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Search of human proteins with 148806888
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148806888 hypothetical protein LOC339512 [Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148806888 hypothetical protein LOC339512 [Homo sapiens] 612 e-175
gi|8922313 G patch domain containing 2 [Homo sapiens] 41 0.001
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa... 36 0.037
gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 36 0.037
gi|47519675 microtubule-associated protein 4 isoform 2 [Homo sap... 36 0.037
gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 36 0.037
gi|147903302 MAP7 domain containing 3 [Homo sapiens] 35 0.11
gi|55770902 opioid growth factor receptor-like 1 [Homo sapiens] 35 0.11
gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens] 34 0.14
gi|217330641 IWS1 homolog [Homo sapiens] 34 0.18
gi|32454741 serine (or cysteine) proteinase inhibitor, clade H, ... 33 0.31
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 33 0.31
gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens] 33 0.31
gi|58761537 hypothetical protein LOC84437 [Homo sapiens] 33 0.31
gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sap... 33 0.31
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 33 0.40
gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform... 32 0.53
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform... 32 0.53
gi|17149853 WAF-1/CIP1 stabilizing protein 39 [Homo sapiens] 32 0.53
gi|36029914 valosin containing protein (p97)/p47 complex interac... 32 0.69
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens] 32 0.69
gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo sa... 32 0.69
gi|31377562 HAUS augmin-like complex, subunit 6 [Homo sapiens] 32 0.90
gi|24415404 MDN1, midasin homolog [Homo sapiens] 32 0.90
gi|121582655 ankyrin repeat domain 35 [Homo sapiens] 31 1.2
gi|224549005 RNA binding motif protein 17 [Homo sapiens] 31 1.5
gi|14249678 RNA binding motif protein 17 [Homo sapiens] 31 1.5
gi|82799486 phosphodiesterase 4B isoform 1 [Homo sapiens] 31 1.5
gi|82799484 phosphodiesterase 4B isoform 3 [Homo sapiens] 31 1.5
gi|82799482 phosphodiesterase 4B isoform 2 [Homo sapiens] 31 1.5
>gi|148806888 hypothetical protein LOC339512 [Homo sapiens]
Length = 302
Score = 612 bits (1577), Expect = e-175
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MERHMVRGQLYKHFDLERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRL 60
MERHMVRGQLYKHFDLERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRL
Sbjct: 1 MERHMVRGQLYKHFDLERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRL 60
Query: 61 QQAETMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKS 120
QQAETMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKS
Sbjct: 61 QQAETMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKS 120
Query: 121 QVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQ 180
QVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQ
Sbjct: 121 QVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQ 180
Query: 181 NQEVSTNTIEQGPSSSPASDSGMACADETRSKDVALKPDGNTGKQIPPKHMECAGSFEGE 240
NQEVSTNTIEQGPSSSPASDSGMACADETRSKDVALKPDGNTGKQIPPKHMECAGSFEGE
Sbjct: 181 NQEVSTNTIEQGPSSSPASDSGMACADETRSKDVALKPDGNTGKQIPPKHMECAGSFEGE 240
Query: 241 FTKPTFLELLSKARNAHYLRHRVPPESERLLSIGEIFGHGESSSSRAGKECENRVPSKFL 300
FTKPTFLELLSKARNAHYLRHRVPPESERLLSIGEIFGHGESSSSRAGKECENRVPSKFL
Sbjct: 241 FTKPTFLELLSKARNAHYLRHRVPPESERLLSIGEIFGHGESSSSRAGKECENRVPSKFL 300
Query: 301 PL 302
PL
Sbjct: 301 PL 302
>gi|8922313 G patch domain containing 2 [Homo sapiens]
Length = 528
Score = 41.2 bits (95), Expect = 0.001
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 15/159 (9%)
Query: 67 KKKFSSYLGNGFQ-KRP----EDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQ 121
K++ SS L N + KRP D V + R R + K+M A + QD ++
Sbjct: 125 KRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRM---AVDLPQDISNKRTM 181
Query: 122 VPPSH---DAGLKDPMKSKKQPLSQNN---RTACFIKEQPQAQEKDSVNPSKDVDPSKGI 175
P D + + Q ++N R I++ P+ Q++ V S++ + +
Sbjct: 182 TQPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETNQTNKD 241
Query: 176 SVPCQNQEVSTNTIEQGPSSSPAS-DSGMACADETRSKD 213
+ C+ Q+VS + + SSS +S D+G+ DE R D
Sbjct: 242 KMECEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGD 280
>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
sapiens]
Length = 817
Score = 36.2 bits (82), Expect = 0.037
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 7/149 (4%)
Query: 87 VFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPSHDAGLKDP-----MKSKKQPL 141
+ +P ++ +P+ KK + LAT T SK++ P+ P + K L
Sbjct: 420 ITTPPNKELPPSPE-KKTKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKPMSL 478
Query: 142 SQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIEQGPSSSPASDS 201
+ A K A + S+ PSKDV P + S + P+S S S
Sbjct: 479 ASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEKRASPSKPASAPASRSGSKS 538
Query: 202 GMACADETRSKDVA-LKPDGNTGKQIPPK 229
A T + VA P + + PK
Sbjct: 539 TQTVAKTTTAAAVASTGPSSRSPSTLLPK 567
>gi|197276600 microtubule-associated protein 4 isoform 4 [Homo
sapiens]
Length = 1135
Score = 36.2 bits (82), Expect = 0.037
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 7/149 (4%)
Query: 87 VFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPSHDAGLKDP-----MKSKKQPL 141
+ +P ++ +P+ KK + LAT T SK++ P+ P + K L
Sbjct: 685 ITTPPNKELPPSPE-KKTKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKPMSL 743
Query: 142 SQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIEQGPSSSPASDS 201
+ A K A + S+ PSKDV P + S + P+S S S
Sbjct: 744 ASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEKRASPSKPASAPASRSGSKS 803
Query: 202 GMACADETRSKDVA-LKPDGNTGKQIPPK 229
A T + VA P + + PK
Sbjct: 804 TQTVAKTTTAAAVASTGPSSRSPSTLLPK 832
>gi|47519675 microtubule-associated protein 4 isoform 2 [Homo
sapiens]
Length = 887
Score = 36.2 bits (82), Expect = 0.037
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 7/149 (4%)
Query: 87 VFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPSHDAGLKDP-----MKSKKQPL 141
+ +P ++ +P+ KK + LAT T SK++ P+ P + K L
Sbjct: 420 ITTPPNKELPPSPE-KKTKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKPMSL 478
Query: 142 SQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIEQGPSSSPASDS 201
+ A K A + S+ PSKDV P + S + P+S S S
Sbjct: 479 ASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEKRASPSKPASAPASRSGSKS 538
Query: 202 GMACADETRSKDVA-LKPDGNTGKQIPPK 229
A T + VA P + + PK
Sbjct: 539 TQTVAKTTTAAAVASTGPSSRSPSTLLPK 567
>gi|47519639 microtubule-associated protein 4 isoform 1 [Homo
sapiens]
Length = 1152
Score = 36.2 bits (82), Expect = 0.037
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 7/149 (4%)
Query: 87 VFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPSHDAGLKDP-----MKSKKQPL 141
+ +P ++ +P+ KK + LAT T SK++ P+ P + K L
Sbjct: 685 ITTPPNKELPPSPE-KKTKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKPMSL 743
Query: 142 SQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIEQGPSSSPASDS 201
+ A K A + S+ PSKDV P + S + P+S S S
Sbjct: 744 ASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEKRASPSKPASAPASRSGSKS 803
Query: 202 GMACADETRSKDVA-LKPDGNTGKQIPPK 229
A T + VA P + + PK
Sbjct: 804 TQTVAKTTTAAAVASTGPSSRSPSTLLPK 832
>gi|147903302 MAP7 domain containing 3 [Homo sapiens]
Length = 876
Score = 34.7 bits (78), Expect = 0.11
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 17 ERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRLQQAETMKKKFSSYLGN 76
ERK Q E ++++R ++LK + EQR++ E +R Q+ E K+KF++ L
Sbjct: 95 ERKTKLQYEKQMEERQRKLKE------RKEKEEQRRIAAEEKRHQKDEAQKEKFTAILYR 148
Query: 77 GFQKR------PEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPSHDAGL 130
++R + + + A K A ++ Q T Q+P S AGL
Sbjct: 149 TLERRRLADDYQQKRWSWGGSAMANSESKTANKRSASTEKLEQGTSALIRQMPLS-SAGL 207
Query: 131 KDPMKSKK 138
++ + +K
Sbjct: 208 QNSVAKRK 215
>gi|55770902 opioid growth factor receptor-like 1 [Homo sapiens]
Length = 451
Score = 34.7 bits (78), Expect = 0.11
Identities = 36/185 (19%), Positives = 75/185 (40%), Gaps = 19/185 (10%)
Query: 25 EARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRLQQAETMKKKF-------SSYLGNG 77
EA ++ + +K L + ++R+ +K L+ Q+ T + F G+
Sbjct: 265 EALVENTIPNIKQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPRKEQSEGSK 324
Query: 78 FQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPSHDAGLKDPMKSK 137
QK + H+ + K + A + T + K P K+P++
Sbjct: 325 AQKMSSPLASSHNSQTSMHKKAKDSKNSSSAVHLNSKTAEDKKVAP-------KEPVEET 377
Query: 138 KQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQE-VSTNTIEQGPSSS 196
+P + + A +P+ EKDS + + P K ++ P + +E VS E+G + +
Sbjct: 378 DRPSPEPSNEAA----KPRNTEKDSNAENMNSQPEKTVTTPTEKKESVSPENNEEGGNDN 433
Query: 197 PASDS 201
+++
Sbjct: 434 QDNEN 438
>gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]
Length = 490
Score = 34.3 bits (77), Expect = 0.14
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 18/140 (12%)
Query: 50 QRQLQKELQRLQQAETMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALAT 109
+R +K+ +R ++ + +K S + D V P+ +++ KK R
Sbjct: 293 ERNFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGRGK 352
Query: 110 RMAQDTCKSKSQVPPSHDAGLKDPMK----------SKKQPLSQNN--------RTACFI 151
+ T +S+ ++P G K P KK P N R A
Sbjct: 353 AQVKATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPA 412
Query: 152 KEQPQAQEKDSVNPSKDVDP 171
E P+A E ++ S + P
Sbjct: 413 SETPKAAESETPGKSPEKKP 432
>gi|217330641 IWS1 homolog [Homo sapiens]
Length = 819
Score = 33.9 bits (76), Expect = 0.18
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 18/108 (16%)
Query: 118 SKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNP---------SKD 168
S+S+ PP H A + + K +S + ++ P+ Q DS N S+
Sbjct: 224 SESEEPPRHQASDSENEELPKPRISDSES-----EDPPRHQASDSENEELPKPRISDSES 278
Query: 169 VDPSKGISVPCQNQEVS----TNTIEQGPSSSPASDSGMACADETRSK 212
DP + + +N+E+ +++ +GP PASDS A + K
Sbjct: 279 EDPPRNQASDSENEELPKPRVSDSESEGPQKGPASDSETEDASRHKQK 326
>gi|32454741 serine (or cysteine) proteinase inhibitor, clade H,
member 1 precursor [Homo sapiens]
Length = 418
Score = 33.1 bits (74), Expect = 0.31
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 5 MVRGQLYKHFDLERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRLQQAE 64
M R LY ++D E++ + E L +L L ++ +HV+ L ++ L KE ++ +
Sbjct: 237 MHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIILMPHHVEPLERLEKLLTKEQLKIWMGK 296
Query: 65 TMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRA 98
KK + L G + D+ QKH A
Sbjct: 297 MQKKAVAISLPKGVVEVTHDL--------QKHLA 322
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 33.1 bits (74), Expect = 0.31
Identities = 34/183 (18%), Positives = 74/183 (40%), Gaps = 6/183 (3%)
Query: 91 QGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACF 150
+ + +A K A + A+ K +++ P + +K+ KS ++ S A
Sbjct: 673 EAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKT 732
Query: 151 IKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIEQ--GPSSSPASDSGMACADE 208
++ ++++ +P K P K ++ ++ E T E+ P+ + +E
Sbjct: 733 PEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEE 792
Query: 209 TRSKDVA---LKPDGNTGKQIPPKHMECAGSFEGEFTKPTFLELLSKARNAHYLRHRVPP 265
+S + A LK D ++ PK E + E KP +++ + A + P
Sbjct: 793 VKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEE-EKPQEVKVKEPPKKAEEEKAPATP 851
Query: 266 ESE 268
++E
Sbjct: 852 KTE 854
Score = 32.3 bits (72), Expect = 0.53
Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 7/149 (4%)
Query: 97 RAPQAKKMRALATRM---AQDTCKSKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKE 153
+ P ++ R+ A + A+ K + + P + LK+ K+ ++ + + +KE
Sbjct: 767 KTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKE 826
Query: 154 QPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIE----QGPSSSPASDSGMACADET 209
+ + QE P K + K + P ++ + E + P A
Sbjct: 827 EEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPK 886
Query: 210 RSKDVALKPDGNTGKQIPPKHMECAGSFE 238
SK A K + K++P E E
Sbjct: 887 ESKVEAKKEEAEDKKKVPTPEKEAPAKVE 915
>gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens]
Length = 1312
Score = 33.1 bits (74), Expect = 0.31
Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 25/205 (12%)
Query: 3 RHMVRGQLYKHFDLERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRLQQ 62
R R Q YK LE + +Q+E RL ++LQ+ H L + +Q+Q Q++LQ+ QQ
Sbjct: 443 RQAEREQEYKRKQLEEQ--RQSE-RLQRQLQQ------EHAYLKSLQQQQQQQQLQKQQQ 493
Query: 63 AETMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHR------APQAKKMRALATRMAQDTC 116
+ + G P D ++ + ++ R +P AK + +
Sbjct: 494 QQLLPGDRKPLYHYGRGMNPADKPAWAREVEERTRMNKQQNSPLAKSKP--GSTGPEPPI 551
Query: 117 KSKSQVPP---SHDAGLKDPMKSKKQP-LSQNNRTACFIKEQPQAQEKDSVNPSKDVDPS 172
S PP S ++ P++ ++ P S ++ + P + + D P+ PS
Sbjct: 552 PQASPGPPGPLSQTPPMQRPVEPQEGPHKSLQDQPTRNLAAFPASHDPDPAIPAPTATPS 611
Query: 173 KGISVPCQNQEVSTNTIEQGPSSSP 197
+V QN + ++ +GP SP
Sbjct: 612 ARGAVIRQNSDPTS----EGPGPSP 632
>gi|58761537 hypothetical protein LOC84437 [Homo sapiens]
Length = 345
Score = 33.1 bits (74), Expect = 0.31
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 12 KHFDLERKNAKQAEARLDQRLQRLKVICLYHVKL-LTWEQRQLQKELQRLQQAETMKKKF 70
+ D+E + + + RL +RL+ + + H +L L E+ Q+++E RLQ + K
Sbjct: 217 RRLDIEAERLQVEKERLQIEKERLRHLDMEHERLQLEKERLQIEREKLRLQIVNSEKPSL 276
Query: 71 SSYLGNGFQK--RPEDV 85
+ LG G + +P+D+
Sbjct: 277 ENELGQGEKSMLQPQDI 293
>gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sapiens]
Length = 2961
Score = 33.1 bits (74), Expect = 0.31
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 136 SKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIEQGPSS 195
S QPL++ RT+ ++E QA SV+P++ P+ G +Q T + PSS
Sbjct: 1451 SHLQPLNKRQRTSSVVEEHFQA----SVSPTEAAPPATG------DQSPGLGTQPKLPSS 1500
Query: 196 S--PASDSGMACADETRS 211
S PA+D A A+E S
Sbjct: 1501 SGLPAADVSPATAEEPLS 1518
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 32.7 bits (73), Expect = 0.40
Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 38/187 (20%)
Query: 14 FDLE-RKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRLQQAET------- 65
F LE R+ K E R+ + LQ+++ K T E ++ Q E + QQ +
Sbjct: 577 FSLEDRRKLKMKELRIQRSLQKMRS------KPATGEPQKGQPEPAKDQQQKAAQHHTEE 630
Query: 66 -------MKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKS 118
K+K S GFQ + E V P G+++ + R R+ +
Sbjct: 631 QSKVPPEQKRKAGSTSWTGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRL-----RD 685
Query: 119 KSQVPPSHDAGLK---DPMKSKKQPLS---------QNNRTACFIKEQPQAQEKDSVNPS 166
K +V P H K + K +KQ LS + N+T + + ++ + PS
Sbjct: 686 KGKVKPVHPKKPKPQINQWKQEKQQLSSEQVSRKKAKGNKTETRFNQLVEQYKQKLLGPS 745
Query: 167 KDVDPSK 173
K +K
Sbjct: 746 KGAPLAK 752
>gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform b
[Homo sapiens]
Length = 807
Score = 32.3 bits (72), Expect = 0.53
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 54 QKELQRLQQAETMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQ 113
+KE Q+ QQ + KKK + G +R +DV G +K + KK+
Sbjct: 61 EKEQQQQQQQQQQKKKRDTRKG----RRKKDV---DDDGEEKELMERLKKLSV------- 106
Query: 114 DTCKSKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSK 173
T + +VP G K K+K N A I++Q + +E++ +P K P K
Sbjct: 107 PTSDEEDEVPAPKPRGGK---KTKG-----GNVFAALIQDQSEEEEEEEKHPPKPAKPEK 158
>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
[Homo sapiens]
Length = 845
Score = 32.3 bits (72), Expect = 0.53
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 54 QKELQRLQQAETMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQ 113
+KE Q+ QQ + KKK + G +R +DV G +K + KK+
Sbjct: 61 EKEQQQQQQQQQQKKKRDTRKG----RRKKDV---DDDGEEKELMERLKKLSV------- 106
Query: 114 DTCKSKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSK 173
T + +VP G K K+K N A I++Q + +E++ +P K P K
Sbjct: 107 PTSDEEDEVPAPKPRGGK---KTKG-----GNVFAALIQDQSEEEEEEEKHPPKPAKPEK 158
>gi|17149853 WAF-1/CIP1 stabilizing protein 39 [Homo sapiens]
Length = 349
Score = 32.3 bits (72), Expect = 0.53
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 121 QVPPSHDAGLKD---PMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISV 177
+ PP + G KD P + ++ L +N + I++QP+ +++ DP+ I
Sbjct: 2 ETPPVNTIGEKDTSQPQQEWEKNLRENLDSVIQIRQQPRDPPTETLELEVSPDPASQILE 61
Query: 178 PCQNQEVSTNTIEQGPSSSPASDSGMACADETRSKDVALKPDGNTGKQI 226
Q E +E S S S M + ++ D+ PDG+ K+I
Sbjct: 62 HTQGAEKLVAELEGDSHKSHGSTSQM--PEALQASDLWYCPDGSFVKKI 108
>gi|36029914 valosin containing protein (p97)/p47 complex
interacting protein 1 [Homo sapiens]
Length = 1222
Score = 32.0 bits (71), Expect = 0.69
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 134 MKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIEQGP 193
M ++ + QN I EQ +K K KG Q + VS +TI GP
Sbjct: 709 MSKTERTIQQN------ITEQASVMQKRKTEKLKQ--EQKG-----QPRTVSPSTIRDGP 755
Query: 194 SSSPASDSGMACADETRSKDVALKPDGNTGKQ------IPPKHMECAGSFEGEFTKPTFL 247
SS+PA+ + A T SK+ ++ N G+Q E S EF P +L
Sbjct: 756 SSAPATPT-KAPYSPTTSKEKKIRITTNDGRQSMVTLKSSTTFFELQESIAREFNIPPYL 814
Query: 248 ELL 250
+ +
Sbjct: 815 QCI 817
>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
Length = 2481
Score = 32.0 bits (71), Expect = 0.69
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 24/156 (15%)
Query: 90 PQGRQKH-RAPQAKKMRALATRMAQDTCKSKSQVPP-SHDAGLKDPMKSK------KQPL 141
P GRQ H R+ A R+ R SQ+PP + AG KD + + +PL
Sbjct: 2017 PGGRQDHDRSKNAYLQRSTLPR---------SQLPPQTRPAGNKDEEEYEGFSIISNEPL 2067
Query: 142 S--QNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEV----STNTIEQGPSS 195
+ Q NR CF + Q Q + V IS P ++ S N+ Q
Sbjct: 2068 ATYQENRNTCFSPDHKQPQPGTAGGMRVSVSSKGSISTPNSPVKMTLIPSPNSPFQKVGK 2127
Query: 196 SPASDSGMACADETRSKDVALKPDGNTGKQIPPKHM 231
+SD+G + T + D +K + ++ P+ +
Sbjct: 2128 LASSDTGESDQSSTET-DSTVKSQEESNPKLDPQEL 2162
>gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo
sapiens]
Length = 669
Score = 32.0 bits (71), Expect = 0.69
Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 19/166 (11%)
Query: 12 KHFDLERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKEL-QRLQQAETMKKKF 70
+H+ ER+ ++ A QR QR + + V L E+RQLQ + Q LQ+ E ++++
Sbjct: 363 RHWQREREALREDCAAQAQRAQRAQQLLQLQVFQLQQEKRQLQDDFAQLLQEREQLERRC 422
Query: 71 SSY------LGNGFQ-------KRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCK 117
++ LG + ++ ++ + Q ++ K +A R+A +
Sbjct: 423 ATLEREQRELGPRLEETKWEVCQKSGEISLLKQQLKESQAELVQKGSELVALRVALREAR 482
Query: 118 SKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSV 163
+ +V GL++ ++++ L AC + Q QE + +
Sbjct: 483 ATLRVSEGRARGLQEAARARELELE-----ACSQELQRHRQEAEQL 523
>gi|31377562 HAUS augmin-like complex, subunit 6 [Homo sapiens]
Length = 955
Score = 31.6 bits (70), Expect = 0.90
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 67 KKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQ-VPPS 125
KK+ SYL N +P+ + +P + ++ T DTC ++ + PS
Sbjct: 846 KKREESYLSNSQ----------TPERHKPELSPTPQNVQTDDTLNFLDTCDLHTEHIKPS 895
Query: 126 HDAGLKDPMKS-----KKQPLSQNNRT--ACFIKEQPQAQEKDSVNPSKD 168
+ + +S K P+ Q RT AC + E P +E+D +N S D
Sbjct: 896 LRTSIGERKRSLSPLIKFSPVEQRLRTTIACSLGELPNLKEEDILNKSLD 945
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 31.6 bits (70), Expect = 0.90
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 18 RKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRLQ---------QAETMKK 68
R+ +K + ++++ + L CLYH + E R L L + +E
Sbjct: 2956 RRCSKNQQPQINEEISHLISFCLYHTPVTPQELRDLWSLLHHQKVSPEEITSLWSELFNS 3015
Query: 69 KFSSYLGNGFQKRPEDVLVFSP-QGRQKHRAPQA 101
F S+ + PE L+++P G Q+ AP++
Sbjct: 3016 MFMSFWSSTVTTNPEYWLMWNPLPGMQQREAPKS 3049
>gi|121582655 ankyrin repeat domain 35 [Homo sapiens]
Length = 1001
Score = 31.2 bits (69), Expect = 1.2
Identities = 40/203 (19%), Positives = 79/203 (38%), Gaps = 22/203 (10%)
Query: 14 FDLERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRLQQAETMKKKFSSY 73
++ ER+ + E L Q+ + K ++ L + Q++++ Q L + + + S
Sbjct: 302 YEEERRKVVRLEQELVQKTEECKTQAAAYLDL----ENQIREQAQELGVLLSWEPRASGK 357
Query: 74 LGNGF--------QKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPS 125
G+ Q P+D+L S Q +K + A LA + A+D+ K Q
Sbjct: 358 QGSSLRPGGDGMEQGCPKDLLAESTQELKKQQQAAATVNPVLAPKKAEDSAPGKIQY-EV 416
Query: 126 HDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVS 185
H + + P S+ R A ++ + N ++ P +P Q+ S
Sbjct: 417 HGRSQPEEQGPPQSPASETIRKA--------TGQQLTTNGAQTFGPDHADQLPA-GQKES 467
Query: 186 TNTIEQGPSSSPASDSGMACADE 208
+ + P + A G A ++
Sbjct: 468 SQVLGVEPGGTVAEPVGPAAMNQ 490
>gi|224549005 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 49 EQRQLQKELQRLQQAETM-KKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRAL 107
E+RQ Q+EL+R ++ E K++ + +GF +RP+ S + R + + M
Sbjct: 117 EERQRQRELERQKEIEEREKRRKDRHEASGFARRPDP---DSDEDEDYERERRKRSMGGA 173
Query: 108 ATRMAQDTCKSKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSK 167
A + ++P P + +P SQ+++ A P +E+D P
Sbjct: 174 AIAPPTSLVEKDKELPRDF------PYEEDSRPRSQSSKAAI---PPPVYEEQD--RPRS 222
Query: 168 DVDPS 172
PS
Sbjct: 223 PTGPS 227
>gi|14249678 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 49 EQRQLQKELQRLQQAETM-KKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRAL 107
E+RQ Q+EL+R ++ E K++ + +GF +RP+ S + R + + M
Sbjct: 117 EERQRQRELERQKEIEEREKRRKDRHEASGFARRPDP---DSDEDEDYERERRKRSMGGA 173
Query: 108 ATRMAQDTCKSKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSK 167
A + ++P P + +P SQ+++ A P +E+D P
Sbjct: 174 AIAPPTSLVEKDKELPRDF------PYEEDSRPRSQSSKAAI---PPPVYEEQD--RPRS 222
Query: 168 DVDPS 172
PS
Sbjct: 223 PTGPS 227
>gi|82799486 phosphodiesterase 4B isoform 1 [Homo sapiens]
Length = 736
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 18 RKNAKQAEARLDQRLQRLKVICLYH-VKLLTWEQ--RQLQKELQRLQQAETMKKKFSSYL 74
+K A + LD L +L+ I Y V + + R L +EL L + + S Y+
Sbjct: 216 QKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYI 275
Query: 75 GNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMA 112
N F + DV + SP QK R + KK + L T+++
Sbjct: 276 SNTFLDKQNDVEIPSP--TQKDR--EKKKKQQLMTQIS 309
>gi|82799484 phosphodiesterase 4B isoform 3 [Homo sapiens]
Length = 721
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 18 RKNAKQAEARLDQRLQRLKVICLYH-VKLLTWEQ--RQLQKELQRLQQAETMKKKFSSYL 74
+K A + LD L +L+ I Y V + + R L +EL L + + S Y+
Sbjct: 201 QKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYI 260
Query: 75 GNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMA 112
N F + DV + SP QK R + KK + L T+++
Sbjct: 261 SNTFLDKQNDVEIPSP--TQKDR--EKKKKQQLMTQIS 294
>gi|82799482 phosphodiesterase 4B isoform 2 [Homo sapiens]
Length = 564
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 18 RKNAKQAEARLDQRLQRLKVICLYH-VKLLTWEQ--RQLQKELQRLQQAETMKKKFSSYL 74
+K A + LD L +L+ I Y V + + R L +EL L + + S Y+
Sbjct: 44 QKLAMETLEELDWCLDQLETIQTYRSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEYI 103
Query: 75 GNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMA 112
N F + DV + SP QK R + KK + L T+++
Sbjct: 104 SNTFLDKQNDVEIPSP--TQKDR--EKKKKQQLMTQIS 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,759,176
Number of Sequences: 37866
Number of extensions: 610251
Number of successful extensions: 2072
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 2011
Number of HSP's gapped (non-prelim): 133
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.