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Search of human proteins with 54792065
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre... 206 2e-54
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec... 206 2e-54
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre... 152 7e-38
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens] 96 5e-21
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre... 93 5e-20
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens] 79 6e-16
gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre... 58 1e-09
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h... 52 1e-07
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif... 50 4e-07
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ... 50 4e-07
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ... 50 4e-07
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif... 50 4e-07
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ... 47 4e-06
gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ... 47 4e-06
gi|46447823 nuclear factor of activated T-cells, cytoplasmic, ca... 42 8e-05
gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens] 40 3e-04
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens] 40 3e-04
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens] 40 3e-04
gi|169790971 parkin isoform 2 [Homo sapiens] 40 5e-04
gi|169790969 parkin isoform 1 [Homo sapiens] 40 5e-04
gi|223972685 IQ motif and ubiquitin domain containing [Homo sapi... 37 0.004
gi|169790973 parkin isoform 3 [Homo sapiens] 34 0.022
gi|5453760 neural precursor cell expressed, developmentally down... 33 0.048
gi|67191208 ubiquitin C [Homo sapiens] 33 0.048
gi|11024714 ubiquitin B precursor [Homo sapiens] 33 0.063
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 33 0.063
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 33 0.063
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 33 0.063
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 33 0.063
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 30 0.41
>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 206 bits (525), Expect = 2e-54
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
Sbjct: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
Query: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 101
SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
Sbjct: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 101
>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 206 bits (525), Expect = 2e-54
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
Sbjct: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
Query: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 101
SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
Sbjct: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV 101
>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
precursor [Homo sapiens]
Length = 76
Score = 152 bits (383), Expect = 7e-38
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 88
QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI
Sbjct: 4 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 63
Query: 89 EVYQEQTGGHSTV 101
EVYQEQTGGHSTV
Sbjct: 64 EVYQEQTGGHSTV 76
>gi|48928058 small ubiquitin-like modifier protein 3 [Homo
sapiens]
Length = 103
Score = 96.3 bits (238), Expect = 5e-21
Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)
Query: 5 EAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF 64
E KP G K E ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M +RF
Sbjct: 3 EEKPKE---GVKTENDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59
Query: 65 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92
>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
precursor [Homo sapiens]
Length = 95
Score = 92.8 bits (229), Expect = 5e-20
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 4/97 (4%)
Query: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
M+D++ K + + ++I LKV GQD S + FK+K T L KL ++YC+RQG+ M
Sbjct: 1 MADEKPKEGVKT----ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR 56
Query: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
+RF F+GQ I + TP +L ME+ED I+V+Q+QTGG
Sbjct: 57 QIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93
>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
Length = 95
Score = 79.3 bits (194), Expect = 6e-16
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
+ +I LKV GQD S + FK+K T L KL ++YC+ +G+ + +RF F GQ I+
Sbjct: 13 ENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRFRFGGQPISGTDK 72
Query: 77 PKELGMEEEDVIEVYQEQTGG 97
P +L ME+ED I+V+Q+ TGG
Sbjct: 73 PAQLEMEDEDTIDVFQQPTGG 93
>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
precursor [Homo sapiens]
Length = 71
Score = 58.2 bits (139), Expect = 1e-09
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 28/97 (28%)
Query: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
M+D++ K + + ++I LKV GQD S + FK+K T L KL ++YC+RQ
Sbjct: 1 MADEKPKEGVKT----ENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQ----- 51
Query: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
L ME+ED I+V+Q+QTGG
Sbjct: 52 -------------------LEMEDEDTIDVFQQQTGG 69
>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
homolog 2 [Homo sapiens]
Length = 70
Score = 52.0 bits (123), Expect = 1e-07
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 24/84 (28%)
Query: 14 GDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD 73
G K + +I LKV+GQ S + FK+K T L KL ++YC+ Q
Sbjct: 9 GVKTKNNHINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCELQ------------------ 50
Query: 74 NHTPKELGMEEEDVIEVYQEQTGG 97
L ME ED I+V+Q+Q GG
Sbjct: 51 ------LEMENEDTIDVFQQQMGG 68
>gi|239754793 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 50.1 bits (118), Expect = 4e-07
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)
Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
+ ++I LKV+GQD S + FK+K T L KL +YC Q
Sbjct: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51
Query: 77 PKELGMEEEDVIEVYQEQTG 96
L ME+E I+V+Q+QTG
Sbjct: 52 ---LEMEDEGTIDVFQQQTG 68
>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
sapiens]
Length = 103
Score = 50.1 bits (118), Expect = 4e-07
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)
Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
+ ++I LKV+GQD S + FK+K T L KL +YC Q
Sbjct: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51
Query: 77 PKELGMEEEDVIEVYQEQTG 96
L ME+E I+V+Q+QTG
Sbjct: 52 ---LEMEDEGTIDVFQQQTG 68
>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
sapiens]
Length = 103
Score = 50.1 bits (118), Expect = 4e-07
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)
Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
+ ++I LKV+GQD S + FK+K T L KL +YC Q
Sbjct: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51
Query: 77 PKELGMEEEDVIEVYQEQTG 96
L ME+E I+V+Q+QTG
Sbjct: 52 ---LEMEDEGTIDVFQQQTG 68
>gi|239509111 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 50.1 bits (118), Expect = 4e-07
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 24/80 (30%)
Query: 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHT 76
+ ++I LKV+GQD S + FK+K T L KL +YC Q
Sbjct: 13 ENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCDAQ--------------------- 51
Query: 77 PKELGMEEEDVIEVYQEQTG 96
L ME+E I+V+Q+QTG
Sbjct: 52 ---LEMEDEGTIDVFQQQTG 68
>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
homolog 2 [Homo sapiens]
Length = 206
Score = 46.6 bits (109), Expect = 4e-06
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 28/97 (28%)
Query: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
++D++ K E + ++I LKV GQ+ S + F++K T L KL ++Y
Sbjct: 136 VADEKPKEGIET----ENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY--------- 182
Query: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
TP +L ME+ED +++Q+Q+GG
Sbjct: 183 ---------------TPAQLEMEDEDTTDMFQQQSGG 204
>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
sapiens]
Length = 164
Score = 46.6 bits (109), Expect = 4e-06
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 28/97 (28%)
Query: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60
++D++ K E + ++I LKV GQ+ S + F++K T L KL ++Y
Sbjct: 94 VADEKPKEGIET----ENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY--------- 140
Query: 61 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97
TP +L ME+ED +++Q+Q+GG
Sbjct: 141 ---------------TPAQLEMEDEDTTDMFQQQSGG 162
>gi|46447823 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 2 interacting protein [Homo
sapiens]
Length = 419
Score = 42.4 bits (98), Expect = 8e-05
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 20 EYIKLKVIGQDSSE-IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPK 78
+ ++L+V G++ + + + + LK L Y + G+ L F F+G +++ P
Sbjct: 346 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPA 405
Query: 79 ELGMEEEDVIEVY 91
+LGME D+IEV+
Sbjct: 406 DLGMESGDLIEVW 418
>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53
M+D++ K + + ++I LKV GQD S FK+K T L KL ++YC+
Sbjct: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53
M+D++ K + + ++I LKV GQD S FK+K T L KL ++YC+
Sbjct: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53
M+D++ K + + ++I LKV GQD S FK+K T L KL ++YC+
Sbjct: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 39.7 bits (91), Expect = 5e-04
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 37 KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92
+V T + +LKE +RQGVP + LR +F G+ + ++ T + ++++ ++ + Q
Sbjct: 16 EVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQ 71
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 39.7 bits (91), Expect = 5e-04
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 37 KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92
+V T + +LKE +RQGVP + LR +F G+ + ++ T + ++++ ++ + Q
Sbjct: 16 EVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCDLDQQSIVHIVQ 71
>gi|223972685 IQ motif and ubiquitin domain containing [Homo
sapiens]
Length = 791
Score = 36.6 bits (83), Expect = 0.004
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 7 KPSTEDLGDKKEGEYIKLKVI----GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSL 62
K E L + E +KV+ GQ EI K+ T LK LK+ + G+P + L
Sbjct: 116 KSVKESLQESVEDSLATVKVVLIPVGQ---EIVIPFKVDTILKYLKDHFSHLLGIPHSVL 172
Query: 63 RFLFEGQRIADNHTPKELGMEEEDVIEV 90
+ + G+ + +N T + G++ +++++V
Sbjct: 173 QIRYSGKILKNNETLVQHGVKPQEIVQV 200
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 34.3 bits (77), Expect = 0.022
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 37 KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKE 79
+V T + +LKE +RQGVP + LR +F G+ + ++ T +E
Sbjct: 16 EVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQE 58
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 33.1 bits (74), Expect = 0.048
Identities = 16/74 (21%), Positives = 36/74 (48%)
Query: 24 LKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGME 83
+KV EI ++ T ++++KE +++G+P R ++ G+++ D T + +
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 84 EEDVIEVYQEQTGG 97
V+ + GG
Sbjct: 63 GGSVLHLVLALRGG 76
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 33.1 bits (74), Expect = 0.048
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 165 ITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224
Query: 94 QTGG 97
GG
Sbjct: 225 LRGG 228
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 94 QTGG 97
GG
Sbjct: 73 LRGG 76
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 89 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Query: 94 QTGG 97
GG
Sbjct: 149 LRGG 152
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
Query: 94 QTGG 97
GG
Sbjct: 301 LRGG 304
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 317 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376
Query: 94 QTGG 97
GG
Sbjct: 377 LRGG 380
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 393 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 452
Query: 94 QTGG 97
GG
Sbjct: 453 LRGG 456
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528
Query: 94 QTGG 97
GG
Sbjct: 529 LRGG 532
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 545 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 604
Query: 94 QTGG 97
GG
Sbjct: 605 LRGG 608
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 621 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 680
Query: 94 QTGG 97
GG
Sbjct: 681 LRGG 684
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 94 QTGG 97
GG
Sbjct: 73 LRGG 76
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 89 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Query: 94 QTGG 97
GG
Sbjct: 149 LRGG 152
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 165 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224
Query: 94 QTGG 97
GG
Sbjct: 225 LRGG 228
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 94 QTGG 97
GG
Sbjct: 73 LRGG 76
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 94 QTGG 97
GG
Sbjct: 73 LRGG 76
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 94 QTGG 97
GG
Sbjct: 73 LRGG 76
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/64 (20%), Positives = 33/64 (51%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 94 QTGG 97
GG
Sbjct: 73 LRGG 76
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 30.0 bits (66), Expect = 0.41
Identities = 11/57 (19%), Positives = 31/57 (54%)
Query: 34 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEV 90
I +V+ + ++ +K ++G+P + R +F G+++ D T + +++E + +
Sbjct: 81 ITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQKEPTLHL 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,987,998
Number of Sequences: 37866
Number of extensions: 156452
Number of successful extensions: 405
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 65
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.