Search of human proteins with 63047871

Search of human proteins with 63047871

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|63047871 hypothetical protein LOC122525 [Homo sapiens]
         (310 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|63047871 hypothetical protein LOC122525 [Homo sapiens]             652   0.0  
gi|224451131 eyes shut homolog isoform 2 [Homo sapiens]                31   1.2  
gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]                31   1.2  
gi|38093661 eyes shut homolog isoform 3 [Homo sapiens]                 31   1.2  
gi|23503283 TBC1 domain family, member 21 [Homo sapiens]               30   3.6  
gi|23957700 zinc finger protein 114 [Homo sapiens]                     30   3.6  
gi|253735700 5-hydroxytryptamine (serotonin) receptor 3A isoform...    29   6.1  
gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform...    29   6.1  
gi|253735691 5-hydroxytryptamine (serotonin) receptor 3A isoform...    29   6.1  
gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]         29   6.1  

>gi|63047871 hypothetical protein LOC122525 [Homo sapiens]
          Length = 310

 Score =  652 bits (1682), Expect = 0.0
 Identities = 310/310 (100%), Positives = 310/310 (100%)

Query: 1   MKTLFEEIKASIKNNYNQDRSFCRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTID 60
           MKTLFEEIKASIKNNYNQDRSFCRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTID
Sbjct: 1   MKTLFEEIKASIKNNYNQDRSFCRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTID 60

Query: 61  GFLMLLYVILNENENFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKS 120
           GFLMLLYVILNENENFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKS
Sbjct: 61  GFLMLLYVILNENENFPRELSLHFGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKS 120

Query: 121 EVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTININPPQEI 180
           EVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTININPPQEI
Sbjct: 121 EVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTININPPQEI 180

Query: 181 PHGNLIRLAVNELFCSKIELCEEHGCGGLREFSQRIFCHGAPPFVVLNMQHWKSEDLAYV 240
           PHGNLIRLAVNELFCSKIELCEEHGCGGLREFSQRIFCHGAPPFVVLNMQHWKSEDLAYV
Sbjct: 181 PHGNLIRLAVNELFCSKIELCEEHGCGGLREFSQRIFCHGAPPFVVLNMQHWKSEDLAYV 240

Query: 241 PYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIGGHWMHYDGLRNVNLILLNKPPEFLLLS 300
           PYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIGGHWMHYDGLRNVNLILLNKPPEFLLLS
Sbjct: 241 PYYLDLSDHKYLLEGATLFNKEEHHYSAAFQIGGHWMHYDGLRNVNLILLNKPPEFLLLS 300

Query: 301 SLVYIRATEK 310
           SLVYIRATEK
Sbjct: 301 SLVYIRATEK 310


>gi|224451131 eyes shut homolog isoform 2 [Homo sapiens]
          Length = 619

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 171 TININPPQEIPHGNLIRLAVNELFCSKI---ELCEEHGCGGLREFSQRIFCHGAPPF 224
           T+  + P   P G  + + V + FC +    E C  HG      +S+   CH  PPF
Sbjct: 150 TVMASGPSPCPLGLRLNVTVKQQFCQESLSSEFCSGHGKCLSEAWSKTYSCHCQPPF 206


>gi|224451128 eyes shut homolog isoform 1 [Homo sapiens]
          Length = 3144

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 171 TININPPQEIPHGNLIRLAVNELFCSKI---ELCEEHGCGGLREFSQRIFCHGAPPF 224
           T+  + P   P G  + + V + FC +    E C  HG      +S+   CH  PPF
Sbjct: 150 TVMASGPSPCPLGLRLNVTVKQQFCQESLSSEFCSGHGKCLSEAWSKTYSCHCQPPF 206


>gi|38093661 eyes shut homolog isoform 3 [Homo sapiens]
          Length = 594

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 171 TININPPQEIPHGNLIRLAVNELFCSKI---ELCEEHGCGGLREFSQRIFCHGAPPF 224
           T+  + P   P G  + + V + FC +    E C  HG      +S+   CH  PPF
Sbjct: 150 TVMASGPSPCPLGLRLNVTVKQQFCQESLSSEFCSGHGKCLSEAWSKTYSCHCQPPF 206


>gi|23503283 TBC1 domain family, member 21 [Homo sapiens]
          Length = 336

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 111 DKMEKQQYKSEVHKASLIIDLFGNEHDNFTKNLENLMSTIQESY 154
           D M ++ YK+       I  L  N H NFT+   N+   IQ+ Y
Sbjct: 87  DSMRRKNYKALCQMYEKIQPLLENLHRNFTETRNNIARDIQKIY 130


>gi|23957700 zinc finger protein 114 [Homo sapiens]
          Length = 417

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 14/57 (24%)

Query: 148 STIQESYCSNWRCPTRVQEDQQRTININPPQEIPHGNLIRLAVNELFCSKIELCEEH 204
           ST++E    +WRCP   +  +Q   N+ PP   P          E   S + +CE+H
Sbjct: 84  STLRE----DWRCPKTEEPHRQGVNNVKPPAVAP----------EKDESPVSICEDH 126


>gi|253735700 5-hydroxytryptamine (serotonin) receptor 3A isoform b
           precursor [Homo sapiens]
          Length = 484

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 96  MDTYSFTTVKLLWIWDKMEKQQYK--SEVHKASLIIDLFGNEHDNFTKNLENLMSTIQES 153
           +D      +  ++I  + E Q YK    V   SL I  F  +  N +    + + TIQ+ 
Sbjct: 132 VDVGKSPNIPYVYIRHQGEVQNYKPLQVVTACSLDIYNFPFDVQNCSLTFTSWLHTIQDI 191

Query: 154 YCSNWRCPTRVQEDQQRTIN 173
             S WR P +V+ D+   +N
Sbjct: 192 NISLWRLPEKVKSDRSVFMN 211


>gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform a
           precursor [Homo sapiens]
          Length = 516

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 96  MDTYSFTTVKLLWIWDKMEKQQYK--SEVHKASLIIDLFGNEHDNFTKNLENLMSTIQES 153
           +D      +  ++I  + E Q YK    V   SL I  F  +  N +    + + TIQ+ 
Sbjct: 132 VDVGKSPNIPYVYIRHQGEVQNYKPLQVVTACSLDIYNFPFDVQNCSLTFTSWLHTIQDI 191

Query: 154 YCSNWRCPTRVQEDQQRTIN 173
             S WR P +V+ D+   +N
Sbjct: 192 NISLWRLPEKVKSDRSVFMN 211


>gi|253735691 5-hydroxytryptamine (serotonin) receptor 3A isoform c
           [Homo sapiens]
          Length = 463

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 96  MDTYSFTTVKLLWIWDKMEKQQYK--SEVHKASLIIDLFGNEHDNFTKNLENLMSTIQES 153
           +D      +  ++I  + E Q YK    V   SL I  F  +  N +    + + TIQ+ 
Sbjct: 111 VDVGKSPNIPYVYIRHQGEVQNYKPLQVVTACSLDIYNFPFDVQNCSLTFTSWLHTIQDI 170

Query: 154 YCSNWRCPTRVQEDQQRTIN 173
             S WR P +V+ D+   +N
Sbjct: 171 NISLWRLPEKVKSDRSVFMN 190


>gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]
          Length = 156

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 104 VKLLWIWDKMEKQQYKSEVHKASLIIDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTR 163
           +KLL    ++ +     ++  A  I+ LF    +NF +NL+NL++ I   + S WR  T 
Sbjct: 16  LKLLQALHRLTRLVAFRDLSSAEAILALFP---ENFHQNLKNLLTKIILEHVSTWR--TE 70

Query: 164 VQEDQ 168
            Q +Q
Sbjct: 71  AQANQ 75


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,141,072
Number of Sequences: 37866
Number of extensions: 516947
Number of successful extensions: 984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 10
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.