Search of human proteins with 89886352

Search of human proteins with 89886352

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89886352 hypothetical protein LOC339229 [Homo sapiens]
         (147 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|89886352 hypothetical protein LOC339229 [Homo sapiens]             311   1e-85
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]            33   0.066
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ...    33   0.066
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ...    33   0.066
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]            32   0.15 
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ...    32   0.15 
gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fa...    32   0.19 
gi|113722133 senataxin [Homo sapiens]                                  32   0.25 
gi|33286436 gametogenetin [Homo sapiens]                               31   0.33 
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]             31   0.42 
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]              31   0.42 
gi|239758164 PREDICTED: similar to protein phosphatase 2A 48 kDa...    30   0.72 
gi|239745624 PREDICTED: hypothetical protein XP_002344159 [Homo ...    30   0.72 
gi|239756643 PREDICTED: hypothetical protein [Homo sapiens]            30   0.95 
gi|7657685 late cornified envelope 2B [Homo sapiens]                   30   0.95 
gi|30410047 late cornified envelope 2C [Homo sapiens]                  30   0.95 
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]          30   0.95 
gi|225690502 junctophilin 4 [Homo sapiens]                             29   1.6  
gi|225690500 junctophilin 4 [Homo sapiens]                             29   1.6  
gi|30840978 neuroligin 2 [Homo sapiens]                                29   1.6  
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap...    29   1.6  
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i...    28   2.1  
gi|239757320 PREDICTED: hypothetical protein [Homo sapiens]            28   2.1  
gi|239751827 PREDICTED: hypothetical protein [Homo sapiens]            28   2.1  
gi|239746318 PREDICTED: hypothetical protein XP_002343694 [Homo ...    28   2.1  
gi|38505292 voltage-dependent calcium channel alpha 1G subunit i...    28   2.1  
gi|38505290 voltage-dependent calcium channel alpha 1G subunit i...    28   2.1  
gi|38505288 voltage-dependent calcium channel alpha 1G subunit i...    28   2.1  
gi|38505286 voltage-dependent calcium channel alpha 1G subunit i...    28   2.1  
gi|38505284 voltage-dependent calcium channel alpha 1G subunit i...    28   2.1  

>gi|89886352 hypothetical protein LOC339229 [Homo sapiens]
          Length = 147

 Score =  311 bits (798), Expect = 1e-85
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MLLRRVVEGGRAVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQAPDGRRKFGTD 60
           MLLRRVVEGGRAVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQAPDGRRKFGTD
Sbjct: 1   MLLRRVVEGGRAVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQAPDGRRKFGTD 60

Query: 61  HVEVGSQAGADGTRPPKASLPPELQPPTNCCMSGCPNCVWVEYADRLLQHFQDGGERALA 120
           HVEVGSQAGADGTRPPKASLPPELQPPTNCCMSGCPNCVWVEYADRLLQHFQDGGERALA
Sbjct: 61  HVEVGSQAGADGTRPPKASLPPELQPPTNCCMSGCPNCVWVEYADRLLQHFQDGGERALA 120

Query: 121 ALEEHVADENLKAFLRMEIRLHTRCGG 147
           ALEEHVADENLKAFLRMEIRLHTRCGG
Sbjct: 121 ALEEHVADENLKAFLRMEIRLHTRCGG 147


>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 294

 Score = 33.5 bits (75), Expect = 0.066
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 15/84 (17%)

Query: 12 AVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQAPDGRRKFGTDHVEVGSQAGAD 71
          A++AA  GS     +SPD CQ LPG G  ++   PG  AP      G   + VG      
Sbjct: 12 ALSAAPAGSS---LNSPDPCQLLPGTGWMMR---PGEVAP-----AGGSPLAVGGAFRVS 60

Query: 72 GTRPPKASLPPELQPPTNCCMSGC 95
            RP     PP  + P+    +GC
Sbjct: 61 SPRP----FPPRPERPSRRHRAGC 80


>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
          sapiens]
          Length = 315

 Score = 33.5 bits (75), Expect = 0.066
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 15/84 (17%)

Query: 12 AVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQAPDGRRKFGTDHVEVGSQAGAD 71
          A++AA  GS     +SPD CQ LPG G  ++   PG  AP      G   + VG      
Sbjct: 12 ALSAAPAGSS---LNSPDPCQLLPGTGWMMR---PGEVAP-----AGGSPLAVGGAFRVS 60

Query: 72 GTRPPKASLPPELQPPTNCCMSGC 95
            RP     PP  + P+    +GC
Sbjct: 61 SPRP----FPPRPERPSRRHRAGC 80


>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
          sapiens]
          Length = 315

 Score = 33.5 bits (75), Expect = 0.066
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 15/84 (17%)

Query: 12 AVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQAPDGRRKFGTDHVEVGSQAGAD 71
          A++AA  GS     +SPD CQ LPG G  ++   PG  AP      G   + VG      
Sbjct: 12 ALSAAPAGSS---LNSPDPCQLLPGTGWMMR---PGEVAP-----AGGSPLAVGGAFRVS 60

Query: 72 GTRPPKASLPPELQPPTNCCMSGC 95
            RP     PP  + P+    +GC
Sbjct: 61 SPRP----FPPRPERPSRRHRAGC 80


>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 242

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 36  GGGSFLQRHHPGAQAP-----DGRRKFGTDHVEVGSQAGADGTRPPKASLPPELQPPTNC 90
           GGG+      PG++ P      GRRK G+     G  AG+ G R  KA + P   PP   
Sbjct: 146 GGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRR 205

Query: 91  CMSG 94
             SG
Sbjct: 206 LHSG 209


>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
           sapiens]
          Length = 242

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 36  GGGSFLQRHHPGAQAP-----DGRRKFGTDHVEVGSQAGADGTRPPKASLPPELQPPTNC 90
           GGG+      PG++ P      GRRK G+     G  AG+ G R  KA + P   PP   
Sbjct: 146 GGGARAPGPGPGSRQPLPAGLHGRRKVGSAPDRHGLGAGSAGARGNKAVVGPSPPPPGRR 205

Query: 91  CMSG 94
             SG
Sbjct: 206 LHSG 209


>gi|239751049 PREDICTED: similar to ATPase, Ca++ transporting, fast
           twitch 1 [Homo sapiens]
          Length = 879

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 9   GGRAVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQA----PDGRRKFGT---DH 61
           GGR VA    G+G R        +  PGGG  ++R +PG QA     +   + GT   +H
Sbjct: 190 GGRGVAGCSSGTGVRALWR----EEKPGGGRRVKRRNPGRQAVGHTEEDPPRVGTPWKEH 245

Query: 62  VEVGSQAGA 70
              G Q G+
Sbjct: 246 TGPGPQEGS 254


>gi|113722133 senataxin [Homo sapiens]
          Length = 2677

 Score = 31.6 bits (70), Expect = 0.25
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 13/72 (18%)

Query: 37   GGSFL------QRHHPGAQAPDGRRKFGTDHVEVGS-------QAGADGTRPPKASLPPE 83
            GG FL         HPGA  P G   F   H ++          A     +PP    PP 
Sbjct: 2551 GGIFLWDPQPSSPQHPGATPPTGEPGFPVVHQDLSHIQQPAAVVAALSSHKPPVRGEPPA 2610

Query: 84   LQPPTNCCMSGC 95
              P  + C S C
Sbjct: 2611 ASPEASTCQSKC 2622


>gi|33286436 gametogenetin [Homo sapiens]
          Length = 652

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 46  PGAQAPDGRRKFGTDHVEVGSQAGADGTRPPKA------SLPPELQPPTNCCMSGCPNCV 99
           PGA  P G    G    E G   G   + PP A      +LPP   PP        P   
Sbjct: 296 PGAARPLGEVSRGAQEAEGGDGDGEGCSGPPSAPASQARALPP---PPYTTFPGSKPKFD 352

Query: 100 WVEYADRLLQHFQDGG 115
           WV   D   +HF+  G
Sbjct: 353 WVSAPDGPERHFRFNG 368


>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
          Length = 392

 Score = 30.8 bits (68), Expect = 0.42
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 51  PDGRRKFGTDHVEVGSQAGADGTRPPKASLPPELQPPTN 89
           P  ++ FG D     +  G  G +PP+   PP + PP N
Sbjct: 342 PWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPN 380


>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 30.8 bits (68), Expect = 0.42
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 51  PDGRRKFGTDHVEVGSQAGADGTRPPKASLPPELQPPTN 89
           P  ++ FG D     +  G  G +PP+   PP + PP N
Sbjct: 325 PWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPN 363


>gi|239758164 PREDICTED: similar to protein phosphatase 2A 48 kDa
           regulatory subunit [Homo sapiens]
          Length = 290

 Score = 30.0 bits (66), Expect = 0.72
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 16  AVRGSGARRFSSPDCCQRL-PGGGSFLQ---RHHPGAQAPDGRRKFG 58
           A RG G R    P  C RL PGG   L+   R  PG+++P G R  G
Sbjct: 237 AFRGLGRRLPQGPSLCPRLCPGGPVRLRPRARPSPGSRSPCGARLLG 283


>gi|239745624 PREDICTED: hypothetical protein XP_002344159 [Homo
           sapiens]
          Length = 165

 Score = 30.0 bits (66), Expect = 0.72
 Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 15/90 (16%)

Query: 4   RRVVEGGRAVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQAPDGRRKFGTDHVE 63
           R  V GGRA      G GARR  +     R  GGG        G  AP    + G  H  
Sbjct: 56  RDTVRGGRARPWPAAGMGARRVRAEGA--RAGGGGD-------GYAAPASCERGGGFH-- 104

Query: 64  VGSQAGAD----GTRPPKASLPPELQPPTN 89
            G +A  D       PP+A  PP  +P ++
Sbjct: 105 CGRRARGDPRPWPAPPPRAHWPPRRRPASS 134


>gi|239756643 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 165

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 15/90 (16%)

Query: 4   RRVVEGGRAVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQAPDGRRKFGTDHVE 63
           R  V GGRA      G GARR  +     R  GGG        G  AP    + G  H  
Sbjct: 56  RDTVRGGRARPWPAAGMGARRVRAEGA--RAGGGGD-------GYAAPASCERGGGFH-- 104

Query: 64  VGSQAGAD----GTRPPKASLPPELQPPTN 89
            G +A  D       PP+A  PP  +P ++
Sbjct: 105 CGRRARGDPRPWPAPPPRAHWPPRPRPASS 134


>gi|7657685 late cornified envelope 2B [Homo sapiens]
          Length = 110

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 23  RRFSSPDCCQRLPGGGS 39
           RR  SPDCC+  P GGS
Sbjct: 84  RRHQSPDCCESEPSGGS 100


>gi|30410047 late cornified envelope 2C [Homo sapiens]
          Length = 110

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 23  RRFSSPDCCQRLPGGGS 39
           RR  SPDCC+  P GGS
Sbjct: 84  RRHQSPDCCESEPSGGS 100


>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
          Length = 430

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 10 GRAVAAAVRGSGARRFSSPDCCQRLPGGGSFLQRHHPGAQAPD--GRRKFGTDHVEVGSQ 67
          G   AA +    A R   P C    PG G    R  PG +A    GRR  G+   E G+ 
Sbjct: 7  GADEAALLLAGLALRELEPGCGS--PGRGRRGPRPGPGDEAAPALGRRGKGSGGPEAGAD 64

Query: 68 AGADGTRPPKASLPPEL 84
            + G R P+ +  PEL
Sbjct: 65 GLSRGERGPRRAAVPEL 81


>gi|225690502 junctophilin 4 [Homo sapiens]
          Length = 628

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 32  QRLPGGGSFLQRHH--PGAQAPDGRR-----KFGTDHVEVGSQAGADGTRPPKASLPPEL 84
           +R P  G F +R     G +A  GRR     K G+   EV S+ G+ G    +AS PP  
Sbjct: 210 KRTPAAGGFFRRSLLLSGLRA-GGRRSSLGSKRGSLRSEVSSEVGSTGPPGSEASGPPAA 268

Query: 85  QPP 87
            PP
Sbjct: 269 APP 271


>gi|225690500 junctophilin 4 [Homo sapiens]
          Length = 628

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 32  QRLPGGGSFLQRHH--PGAQAPDGRR-----KFGTDHVEVGSQAGADGTRPPKASLPPEL 84
           +R P  G F +R     G +A  GRR     K G+   EV S+ G+ G    +AS PP  
Sbjct: 210 KRTPAAGGFFRRSLLLSGLRA-GGRRSSLGSKRGSLRSEVSSEVGSTGPPGSEASGPPAA 268

Query: 85  QPP 87
            PP
Sbjct: 269 APP 271


>gi|30840978 neuroligin 2 [Homo sapiens]
          Length = 835

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 2/21 (9%)

Query: 68  AGADGTR--PPKASLPPELQP 86
           AGA GTR  PP A+LPPE +P
Sbjct: 635 AGAPGTRRPPPPATLPPEPEP 655


>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
          sapiens]
          Length = 735

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 42 QRHHPGAQAPDGRRKFGTDHVEVGSQAGADGTRPPKASLPP 82
          +R HP AQ P+            GSQAGA+G   P+AS  P
Sbjct: 28 ERGHP-AQRPEPSPPEPEPQAPEGSQAGAEGPSSPEASRSP 67


>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
            isoform 1 [Homo sapiens]
          Length = 2377

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 31   CQRLPGGGSFLQRHHPGAQA---PDGRRKFGTDHVEVGSQA-GADGTRPPKASLPPE--L 84
            CQR P      QR H  A +      +   GTD   +G Q  G  G+RP K   PP   +
Sbjct: 2254 CQRRPTSWLDEQRRHSIAVSCLDSGSQPHLGTDPSNLGGQPLGGPGSRPKKKLSPPSITI 2313

Query: 85   QPP 87
             PP
Sbjct: 2314 DPP 2316


>gi|239757320 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 36  GGGSFLQRHHPGAQAPD----GRRKF---GTDHVEVGSQAGADGTRPPKASLPPELQPPT 88
           GGG  ++R   G  AP      R +F   G  +++ G  +     +P KA+     Q P 
Sbjct: 39  GGGCIVRRERHGMLAPGIYRTARERFRNAGKSNLQSGQMSSPHPAKPQKANQMVSEQQPV 98

Query: 89  --NCCMSGCPNC 98
              CC    P C
Sbjct: 99  GCECCPLSVPFC 110


>gi|239751827 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 36  GGGSFLQRHHPGAQAPD----GRRKF---GTDHVEVGSQAGADGTRPPKASLPPELQPPT 88
           GGG  ++R   G  AP      R +F   G  +++ G  +     +P KA+     Q P 
Sbjct: 39  GGGCIVRRERHGMLAPGIYRTARERFRNAGKSNLQSGQMSSPHPAKPQKANQMVSEQQPV 98

Query: 89  --NCCMSGCPNC 98
              CC    P C
Sbjct: 99  GCECCPLSVPFC 110


>gi|239746318 PREDICTED: hypothetical protein XP_002343694 [Homo
           sapiens]
          Length = 194

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 36  GGGSFLQRHHPGAQAPD----GRRKF---GTDHVEVGSQAGADGTRPPKASLPPELQPPT 88
           GGG  ++R   G  AP      R +F   G  +++ G  +     +P KA+     Q P 
Sbjct: 39  GGGCIVRRERHGMLAPGIYRTARERFRNAGKSNLQSGQMSSPHPAKPQKANQMVSEQQPV 98

Query: 89  --NCCMSGCPNC 98
              CC    P C
Sbjct: 99  GCECCPLSVPFC 110


>gi|38505292 voltage-dependent calcium channel alpha 1G subunit
            isoform 3 [Homo sapiens]
          Length = 2343

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 31   CQRLPGGGSFLQRHHPGAQA---PDGRRKFGTDHVEVGSQA-GADGTRPPKASLPPE--L 84
            CQR P      QR H  A +      +   GTD   +G Q  G  G+RP K   PP   +
Sbjct: 2220 CQRRPTSWLDEQRRHSIAVSCLDSGSQPHLGTDPSNLGGQPLGGPGSRPKKKLSPPSITI 2279

Query: 85   QPP 87
             PP
Sbjct: 2280 DPP 2282


>gi|38505290 voltage-dependent calcium channel alpha 1G subunit
            isoform 13 [Homo sapiens]
          Length = 2243

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 31   CQRLPGGGSFLQRHHPGAQA---PDGRRKFGTDHVEVGSQA-GADGTRPPKASLPPE--L 84
            CQR P      QR H  A +      +   GTD   +G Q  G  G+RP K   PP   +
Sbjct: 2120 CQRRPTSWLDEQRRHSIAVSCLDSGSQPHLGTDPSNLGGQPLGGPGSRPKKKLSPPSITI 2179

Query: 85   QPP 87
             PP
Sbjct: 2180 DPP 2182


>gi|38505288 voltage-dependent calcium channel alpha 1G subunit
            isoform 12 [Homo sapiens]
          Length = 2250

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 31   CQRLPGGGSFLQRHHPGAQA---PDGRRKFGTDHVEVGSQA-GADGTRPPKASLPPE--L 84
            CQR P      QR H  A +      +   GTD   +G Q  G  G+RP K   PP   +
Sbjct: 2127 CQRRPTSWLDEQRRHSIAVSCLDSGSQPHLGTDPSNLGGQPLGGPGSRPKKKLSPPSITI 2186

Query: 85   QPP 87
             PP
Sbjct: 2187 DPP 2189


>gi|38505286 voltage-dependent calcium channel alpha 1G subunit
            isoform 10 [Homo sapiens]
          Length = 2266

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 31   CQRLPGGGSFLQRHHPGAQA---PDGRRKFGTDHVEVGSQA-GADGTRPPKASLPPE--L 84
            CQR P      QR H  A +      +   GTD   +G Q  G  G+RP K   PP   +
Sbjct: 2143 CQRRPTSWLDEQRRHSIAVSCLDSGSQPHLGTDPSNLGGQPLGGPGSRPKKKLSPPSITI 2202

Query: 85   QPP 87
             PP
Sbjct: 2203 DPP 2205


>gi|38505284 voltage-dependent calcium channel alpha 1G subunit
            isoform 4 [Homo sapiens]
          Length = 2332

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 31   CQRLPGGGSFLQRHHPGAQA---PDGRRKFGTDHVEVGSQA-GADGTRPPKASLPPE--L 84
            CQR P      QR H  A +      +   GTD   +G Q  G  G+RP K   PP   +
Sbjct: 2209 CQRRPTSWLDEQRRHSIAVSCLDSGSQPHLGTDPSNLGGQPLGGPGSRPKKKLSPPSITI 2268

Query: 85   QPP 87
             PP
Sbjct: 2269 DPP 2271


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,372,201
Number of Sequences: 37866
Number of extensions: 406145
Number of successful extensions: 1473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 96
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.