Guide to the Human Genome
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Search of human proteins with 54792065

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
         (101 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre...   206   2e-54
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec...   206   2e-54
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre...   152   7e-38
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens]     96   5e-21
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre...    93   5e-20
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]      79   6e-16
gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre...    58   1e-09
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h...    52   1e-07
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif...    50   4e-07
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ...    50   4e-07
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ...    50   4e-07
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif...    50   4e-07
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ...    47   4e-06
gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ...    47   4e-06
gi|46447823 nuclear factor of activated T-cells, cytoplasmic, ca...    42   8e-05
gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]             40   3e-04
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]             40   3e-04
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]             40   3e-04
gi|169790971 parkin isoform 2 [Homo sapiens]                           40   5e-04
gi|169790969 parkin isoform 1 [Homo sapiens]                           40   5e-04
gi|223972685 IQ motif and ubiquitin domain containing [Homo sapi...    37   0.004
gi|169790973 parkin isoform 3 [Homo sapiens]                           34   0.022
gi|5453760 neural precursor cell expressed, developmentally down...    33   0.048
gi|67191208 ubiquitin C [Homo sapiens]                                 33   0.048
gi|11024714 ubiquitin B precursor [Homo sapiens]                       33   0.063
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom...    33   0.063
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ...    33   0.063
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s...    33   0.063
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ...    33   0.063
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]           30   0.41 

>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
           precursor [Homo sapiens]
          Length = 101

 Score =  206 bits (525), Expect = 2e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
           MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
Sbjct: 1   MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60

Query: 61  SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 101
           SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
Sbjct: 61  SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 101


>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
           precursor [Homo sapiens]
          Length = 101

 Score =  206 bits (525), Expect = 2e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
           MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
Sbjct: 1   MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60

Query: 61  SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 101
           SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
Sbjct: 61  SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 101


>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
           precursor [Homo sapiens]
          Length = 76

 Score =  152 bits (383), Expect = 7e-38
 Identities = 73/73 (100%), Positives = 73/73 (100%)

Query: 29  QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 88
           QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI
Sbjct: 4   QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 63

Query: 89  EVYQEQTGGHSTV 101
           EVYQEQTGGHSTV
Sbjct: 64  EVYQEQTGGHSTV 76


>gi|48928058 small ubiquitin-like modifier protein 3 [Homo
          sapiens]
          Length = 103

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 5  EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
          E KP     G K E ++I LKV GQD S + FK+K  T L KL ++YC+RQG+ M  +RF
Sbjct: 3  EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59

Query: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
           F+GQ I +  TP +L ME+ED I+V+Q+QTGG
Sbjct: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92


>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
          precursor [Homo sapiens]
          Length = 95

 Score = 92.8 bits (229), Expect = 5e-20
 Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 4/97 (4%)

Query: 1  MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
          M+D++ K   +     +  ++I LKV GQD S + FK+K  T L KL ++YC+RQG+ M 
Sbjct: 1  MADEKPKEGVKT----ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR 56

Query: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
           +RF F+GQ I +  TP +L ME+ED I+V+Q+QTGG
Sbjct: 57 QIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93


>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
          Length = 95

 Score = 79.3 bits (194), Expect = 6e-16
 Identities = 36/81 (44%), Positives = 53/81 (65%)

Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
          +   +I LKV GQD S + FK+K  T L KL ++YC+ +G+ +  +RF F GQ I+    
Sbjct: 13 ENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRFRFGGQPISGTDK 72

Query: 77 PKELGMEEEDVIEVYQEQTGG 97
          P +L ME+ED I+V+Q+ TGG
Sbjct: 73 PAQLEMEDEDTIDVFQQPTGG 93


>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
          precursor [Homo sapiens]
          Length = 71

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 28/97 (28%)

Query: 1  MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
          M+D++ K   +     +  ++I LKV GQD S + FK+K  T L KL ++YC+RQ     
Sbjct: 1  MADEKPKEGVKT----ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ----- 51

Query: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
                             L ME+ED I+V+Q+QTGG
Sbjct: 52 -------------------LEMEDEDTIDVFQQQTGG 69


>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
          homolog 2 [Homo sapiens]
          Length = 70

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 24/84 (28%)

Query: 14 GDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD 73
          G K +  +I LKV+GQ  S + FK+K  T L KL ++YC+ Q                  
Sbjct: 9  GVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQ------------------ 50

Query: 74 NHTPKELGMEEEDVIEVYQEQTGG 97
                L ME ED I+V+Q+Q GG
Sbjct: 51 ------LEMENEDTIDVFQQQMGG 68


>gi|239754793 PREDICTED: similar to Small ubiquitin-related
          modifier 2 [Homo sapiens]
          Length = 103

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)

Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
          +  ++I LKV+GQD S + FK+K  T L KL  +YC  Q                     
Sbjct: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51

Query: 77 PKELGMEEEDVIEVYQEQTG 96
             L ME+E  I+V+Q+QTG
Sbjct: 52 ---LEMEDEGTIDVFQQQTG 68


>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
          sapiens]
          Length = 103

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)

Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
          +  ++I LKV+GQD S + FK+K  T L KL  +YC  Q                     
Sbjct: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51

Query: 77 PKELGMEEEDVIEVYQEQTG 96
             L ME+E  I+V+Q+QTG
Sbjct: 52 ---LEMEDEGTIDVFQQQTG 68


>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
          sapiens]
          Length = 103

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)

Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
          +  ++I LKV+GQD S + FK+K  T L KL  +YC  Q                     
Sbjct: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51

Query: 77 PKELGMEEEDVIEVYQEQTG 96
             L ME+E  I+V+Q+QTG
Sbjct: 52 ---LEMEDEGTIDVFQQQTG 68


>gi|239509111 PREDICTED: similar to Small ubiquitin-related
          modifier 2 [Homo sapiens]
          Length = 103

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)

Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
          +  ++I LKV+GQD S + FK+K  T L KL  +YC  Q                     
Sbjct: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51

Query: 77 PKELGMEEEDVIEVYQEQTG 96
             L ME+E  I+V+Q+QTG
Sbjct: 52 ---LEMEDEGTIDVFQQQTG 68


>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
           homolog 2 [Homo sapiens]
          Length = 206

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 28/97 (28%)

Query: 1   MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
           ++D++ K   E     +  ++I LKV GQ+ S + F++K  T L KL ++Y         
Sbjct: 136 VADEKPKEGIET----ENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY--------- 182

Query: 61  SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
                          TP +L ME+ED  +++Q+Q+GG
Sbjct: 183 ---------------TPAQLEMEDEDTTDMFQQQSGG 204


>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
           sapiens]
          Length = 164

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 28/97 (28%)

Query: 1   MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
           ++D++ K   E     +  ++I LKV GQ+ S + F++K  T L KL ++Y         
Sbjct: 94  VADEKPKEGIET----ENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY--------- 140

Query: 61  SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
                          TP +L ME+ED  +++Q+Q+GG
Sbjct: 141 ---------------TPAQLEMEDEDTTDMFQQQSGG 162


>gi|46447823 nuclear factor of activated T-cells, cytoplasmic,
           calcineurin-dependent 2 interacting protein [Homo
           sapiens]
          Length = 419

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 20  EYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPK 78
           + ++L+V G++  + +   +   + LK L   Y +  G+    L F F+G +++    P 
Sbjct: 346 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPA 405

Query: 79  ELGMEEEDVIEVY 91
           +LGME  D+IEV+
Sbjct: 406 DLGMESGDLIEVW 418


>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 1  MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53
          M+D++ K   +     +  ++I LKV GQD S   FK+K  T L KL ++YC+
Sbjct: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93


>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 1  MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53
          M+D++ K   +     +  ++I LKV GQD S   FK+K  T L KL ++YC+
Sbjct: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93


>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
          Length = 93

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 1  MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53
          M+D++ K   +     +  ++I LKV GQD S   FK+K  T L KL ++YC+
Sbjct: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93


>gi|169790971 parkin isoform 2 [Homo sapiens]
          Length = 437

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 16/56 (28%), Positives = 34/56 (60%)

Query: 37 KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92
          +V   T + +LKE   +RQGVP + LR +F G+ + ++ T +   ++++ ++ + Q
Sbjct: 16 EVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQ 71


>gi|169790969 parkin isoform 1 [Homo sapiens]
          Length = 465

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 16/56 (28%), Positives = 34/56 (60%)

Query: 37 KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92
          +V   T + +LKE   +RQGVP + LR +F G+ + ++ T +   ++++ ++ + Q
Sbjct: 16 EVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQ 71


>gi|223972685 IQ motif and ubiquitin domain containing [Homo
           sapiens]
          Length = 791

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 7   KPSTEDLGDKKEGEYIKLKVI----GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSL 62
           K   E L +  E     +KV+    GQ   EI    K+ T LK LK+ +    G+P + L
Sbjct: 116 KSVKESLQESVEDSLATVKVVLIPVGQ---EIVIPFKVDTILKYLKDHFSHLLGIPHSVL 172

Query: 63  RFLFEGQRIADNHTPKELGMEEEDVIEV 90
           +  + G+ + +N T  + G++ +++++V
Sbjct: 173 QIRYSGKILKNNETLVQHGVKPQEIVQV 200


>gi|169790973 parkin isoform 3 [Homo sapiens]
          Length = 316

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 37 KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKE 79
          +V   T + +LKE   +RQGVP + LR +F G+ + ++ T +E
Sbjct: 16 EVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQE 58


>gi|5453760 neural precursor cell expressed, developmentally
          down-regulated 8 [Homo sapiens]
          Length = 81

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 16/74 (21%), Positives = 36/74 (48%)

Query: 24 LKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGME 83
          +KV      EI   ++ T  ++++KE   +++G+P    R ++ G+++ D  T  +  + 
Sbjct: 3  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62

Query: 84 EEDVIEVYQEQTGG 97
             V+ +     GG
Sbjct: 63 GGSVLHLVLALRGG 76


>gi|67191208 ubiquitin C [Homo sapiens]
          Length = 685

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 165 ITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224

Query: 94  QTGG 97
             GG
Sbjct: 225 LRGG 228



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
          I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 94 QTGG 97
            GG
Sbjct: 73 LRGG 76



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 89  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

Query: 94  QTGG 97
             GG
Sbjct: 149 LRGG 152



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300

Query: 94  QTGG 97
             GG
Sbjct: 301 LRGG 304



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 317 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376

Query: 94  QTGG 97
             GG
Sbjct: 377 LRGG 380



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 393 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 452

Query: 94  QTGG 97
             GG
Sbjct: 453 LRGG 456



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528

Query: 94  QTGG 97
             GG
Sbjct: 529 LRGG 532



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 545 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604

Query: 94  QTGG 97
             GG
Sbjct: 605 LRGG 608



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 621 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680

Query: 94  QTGG 97
             GG
Sbjct: 681 LRGG 684


>gi|11024714 ubiquitin B precursor [Homo sapiens]
          Length = 229

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
          I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 94 QTGG 97
            GG
Sbjct: 73 LRGG 76



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 89  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

Query: 94  QTGG 97
             GG
Sbjct: 149 LRGG 152



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 165 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224

Query: 94  QTGG 97
             GG
Sbjct: 225 LRGG 228


>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
          sapiens]
          Length = 156

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
          I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 94 QTGG 97
            GG
Sbjct: 73 LRGG 76


>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
          sapiens]
          Length = 156

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
          I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 94 QTGG 97
            GG
Sbjct: 73 LRGG 76


>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
          sapiens]
          Length = 128

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
          I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 94 QTGG 97
            GG
Sbjct: 73 LRGG 76


>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
          sapiens]
          Length = 128

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
          I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +   
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

Query: 94 QTGG 97
            GG
Sbjct: 73 LRGG 76


>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
          Length = 334

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 11/57 (19%), Positives = 31/57 (54%)

Query: 34  IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEV 90
           I  +V+ +  ++ +K     ++G+P +  R +F G+++ D  T  +  +++E  + +
Sbjct: 81  ITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQKEPTLHL 137


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,987,998
Number of Sequences: 37866
Number of extensions: 156452
Number of successful extensions: 405
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 65
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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