Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PAGE1 Sequence: fasta or formatted (146aa) NCBI GI: 58761528
Description:

P antigen family, member 1

Referenced in:

Melanoma Antigen Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          7           2
 C cysteine            2.1          3           1
 D aspartate           7.5         11           1
 E glutamate          18.5         27           2
 F phenylalanine       0.7          1           1
 G glycine             8.2         12           1
 H histidine           0.7          1           1
 I isoleucine          1.4          2           1
 K lysine              3.4          5           1
 L leucine             5.5          8           1
 M methionine          2.1          3           1
 N asparagine          1.4          2           1
 P proline            11.0         16           1
 Q glutamine           8.9         13           1
 R arginine            6.2          9           3
 S serine              7.5         11           2
 T threonine           4.1          6           1
 V valine              4.8          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   P antigen family, member 1 
GAGE10                0.308   G antigen 10 
GAGE2D                0.264   G antigen 2D 
GAGE8                 0.264   G antigen 8 
GAGE1                 0.261   G antigen 1 isoform 2 
GAGE2E                0.261   G antigen 2E 
GAGE13                0.257   G antigen 13 
GAGE2B                0.257   G antigen 2B 
GAGE2C                0.257   G antigen 2 
GAGE2A                0.250   G antigen 2A 
GAGE5                 0.250   G antigen 5 
GAGE4                 0.250   G antigen 4 
GAGE6                 0.250   G antigen 6 
GAGE12J               0.243   G antigen 12J 
GAGE12C               0.239   G antigen 12C 
GAGE12G               0.239   G antigen 12G 
GAGE12D               0.239   G antigen 12D 
GAGE12E               0.239   G antigen 12E 
GAGE7                 0.239   G antigen 7 
GAGE12F               0.239   G antigen 12F 
GAGE12B               0.239   G antigen 12B 
GAGE12I               0.239   G antigen 12I 
GAGE12H               0.236   G antigen 12H 
GAGE1                 0.232   G antigen 1 isoform 1 
XAGE3                 0.188   XAGE-3 protein 
XAGE3                 0.188   XAGE-3 protein 
XAGE5                 0.163   X antigen family, member 5 
XAGE2B                0.141   X antigen family, member 2-like 
XAGE2                 0.141   XAGE-2 protein 
PAGE3                 0.116   P antigen family, member 3 (prostate associated) [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press