protein isoform a [Homo sapiens]
(100 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109948307 p8 protein isoform a [Homo sapiens] 206 3e-54
gi|6912570 p8 protein isoform b [Homo sapiens] 159 6e-40
gi|224589117 hypothetical protein LOC389493 [Homo sapiens] 56 5e-09
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens] 35 0.013
gi|116174778 centrosome spindle pole associated protein 1 isofor... 34 0.028
gi|116174789 centrosome spindle pole associated protein 1 isofor... 34 0.028
gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isofor... 32 0.083
gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isofor... 32 0.083
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 31 0.24
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 30 0.31
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 30 0.41
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 30 0.41
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 30 0.54
gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo ... 30 0.54
gi|38569475 metaxin 1 isoform 1 [Homo sapiens] 29 0.70
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 29 0.70
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 29 0.70
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 29 0.70
gi|38569477 metaxin 1 isoform 2 [Homo sapiens] 29 0.70
gi|148233596 LPS-responsive vesicle trafficking, beach and ancho... 29 0.70
gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens] 29 0.70
gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens] 29 0.70
gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens] 29 0.70
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 29 0.92
gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo s... 29 0.92
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 29 0.92
gi|13699803 WAS protein family, member 3 [Homo sapiens] 29 0.92
gi|82546824 forkhead box K1 [Homo sapiens] 29 0.92
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 29 0.92
gi|5032187 transducer of ERBB2, 1 [Homo sapiens] 28 1.2
>gi|109948307 p8 protein isoform a [Homo sapiens]
Length = 100
Score = 206 bits (524), Expect = 3e-54
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGR 60
MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGR
Sbjct: 1 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGR 60
Query: 61 KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR 100
KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR
Sbjct: 61 KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR 100
>gi|6912570 p8 protein isoform b [Homo sapiens]
Length = 82
Score = 159 bits (401), Expect = 6e-40
Identities = 82/100 (82%), Positives = 82/100 (82%), Gaps = 18/100 (18%)
Query: 1 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGR 60
MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLG GGGR
Sbjct: 1 MATFPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLG------------------GGGR 42
Query: 61 KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR 100
KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR
Sbjct: 43 KGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKRGARR 82
>gi|224589117 hypothetical protein LOC389493 [Homo sapiens]
Length = 97
Score = 56.2 bits (134), Expect = 5e-09
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 56 GGGGRKGRTKREAAANTNRPSPGGHERKLVTKLQNSERKKR 96
G G KGRT+RE A TN P+PGGHERK+ KL N +RK+R
Sbjct: 44 GAGRSKGRTRREQALRTNWPAPGGHERKVAQKLLNGQRKRR 84
>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
Length = 778
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 5 PPATSAPQQP-PGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGG--GRK 61
PP SA P PGP S + L+S H+ P P T TP GGG G
Sbjct: 492 PPPPSARSTPLPGPPGSPRSSGGTPLHSPLHT---PRASPTGTPGTTPPPSPGGGVGGAA 548
Query: 62 GRTKREAAANTNRPSPGGHERKL 84
R++ + N+ SP H RK+
Sbjct: 549 WRSRLNSIRNSFLGSPRFHRRKM 571
>gi|116174778 centrosome spindle pole associated protein 1 isoform b
[Homo sapiens]
Length = 1221
Score = 33.9 bits (76), Expect = 0.028
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 6 PATSAPQQPPGPEDEDSSLDESDLYSLAHSYLG----PLIMPMPTSPLTPALVT 55
P SAP PP P DL S S LG P I P+P PL P L T
Sbjct: 456 PPLSAPSVPPIPSVHPVPSQNEDLRSGLSSALGEMVSPRIAPLPPPPLLPPLAT 509
>gi|116174789 centrosome spindle pole associated protein 1 isoform a
[Homo sapiens]
Length = 1256
Score = 33.9 bits (76), Expect = 0.028
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 6 PATSAPQQPPGPEDEDSSLDESDLYSLAHSYLG----PLIMPMPTSPLTPALVT 55
P SAP PP P DL S S LG P I P+P PL P L T
Sbjct: 491 PPLSAPSVPPIPSVHPVPSQNEDLRSGLSSALGEMVSPRIAPLPPPPLLPPLAT 544
>gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isoform B
[Homo sapiens]
Length = 336
Score = 32.3 bits (72), Expect = 0.083
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 25/94 (26%)
Query: 9 SAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGRKGRTKREA 68
S P+ PP P D S L +P P S T G R+GR+ R A
Sbjct: 29 SGPELPPPPPDRSSRL----------------CVPAPLS-------TAPGAREGRSARRA 65
Query: 69 AANTNRPSPGGHE--RKLVTKLQNSERKKRGARR 100
A P P R L LQ R++ GA R
Sbjct: 66 ARGNLEPPPRASRPARPLRPGLQQRLRRRPGAPR 99
>gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isoform A
[Homo sapiens]
Length = 418
Score = 32.3 bits (72), Expect = 0.083
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 25/94 (26%)
Query: 9 SAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGRKGRTKREA 68
S P+ PP P D S L +P P S T G R+GR+ R A
Sbjct: 29 SGPELPPPPPDRSSRL----------------CVPAPLS-------TAPGAREGRSARRA 65
Query: 69 AANTNRPSPGGHE--RKLVTKLQNSERKKRGARR 100
A P P R L LQ R++ GA R
Sbjct: 66 ARGNLEPPPRASRPARPLRPGLQQRLRRRPGAPR 99
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 5 PPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGG 59
PP P PPGP L S + + AH G P P PL A GGGG
Sbjct: 170 PPPPPGPPPPPGP-PPPPGLPPSGVPAAAHGAGGG---PPPAPPLPAAQGPGGGG 220
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 30.4 bits (67), Expect = 0.31
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 5 PPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGRKGRT 64
PPA S P+ P +++DS ++S+ + ++ P +P +P P GG K +
Sbjct: 753 PPAPSPPKAPDTNKEDDSKDNDSE---SDYMFMAPGAGAIPKNPRNP---QGGSSSKSWS 806
Query: 65 KREAAANTNRPSPGG 79
+ N R SP G
Sbjct: 807 SYFSLPNPFRSSPLG 821
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 30.0 bits (66), Expect = 0.41
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 1 MATFPPATSAPQQPPGPEDEDSSLDESDLYSL----AHSYLG-PLIMPMPTSP----LTP 51
MA+ PPA+ +PPGP+ E D L A LG P+ P P SP P
Sbjct: 1 MASAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAP 60
Query: 52 ALVTGGGGR 60
GG R
Sbjct: 61 GAAADGGAR 69
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 30.0 bits (66), Expect = 0.41
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 6 PATSAPQQPPGPEDEDSSLDESDL----------YSLAHSYLGPLIMPMPTSPLTPALVT 55
PA SAP P PE + L E + +S S G P P +P VT
Sbjct: 375 PAPSAPPSPSAPEPPKADLFEQKVVFSGFGPIMRFSTTTSSSGRARAPSPGDYKSPH-VT 433
Query: 56 GGGGRKGRTKR-EAAANTNRPSPGGHERKLVTKLQNSERKKR 96
G G G KR A + T P+ E L K + ++ R
Sbjct: 434 GSGASAGTHKRMPALSATPVPADETPETGLKEKKHKASKRSR 475
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 6 PATSAPQQPPGPEDEDSSLDESDLYSLA--HSYLGPLIMPMPTSPLTPALVTGGGGRKG 62
P PQ PPGP E + E A GP+ +P P P+ P G G G
Sbjct: 1104 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIG 1162
>gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo
sapiens]
Length = 324
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 19/95 (20%)
Query: 6 PATSAPQQ------PPGPEDEDSSLDESDLYSLAHS-----YLGPLIMP--------MPT 46
P SAP++ PP P L A + +LGPL+ P +P
Sbjct: 105 PEDSAPRRFAPDPRPPEPRPPQQLLPAIGTRGRAATARHPHWLGPLVSPTTAHHPLRLPE 164
Query: 47 SPLTPALVTGGGGRKGRTKREAAANTNRPSPGGHE 81
P + GG +G + + N P+PGG E
Sbjct: 165 EPPSHWRSLRAGGGRGAPVQPLSVNRRSPTPGGRE 199
>gi|38569475 metaxin 1 isoform 1 [Homo sapiens]
Length = 466
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 12 QQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGRKGRTK 65
++PP PE S S P I P P + V GGG R+GR +
Sbjct: 83 RRPPSPEARGPVPRSSAASRARRSLASPGISPGPLTATIGGAVAGGGPRQGRAE 136
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 6 PATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPM--PTSPLTPALVTGGGGRKGR 63
PA APQ PP + S L S L P P P P TP ++ G
Sbjct: 238 PAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPVQPHTPVTISLG------ 291
Query: 64 TKREAAANTNRPSPGGHERKLVTKLQN 90
+ N+P H V K++N
Sbjct: 292 --TAPSLQNNQPVEFNHAINYVNKIKN 316
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 6 PATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPM--PTSPLTPALVTGGGGRKGR 63
PA APQ PP + S L S L P P P P TP ++ G
Sbjct: 238 PAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPVQPHTPVTISLG------ 291
Query: 64 TKREAAANTNRPSPGGHERKLVTKLQN 90
+ N+P H V K++N
Sbjct: 292 --TAPSLQNNQPVEFNHAINYVNKIKN 316
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Query: 6 PATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPM--PTSPLTPALVTGGGGRKGR 63
PA APQ PP + S L S L P P P P TP ++ G
Sbjct: 238 PAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPVQPHTPVTISLG------ 291
Query: 64 TKREAAANTNRPSPGGHERKLVTKLQN 90
+ N+P H V K++N
Sbjct: 292 --TAPSLQNNQPVEFNHAINYVNKIKN 316
>gi|38569477 metaxin 1 isoform 2 [Homo sapiens]
Length = 435
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 12 QQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGRKGRTK 65
++PP PE S S P I P P + V GGG R+GR +
Sbjct: 83 RRPPSPEARGPVPRSSAASRARRSLASPGISPGPLTATIGGAVAGGGPRQGRAE 136
>gi|148233596 LPS-responsive vesicle trafficking, beach and anchor
containing [Homo sapiens]
Length = 2863
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 16 GPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGG 57
G +D SS+DE DL +LA GP+ + P + P++V G
Sbjct: 2058 GDDDTLSSVDEKDLENLA----GPVSLSTPAQLVAPSVVVKG 2095
>gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens]
Length = 1474
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 4 FPPATSAPQQPPGPEDEDSSLDESDLYS-LAHSYL--------GPLIMPMPTSPLTPALV 54
FPP P+ P G D++ E + S L H+ L GP P P P+ P V
Sbjct: 1259 FPPGDGGPEPPRGRNLADAAAFEKMIISELVHNNLRGSSSAAKGP---PPPEPPVPP--V 1313
Query: 55 TGGGGRK 61
GGGG +
Sbjct: 1314 PGGGGEE 1320
>gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens]
Length = 1469
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 4 FPPATSAPQQPPGPEDEDSSLDESDLYS-LAHSYL--------GPLIMPMPTSPLTPALV 54
FPP P+ P G D++ E + S L H+ L GP P P P+ P V
Sbjct: 1254 FPPGDGGPEPPRGRNLADAAAFEKMIISELVHNNLRGSSSAAKGP---PPPEPPVPP--V 1308
Query: 55 TGGGGRK 61
GGGG +
Sbjct: 1309 PGGGGEE 1315
>gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]
Length = 360
Score = 29.3 bits (64), Expect = 0.70
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 14/86 (16%)
Query: 10 APQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPAL----------VTGGGG 59
+P +PP P + SS L +L L P+ P P +P + V GGG
Sbjct: 15 SPARPPSPRLDVSSDSFDPLLALYAPRLPPI--PYPNAPCFNNVAEYESFLRTGVRGGGR 72
Query: 60 RKGRTKREAAAN--TNRPSPGGHERK 83
+GR + AA + P P G R+
Sbjct: 73 GRGRARGAAAGSGVPAAPGPSGRTRR 98
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 28.9 bits (63), Expect = 0.92
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 6 PATSAPQQPP-GPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPA 52
PA S P +PP P E+ L S SL+ + P +P P SP+ A
Sbjct: 898 PALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLPPPLSPIITA 945
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 5 PPATSAPQQPPGPEDEDSSLDESDLYSLAHS-----YLGPLIMPMPTSPLTP 51
PP +P PP S L+ES L S PL P SPL+P
Sbjct: 496 PPPEESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPLSP 547
>gi|78000163 sorbin and SH3 domain containing 1 isoform 3 [Homo
sapiens]
Length = 1292
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 4 FPPATSAPQQPPGPEDEDSSLDESDLYSLAHSY----LGPLIMPMPTSPLT 50
+ P P P P+ ED D+SDLYS +S+ PL +P S ++
Sbjct: 437 YTPTYQFPASTPSPKSED---DDSDLYSPRYSFSEDTKSPLSVPRSKSEMS 484
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 28.9 bits (63), Expect = 0.92
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 4 FPPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMP--MPTSPLTPALVTGGG 58
FPP S PQQ P P + S S + GPL P +P S AL GG
Sbjct: 1141 FPPVQSPPQQVPFPHNGPSGGQGSFPGGMGFPGEGPLGRPSNLPQSSADAALCKPGG 1197
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 28.9 bits (63), Expect = 0.92
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 1 MATFPPATSAPQQPPGPEDEDSSLDESDLY 30
+ T PP P PPGP SSL S ++
Sbjct: 391 LVTAPPPPGPPPPPPGPPGPGSSLSSSPMH 420
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 24/58 (41%)
Query: 5 PPATSAPQQPPGPEDEDSSLDESDLYSLAHSYLGPLIMPMPTSPLTPALVTGGGGRKG 62
PPA + PQ PPGP P P PL P + G G G
Sbjct: 40 PPAPAQPQPPPGPP------------------------PPPPPPLPPGAIAGAGSSGG 73
>gi|148229134 ring finger and KH domain containing 2 [Homo
sapiens]
Length = 659
Score = 28.9 bits (63), Expect = 0.92
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 5 PPATSAPQQPP--GPEDEDSSLDESDLYSLAHSYLGPLIM--PMPTSPLTPALVTGGGGR 60
PP P PP GPE E L L L L + P P P PAL
Sbjct: 25 PPPPPPPLPPPSGGPELEGDGL-------LLRERLAALGLDDPSPAEPGAPALRAPAAAA 77
Query: 61 KGRTKREAAANTNRPSPGG 79
+G+ +R A + +P G
Sbjct: 78 QGQARRAAELSPEERAPPG 96
>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
Length = 345
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 19 DEDSSLDESDLYSLAHSY-LGPLIMPMPTSPLTPALVTGGGGRKGRTKREAAANTNR 74
D SS+ S HS + P MP T PLT T + G TK + + +N+
Sbjct: 144 DPASSVSSSPSPPFGHSAAVSPTFMPRSTQPLTFTTATFAATKFGSTKMKNSGRSNK 200
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,520,768
Number of Sequences: 37866
Number of extensions: 311486
Number of successful extensions: 1822
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 1735
Number of HSP's gapped (non-prelim): 196
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.