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Search of human proteins with 50959132
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50959132 PKD2 interactor, golgi and endoplasmic reticulum
associated 1 isoform b [Homo sapiens]
(126 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50959132 PKD2 interactor, golgi and endoplasmic reticulum ass... 249 5e-67
gi|7656942 PKD2 interactor, golgi and endoplasmic reticulum asso... 249 5e-67
gi|169168460 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapi... 89 9e-19
gi|88990086 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapiens] 89 9e-19
gi|88986509 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapiens] 89 9e-19
gi|37537696 M-phase phosphoprotein 9 [Homo sapiens] 37 0.005
gi|22749425 spermatid associated [Homo sapiens] 36 0.007
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 36 0.007
gi|122937345 myosin VB [Homo sapiens] 34 0.034
gi|4506787 IQ motif containing GTPase activating protein 1 [Homo... 33 0.044
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 33 0.058
gi|24308279 N-terminal EF-hand calcium binding protein 1 [Homo s... 33 0.075
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 33 0.075
gi|223671872 inhibitor of kappa light polypeptide gene enhancer ... 32 0.098
gi|42794779 myosin 18A isoform b [Homo sapiens] 32 0.13
gi|28416946 myosin 18A isoform a [Homo sapiens] 32 0.13
gi|54633317 thioredoxin domain containing 11 [Homo sapiens] 32 0.13
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 32 0.17
gi|223671870 inhibitor of kappa light polypeptide gene enhancer ... 30 0.37
gi|4504631 inhibitor of kappa light polypeptide gene enhancer in... 30 0.37
gi|153792133 inhibitor of kappa light polypeptide gene enhancer ... 30 0.37
gi|28195388 RAB11 family interacting protein 4 (class II) [Homo ... 30 0.37
gi|238908495 similar to pleckstrin homology domain protein (5V32... 30 0.64
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 30 0.64
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 30 0.64
gi|68299759 ecotropic viral integration site 5 [Homo sapiens] 29 0.83
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 29 0.83
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 29 0.83
gi|55749708 outer dense fiber of sperm tails 2-like isoform b [H... 29 0.83
gi|151101337 coiled-coil domain containing 43 isoform 1 [Homo sa... 29 0.83
>gi|50959132 PKD2 interactor, golgi and endoplasmic reticulum
associated 1 isoform b [Homo sapiens]
Length = 126
Score = 249 bits (635), Expect = 5e-67
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI 60
MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI
Sbjct: 1 MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI 60
Query: 61 AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR 120
AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR
Sbjct: 61 AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR 120
Query: 121 ISRKRK 126
ISRKRK
Sbjct: 121 ISRKRK 126
>gi|7656942 PKD2 interactor, golgi and endoplasmic reticulum
associated 1 isoform a [Homo sapiens]
Length = 126
Score = 249 bits (635), Expect = 5e-67
Identities = 126/126 (100%), Positives = 126/126 (100%)
Query: 1 MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI 60
MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI
Sbjct: 1 MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI 60
Query: 61 AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR 120
AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR
Sbjct: 61 AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR 120
Query: 121 ISRKRK 126
ISRKRK
Sbjct: 121 ISRKRK 126
>gi|169168460 PREDICTED: chibby homolog 3 (Drosophila) [Homo
sapiens]
Length = 242
Score = 89.0 bits (219), Expect = 9e-19
Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 8 FSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWIAETGV-- 65
FSP++ P R+ SLS + LD +TR+ ELGL YG+P M L+ Q+ F G+W E+ +
Sbjct: 88 FSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAYGAPCMRLSNQAFVFRGGRWTTESQLAR 147
Query: 66 --SGGVDRR----EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKE 115
S + R + Q R ++Q L EENN L+L+ ++L+DML+E+ A HL+EK+
Sbjct: 148 TRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLKLQQELLIDMLTETMARMHLLEKQ 203
>gi|88990086 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapiens]
Length = 242
Score = 89.0 bits (219), Expect = 9e-19
Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 8 FSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWIAETGV-- 65
FSP++ P R+ SLS + LD +TR+ ELGL YG+P M L+ Q+ F G+W E+ +
Sbjct: 88 FSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAYGAPCMRLSNQAFVFRGGRWTTESQLAR 147
Query: 66 --SGGVDRR----EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKE 115
S + R + Q R ++Q L EENN L+L+ ++L+DML+E+ A HL+EK+
Sbjct: 148 TRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLKLQQELLIDMLTETMARMHLLEKQ 203
>gi|88986509 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapiens]
Length = 242
Score = 89.0 bits (219), Expect = 9e-19
Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 8 FSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWIAETGV-- 65
FSP++ P R+ SLS + LD +TR+ ELGL YG+P M L+ Q+ F G+W E+ +
Sbjct: 88 FSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAYGAPCMRLSNQAFVFRGGRWTTESQLAR 147
Query: 66 --SGGVDRR----EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKE 115
S + R + Q R ++Q L EENN L+L+ ++L+DML+E+ A HL+EK+
Sbjct: 148 TRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLKLQQELLIDMLTETMARMHLLEKQ 203
>gi|37537696 M-phase phosphoprotein 9 [Homo sapiens]
Length = 1031
Score = 36.6 bits (83), Expect = 0.005
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 80 RNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRKRK 126
R + LE +NNLL ++V+ L + S +++ S ++++ ++E+R S K K
Sbjct: 508 RVRTLENKNNLLEIEVNDLRERFSAASSASKILQERIEEMRTSSKEK 554
>gi|22749425 spermatid associated [Homo sapiens]
Length = 448
Score = 36.2 bits (82), Expect = 0.007
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 31/155 (20%)
Query: 1 MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI 60
+P + + + P S L ++R + +L L+Y P + L+ + F++G+W+
Sbjct: 77 LPRLSRRMASQHSYPLNRFSSVPLDPMERPMSQADLELDYNPPRVQLSDEMFVFQDGRWV 136
Query: 61 AET--------GVSGGVDRR--------------EVQRLRRRNQQLEEENNLLRLKVDIL 98
E S + E + LR N+ L EEN +L + IL
Sbjct: 137 NENCRLQSPYFSPSASFHHKLHHKRLAKECMLQEENKSLREENKALREENRMLSKENKIL 196
Query: 99 LDM---------LSESTAESHLMEKELDELRISRK 124
ES A S L+ K+ L + +K
Sbjct: 197 QVFWEEHKASLGREESRAPSPLLHKDSASLEVVKK 231
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 36.2 bits (82), Expect = 0.007
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 68 GVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR 120
G D R QRL++R+QQLE E+ L K+ L M A ++E+ LR
Sbjct: 1413 GQDLRSSQRLQKRHQQLESESRTLAAKMAALASMAHGMAASPAILEETQKHLR 1465
Score = 26.2 bits (56), Expect = 7.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 68 GVDRREVQRLRRRNQQLEEENNLLRLKVDIL 98
G D VQRL R++++LE E + ++ +V+ L
Sbjct: 2358 GKDLESVQRLLRKHEELEREVHPIQAQVESL 2388
>gi|122937345 myosin VB [Homo sapiens]
Length = 1848
Score = 33.9 bits (76), Expect = 0.034
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 50 QSLKFENGQWIAETGVSGGVDRREVQRLRRRNQQLEEENNLLR-----LKVDILL---DM 101
+SL+ E + +E + RE LR+R LE+EN LL+ L IL D
Sbjct: 986 ESLRTELQRAHSERKILEDAHSREKDELRKRVADLEQENALLKDEKEQLNNQILCQSKDE 1045
Query: 102 LSESTAESHLMEKELDELR 120
++++ + +LM+KEL+E R
Sbjct: 1046 FAQNSVKENLMKKELEEER 1064
>gi|4506787 IQ motif containing GTPase activating protein 1 [Homo
sapiens]
Length = 1657
Score = 33.5 bits (75), Expect = 0.044
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 71 RREVQRLRRRNQQLEEENNLLRLKVDILL-------DMLSESTAESHLMEKELDELRISR 123
R EV L R NQQLE + NL+ +K+ +L+ D++S S + +++L ++ +
Sbjct: 893 REEVITLIRSNQQLENDLNLMDIKIGLLVKNKITLQDVVSHSKKLTKKNKEQLSDMMMIN 952
Query: 124 KRK 126
K+K
Sbjct: 953 KQK 955
>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo
sapiens]
Length = 1478
Score = 33.1 bits (74), Expect = 0.058
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 14 PPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQ---SLKFENGQWIAETGVSGGVD 70
PP +S+S+S+L S T+E+ + SP N A + ++ E Q ++
Sbjct: 194 PPSRSSSMSSLVSSYLQTQEMVSNFDLNSPLNNEALEGFDEMRLELDQ----------LE 243
Query: 71 RREVQRLRRRNQQLEEENNLLRLKV 95
RE Q LR R QQL+ EN LR V
Sbjct: 244 VREKQ-LRERMQQLDRENQELRAAV 267
Score = 26.9 bits (58), Expect = 4.1
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 71 RREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRKRK 126
R ++RL + L+EE + + D L L E A + E+EL ELR +K++
Sbjct: 442 RASLERLVKEMAPLQEELSGKGQEADQLWRRLQELLAHTSSWEEELAELRREKKQQ 497
>gi|24308279 N-terminal EF-hand calcium binding protein 1 [Homo
sapiens]
Length = 351
Score = 32.7 bits (73), Expect = 0.075
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 26/121 (21%)
Query: 15 PRKSASLSNLHSLDRSTREVELGLEYG--SPTMNLAGQSLKFENGQWIAETGVSGGVDRR 72
P K LS RS+R V+ + SP N++G L E+ QW+
Sbjct: 168 PAKPEVLSIQWPGKRSSRRVQRHNSFSPNSPQFNVSGPGLLEEDNQWMT----------- 216
Query: 73 EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLM---------EKELDELRISR 123
++ RL++ +LE+++ LK++ + + E +SH+M E++L+E +++
Sbjct: 217 QINRLQKLIDRLEKKD----LKLEPPEEEIIEGNTKSHIMLVQRQMSVIEEDLEEFQLAL 272
Query: 124 K 124
K
Sbjct: 273 K 273
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 32.7 bits (73), Expect = 0.075
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 19 ASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWIAETGVSGGVDRREVQRLR 78
A+ S LDR R +E G E S T+ + L ++GQ + ++++Q+++
Sbjct: 784 AAKSGKEELDRGARRLEEGTEETSETLEKLREELAIKSGQ-VEHLQQETAALKKQMQKIK 842
Query: 79 RRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR 120
+ Q + R ++SE A ++ EL ELR
Sbjct: 843 EQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELR 884
>gi|223671872 inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase gamma isoform c [Homo sapiens]
Length = 320
Score = 32.3 bits (72), Expect = 0.098
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 72 REVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRK 124
REV+ L+R QQ+ E+ ++ +V LL L ES + KE L RK
Sbjct: 123 REVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRRK 175
>gi|42794779 myosin 18A isoform b [Homo sapiens]
Length = 2039
Score = 32.0 bits (71), Expect = 0.13
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 73 EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAE 108
E+Q+LR + ++ E+E N LRL D L +SE T+E
Sbjct: 1262 EIQQLRSKLEKAEKERNELRLNSDRLESRISELTSE 1297
>gi|28416946 myosin 18A isoform a [Homo sapiens]
Length = 2054
Score = 32.0 bits (71), Expect = 0.13
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 73 EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAE 108
E+Q+LR + ++ E+E N LRL D L +SE T+E
Sbjct: 1262 EIQQLRSKLEKAEKERNELRLNSDRLESRISELTSE 1297
>gi|54633317 thioredoxin domain containing 11 [Homo sapiens]
Length = 958
Score = 32.0 bits (71), Expect = 0.13
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 71 RREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDEL 119
RR+ RLR++ + LEE+++LL + L + + T E + ++L EL
Sbjct: 832 RRDEHRLRQQQRALEEQHSLLHAHSEQLQALYEQKTRELQELARKLQEL 880
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 31.6 bits (70), Expect = 0.17
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 71 RREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRKR 125
+REVQRLR N+ L E + L + + E E ++ +ELR R R
Sbjct: 588 QREVQRLRSANELLSREKSNLAHSLQVAQQQAEELRQEREKLQAAQEELRRQRDR 642
Score = 28.9 bits (63), Expect = 1.1
Identities = 14/49 (28%), Positives = 31/49 (63%)
Query: 71 RREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDEL 119
RRE++R R+ +QLE + ++L ++ + + LS +T + +++ E E+
Sbjct: 658 RRELERSHRQLEQLEGKRSVLAKELVEVREALSRATLQRDMLQAEKAEV 706
Score = 27.3 bits (59), Expect = 3.2
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 60 IAETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTA 107
+A++ V G + V+RL ++EE LR KV L + L++S+A
Sbjct: 1693 VADSEVKAGTLQLTVERLNGALAKVEESEGALRDKVRGLTEALAQSSA 1740
>gi|223671870 inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase gamma isoform b [Homo sapiens]
Length = 487
Score = 30.4 bits (67), Expect = 0.37
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 72 REVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDEL 119
REV+ L+R QQ+ E+ ++ +V LL L ES + KE L
Sbjct: 191 REVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQAL 238
>gi|4504631 inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase gamma isoform a [Homo sapiens]
Length = 419
Score = 30.4 bits (67), Expect = 0.37
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 72 REVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDEL 119
REV+ L+R QQ+ E+ ++ +V LL L ES + KE L
Sbjct: 123 REVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQAL 170
>gi|153792133 inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase gamma isoform a [Homo sapiens]
Length = 419
Score = 30.4 bits (67), Expect = 0.37
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 72 REVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDEL 119
REV+ L+R QQ+ E+ ++ +V LL L ES + KE L
Sbjct: 123 REVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQAL 170
>gi|28195388 RAB11 family interacting protein 4 (class II) [Homo
sapiens]
Length = 637
Score = 30.4 bits (67), Expect = 0.37
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 73 EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRK 124
EV+ L R QQLEEEN LR V L + E M L++ + K
Sbjct: 418 EVELLNARVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRLK 469
>gi|238908495 similar to pleckstrin homology domain protein (5V327)
[Homo sapiens]
Length = 506
Score = 29.6 bits (65), Expect = 0.64
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 47 LAGQSLKFENGQWIAETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSEST 106
LA +S +FE QW+ SG V + Q + LE + L + LD L E T
Sbjct: 116 LAAES-EFEQTQWLEMLQESGKVTWKNAQLGEAMIKSLEAQGLQLAKEKQEYLDKLMEET 174
Query: 107 AESHLMEKELDEL 119
E L ++ +EL
Sbjct: 175 EELCLQREQREEL 187
Score = 26.2 bits (56), Expect = 7.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 72 REVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKEL 116
+ ++ R++ LEEE + L + L E TAE E+EL
Sbjct: 307 KRMKENEERSRALEEEREFYSSQSQALQNSLQELTAEKQQAEREL 351
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 29.6 bits (65), Expect = 0.64
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 70 DRREV--QRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRKR 125
+R EV Q L NQ+L++ K+ L L + E+ ++K L+EL+IS KR
Sbjct: 752 ERLEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKR 809
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 72 REVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKE 115
+E +L + +QLE+EN LR + +I L E+ + +EKE
Sbjct: 822 QETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKE 865
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 73 EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRKR 125
+++ L + N QL+EEN LR V+ L S A+ L KEL+ + K+
Sbjct: 688 QLESLEKENSQLDEENLELRRNVE-SLKCASMKMAQLQLENKELESEKEQLKK 739
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 29.6 bits (65), Expect = 0.64
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 70 DRREV--QRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRKR 125
+R EV Q L NQ+L++ K+ L L + E+ ++K L+EL+IS KR
Sbjct: 752 ERLEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKR 809
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 72 REVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKE 115
+E +L + +QLE+EN LR + +I L E+ + +EKE
Sbjct: 822 QETSQLEKDKKQLEKENKRLRQQAEIKDTTLEENNVKIGNLEKE 865
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 73 EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELRISRKR 125
+++ L + N QL+EEN LR V+ L S A+ L KEL+ + K+
Sbjct: 688 QLESLEKENSQLDEENLELRRNVE-SLKCASMKMAQLQLENKELESEKEQLKK 739
>gi|68299759 ecotropic viral integration site 5 [Homo sapiens]
Length = 810
Score = 29.3 bits (64), Expect = 0.83
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 73 EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLME-----KELDE 118
+V + +RN L +ENN+ RL+ +++ L E+ A L E K+L+E
Sbjct: 487 KVLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEE 537
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 29.3 bits (64), Expect = 0.83
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 68 GVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR 120
G+ E + L+ RN++++E+N RL++ + + E E + E+EL+ L+
Sbjct: 220 GISHLEEKELKERNKRIQEDN---RLELQKVKQLRLEREREKAMREQELEMLQ 269
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 29.3 bits (64), Expect = 0.83
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 68 GVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR 120
G+ E + L+ RN++++E+N RL++ + + E E + E+EL+ L+
Sbjct: 220 GISHLEEKELKERNKRIQEDN---RLELQKVKQLRLEREREKAMREQELEMLQ 269
>gi|55749708 outer dense fiber of sperm tails 2-like isoform b [Homo
sapiens]
Length = 513
Score = 29.3 bits (64), Expect = 0.83
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 84 LEEENNLLRLKVDILLDMLSESTAESHLMEKEL 116
LEEEN L++LK + L L + AE+ +EK+L
Sbjct: 359 LEEENCLIQLKCENLQQKLEQMDAENKELEKKL 391
>gi|151101337 coiled-coil domain containing 43 isoform 1 [Homo
sapiens]
Length = 224
Score = 29.3 bits (64), Expect = 0.83
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 16 RKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWIAETGVSGGVDRREVQ 75
RK+A L+ + E + + G+ TMN+ L F N T V ++ R+++
Sbjct: 127 RKAALLAQYADVTDEEDEADEKDDSGATTMNIGSDKLLFRN------TNVEDVLNARKLE 180
Query: 76 R--LRRRNQQLEEENNLLR 92
R LR +Q+ +E++ L R
Sbjct: 181 RDSLRDESQRKKEQDKLQR 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,712,068
Number of Sequences: 37866
Number of extensions: 187373
Number of successful extensions: 1261
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 280
length of query: 126
length of database: 18,247,518
effective HSP length: 90
effective length of query: 36
effective length of database: 14,839,578
effective search space: 534224808
effective search space used: 534224808
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.