Guide to the Human Genome
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Search of human proteins with 55749998

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55749998 deiodinase, iodothyronine, type II isoform b [Homo
sapiens]
         (309 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55749998 deiodinase, iodothyronine, type II isoform b [Homo s...   617   e-177
gi|7549803 deiodinase, iodothyronine, type II isoform a [Homo sa...   526   e-149
gi|7549805 deiodinase, iodothyronine, type II isoform a [Homo sa...   526   e-149
gi|4557522 deiodinase, iodothyronine, type I isoform a [Homo sap...   140   2e-33
gi|55750011 deiodinase, iodothyronine, type III [Homo sapiens]        139   3e-33
gi|47132603 deiodinase, iodothyronine, type I isoform b [Homo sa...   131   9e-31
gi|89357938 deiodinase, iodothyronine, type I isoform d [Homo sa...    72   5e-13
gi|89357935 deiodinase, iodothyronine, type I isoform c [Homo sa...    72   5e-13
gi|55743114 leucine rich repeat containing 49 [Homo sapiens]           32   0.71 
gi|169162069 PREDICTED: hypothetical protein [Homo sapiens]            31   1.6  
gi|169162780 PREDICTED: hypothetical protein [Homo sapiens]            31   1.6  
gi|52627199 olfactory receptor, family 4, subfamily C, member 15...    31   1.6  
gi|55749600 spire homolog 2 [Homo sapiens]                             30   3.5  
gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]    29   4.6  
gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]                 29   4.6  
gi|18860918 xylulokinase [Homo sapiens]                                28   7.9  
gi|122937516 aldo-keto reductase family 1, member B10-like [Homo...    28   7.9  

>gi|55749998 deiodinase, iodothyronine, type II isoform b [Homo
           sapiens]
          Length = 309

 Score =  617 bits (1592), Expect = e-177
 Identities = 309/309 (100%), Positives = 309/309 (100%)

Query: 1   MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60
           MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL
Sbjct: 1   MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60

Query: 61  RCVWKSFLLDAYKQLNCPPSGFSKDGHILULVYEAYKSRLLVYSHLDLWMVKLGEDAPNS 120
           RCVWKSFLLDAYKQLNCPPSGFSKDGHIL LVYEAYKSRLLVYSHLDLWMVKLGEDAPNS
Sbjct: 61  RCVWKSFLLDAYKQLNCPPSGFSKDGHILULVYEAYKSRLLVYSHLDLWMVKLGEDAPNS 120

Query: 121 SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFR 180
           SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSAT PPFTSQLPAFR
Sbjct: 121 SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFR 180

Query: 181 KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSL 240
           KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSL
Sbjct: 181 KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSL 240

Query: 241 PPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSK 300
           PPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSK
Sbjct: 241 PPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSK 300

Query: 301 RUKKTRLAG 309
           R KKTRLAG
Sbjct: 301 RUKKTRLAG 309


>gi|7549803 deiodinase, iodothyronine, type II isoform a [Homo
           sapiens]
          Length = 273

 Score =  526 bits (1354), Expect = e-149
 Identities = 273/309 (88%), Positives = 273/309 (88%), Gaps = 36/309 (11%)

Query: 1   MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60
           MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL
Sbjct: 1   MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60

Query: 61  RCVWKSFLLDAYKQLNCPPSGFSKDGHILULVYEAYKSRLLVYSHLDLWMVKLGEDAPNS 120
           RCVWKSFLLDAYKQ                                    VKLGEDAPNS
Sbjct: 61  RCVWKSFLLDAYKQ------------------------------------VKLGEDAPNS 84

Query: 121 SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFR 180
           SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSAT PPFTSQLPAFR
Sbjct: 85  SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFR 144

Query: 181 KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSL 240
           KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSL
Sbjct: 145 KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSL 204

Query: 241 PPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSK 300
           PPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSK
Sbjct: 205 PPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSK 264

Query: 301 RUKKTRLAG 309
           R KKTRLAG
Sbjct: 265 RUKKTRLAG 273


>gi|7549805 deiodinase, iodothyronine, type II isoform a [Homo
           sapiens]
          Length = 273

 Score =  526 bits (1354), Expect = e-149
 Identities = 273/309 (88%), Positives = 273/309 (88%), Gaps = 36/309 (11%)

Query: 1   MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60
           MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL
Sbjct: 1   MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60

Query: 61  RCVWKSFLLDAYKQLNCPPSGFSKDGHILULVYEAYKSRLLVYSHLDLWMVKLGEDAPNS 120
           RCVWKSFLLDAYKQ                                    VKLGEDAPNS
Sbjct: 61  RCVWKSFLLDAYKQ------------------------------------VKLGEDAPNS 84

Query: 121 SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFR 180
           SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSAT PPFTSQLPAFR
Sbjct: 85  SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFR 144

Query: 181 KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSL 240
           KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSL
Sbjct: 145 KLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSL 204

Query: 241 PPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSK 300
           PPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSK
Sbjct: 205 PPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSK 264

Query: 301 RUKKTRLAG 309
           R KKTRLAG
Sbjct: 265 RUKKTRLAG 273


>gi|4557522 deiodinase, iodothyronine, type I isoform a [Homo
           sapiens]
          Length = 249

 Score =  140 bits (352), Expect = 2e-33
 Identities = 79/185 (42%), Positives = 107/185 (57%), Gaps = 25/185 (13%)

Query: 112 KLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPP 171
           +LG  APN  VV +S                  G  C++ +F    RPLV+NFGS T P 
Sbjct: 87  ELGGLAPNCPVVRLS------------------GQRCNIWEFMQGNRPLVLNFGSCTUPS 128

Query: 172 FTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAA 231
           F  +   F++L+E+FSS+ADFL++YI+EAH SDGWA       + +++ HQN +DR  AA
Sbjct: 129 FMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKN----NMDIRNHQNLQDRLQAA 184

Query: 232 QQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVR 291
             LL R    PQC VV D M N ++  Y    ER+ I+Q  +I Y G  GP++YN +EVR
Sbjct: 185 HLLLAR---SPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEVR 241

Query: 292 HWLEK 296
             LEK
Sbjct: 242 AVLEK 246


>gi|55750011 deiodinase, iodothyronine, type III [Homo sapiens]
          Length = 278

 Score =  139 bits (350), Expect = 3e-33
 Identities = 100/290 (34%), Positives = 144/290 (49%), Gaps = 49/290 (16%)

Query: 12  LQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDA 71
           L + P F      L L D + + KH    L R +  + E    L SEG            
Sbjct: 20  LVLFPRFLGTAFMLWLLDFLCIRKH---FLGRRRRGQPEPEVELNSEGEEV--------- 67

Query: 72  YKQLNCPPSGFSKDGHILUL-----VYEAYKSRLLVYSHLDLWMVKLGEDAPNSSVVHVS 126
               + PP   S D  +  L     V+   K      +H        G  APNS VV   
Sbjct: 68  --PPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAHE-------GGPAPNSEVV--- 115

Query: 127 STEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEF 186
                    +G Q +       H+LD+A   RPLV+NFGS T PPF +++ AF++LV ++
Sbjct: 116 -------LPDGFQSQ-------HILDYAQGNRPLVLNFGSCTUPPFMARMSAFQRLVTKY 161

Query: 187 SSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRV 246
               DFL++YI+EAHPSDGW +  DS   + + +H++ EDR +AA+ L +     P C +
Sbjct: 162 QRDVDFLIIYIEEAHPSDGW-VTTDS--PYIIPQHRSLEDRVSAARVLQQG---APGCAL 215

Query: 247 VADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEK 296
           V D M N+++ AYG  FER+ ++Q   I Y GG+GP  Y + E+R WLE+
Sbjct: 216 VLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQVSELRTWLER 265


>gi|47132603 deiodinase, iodothyronine, type I isoform b [Homo
           sapiens]
          Length = 185

 Score =  131 bits (329), Expect = 9e-31
 Identities = 68/139 (48%), Positives = 91/139 (65%), Gaps = 7/139 (5%)

Query: 158 RPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFE 217
           RPLV+NFGS T P F  +   F++L+E+FSS+ADFL++YI+EAH SDGWA       + +
Sbjct: 51  RPLVLNFGSCTUPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKN----NMD 106

Query: 218 VKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYL 277
           ++ HQN +DR  AA  LL R    PQC VV D M N ++  Y    ER+ I+Q  +I Y 
Sbjct: 107 IRNHQNLQDRLQAAHLLLAR---SPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK 163

Query: 278 GGKGPFSYNLQEVRHWLEK 296
           G  GP++YN +EVR  LEK
Sbjct: 164 GKSGPWNYNPEEVRAVLEK 182


>gi|89357938 deiodinase, iodothyronine, type I isoform d [Homo
           sapiens]
          Length = 161

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 18/92 (19%)

Query: 112 KLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPP 171
           +LG  APN  VV +S                  G  C++ +F    RPLV+NFGS T P 
Sbjct: 87  ELGGLAPNCPVVRLS------------------GQRCNIWEFMQGNRPLVLNFGSCTUPS 128

Query: 172 FTSQLPAFRKLVEEFSSVADFLLVYIDEAHPS 203
           F  +   F++L+E+FSS+ADFL++YI+EAH S
Sbjct: 129 FMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS 160


>gi|89357935 deiodinase, iodothyronine, type I isoform c [Homo
           sapiens]
          Length = 201

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 7/93 (7%)

Query: 204 DGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAF 263
           DGWA   +     +++ HQN +DR  AA  LL R    PQC VV D M N ++  Y    
Sbjct: 113 DGWAFKNN----MDIRNHQNLQDRLQAAHLLLAR---SPQCPVVVDTMQNQSSQLYAALP 165

Query: 264 ERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEK 296
           ER+ I+Q  +I Y G  GP++YN +EVR  LEK
Sbjct: 166 ERLYIIQEGRILYKGKSGPWNYNPEEVRAVLEK 198


>gi|55743114 leucine rich repeat containing 49 [Homo sapiens]
          Length = 686

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 16/62 (25%), Positives = 32/62 (51%)

Query: 240 LPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFS 299
           +P + R V+ R  NN N    +  +   + ++ K+ +   K   S+  + ++H LE+N+S
Sbjct: 2   IPGKYRSVSGRAANNVNCGLHLVIQTSSLPEKNKVEFKLNKDTSSFPGRLLQHDLERNYS 61

Query: 300 KR 301
            R
Sbjct: 62  SR 63


>gi|169162069 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 530

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 115 EDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTS 174
           +D   SSV+ + S  G     +GT+ K             SP  P+  NF S   PP TS
Sbjct: 160 QDQGRSSVLKLISRRGRSTVNSGTKNKNN-----------SPLAPIFFNFHSLRNPPITS 208

Query: 175 QLPAFRKL 182
             P  R +
Sbjct: 209 LAPTTRHI 216


>gi|169162780 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 530

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 115 EDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTS 174
           +D   SSV+ + S  G     +GT+ K             SP  P+  NF S   PP TS
Sbjct: 160 QDQGRSSVLKLISRRGRSTVNSGTKNKNN-----------SPLAPIFFNFHSLRNPPITS 208

Query: 175 QLPAFRKL 182
             P  R +
Sbjct: 209 LAPTTRHI 216


>gi|52627199 olfactory receptor, family 4, subfamily C, member 15
           [Homo sapiens]
          Length = 370

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 30  SVILLKHVVLLLS-RSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQLNCPPSGFSKD 85
           S++L+ + V+LLS R+ S+ G W+ + T      V   F +        PPS FS D
Sbjct: 265 SLLLVSYAVILLSLRTHSSEGRWKALSTCGSHIAVVILFFVPCIFVYTRPPSAFSLD 321


>gi|55749600 spire homolog 2 [Homo sapiens]
          Length = 714

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 154 ASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSS 213
           + P  PL+ N GS+   P  S  P  + L  EFS   + L + ++E        +  +  
Sbjct: 495 SDPSHPLLSNRGSSGDRPEASMTPDAKHLWLEFSHPVESLALTVEEVMDVRRVLVKAEME 554

Query: 214 LSFEVKKHQNQEDR---CAAAQQLLERFSLPPQC 244
              + K+  +   +   C   +     FS PP C
Sbjct: 555 KFLQNKELFSSLKKGKICCCCRAKFPLFSWPPSC 588


>gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]
          Length = 1356

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 210  GDSSLSFEVK-KHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNA---NIAYGVAFE- 264
            G  S+S EV+ + Q QE+R ++ Q   +  SLP Q R  A  +  ++   N + G  F+ 
Sbjct: 1193 GRHSVSVEVQMQRQRQEERESSQQAQRQYSSLPRQSRKNASSVSQDSWEQNYSPGEGFQS 1252

Query: 265  -----RVCIVQRQKIAYLGGKG 281
                 R    Q  +  YLGG G
Sbjct: 1253 AKENPRYSSYQGSRNGYLGGHG 1274


>gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]
          Length = 804

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 172 FTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLS 215
           FTS  P    +V + + VAD +L  +D   P +GW   GD  LS
Sbjct: 135 FTSARPGDLHVVLDMAKVADTILFLLD---PLEGWDSTGDYCLS 175


>gi|18860918 xylulokinase [Homo sapiens]
          Length = 536

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 229 AAAQQLLERFSLPPQCRVVADRMDNNANIA 258
           A +   ++R+  PP C+VVA   DN A++A
Sbjct: 257 AISSYYVQRYGFPPGCKVVAFTGDNPASLA 286


>gi|122937516 aldo-keto reductase family 1, member B10-like [Homo
           sapiens]
          Length = 316

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 17/178 (9%)

Query: 91  LVYEAYKSRL--LVYSHLDLWMVKLGEDAPNSSVVHVSSTEGGDNSGNGT--------QE 140
           LV +A++  L  L  S+LD++++   +             +G   SG GT        +E
Sbjct: 88  LVRKAFEKTLKDLKLSYLDVYLIHWPQGFKTGDDFFPKDDKGNMISGKGTFLDAWEAMEE 147

Query: 141 KIAEGATCHL--LDFASPERPLVVNFGSATUPPFTSQLPAF-----RKLVEEFSSVADFL 193
            + EG    L   +F   +   ++N       P T+Q+         KL++   S    +
Sbjct: 148 LVDEGLVKALGVSNFNHFQIERLLNKPGLKYKPVTNQVECHPYLTQEKLIQYCHSKGITV 207

Query: 194 LVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRM 251
             Y     P   WA P D SL  + K  +          Q+L RF +     V+   M
Sbjct: 208 TAYSPLGSPDRPWAKPEDPSLLEDPKIKEIAAKHKKTTAQVLIRFHIQRNVTVIPKSM 265


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,830,232
Number of Sequences: 37866
Number of extensions: 508396
Number of successful extensions: 1181
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 17
length of query: 309
length of database: 18,247,518
effective HSP length: 102
effective length of query: 207
effective length of database: 14,385,186
effective search space: 2977733502
effective search space used: 2977733502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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