Search of human proteins with 50658084

Search of human proteins with 50658084

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|50658084 branched chain aminotransferase 2, mitochondrial
[Homo sapiens]
         (392 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|50658084 branched chain aminotransferase 2, mitochondrial [Ho...   810   0.0  
gi|38176287 branched chain aminotransferase 1, cytosolic [Homo s...   452   e-127

>gi|50658084 branched chain aminotransferase 2, mitochondrial [Homo
           sapiens]
          Length = 392

 Score =  810 bits (2092), Expect = 0.0
 Identities = 392/392 (100%), Positives = 392/392 (100%)

Query: 1   MAAAALGQIWARKLLSVPWLLCGPRRYASSSFKAADLQLEMTQKPHKKPGPGEPLVFGKT 60
           MAAAALGQIWARKLLSVPWLLCGPRRYASSSFKAADLQLEMTQKPHKKPGPGEPLVFGKT
Sbjct: 1   MAAAALGQIWARKLLSVPWLLCGPRRYASSSFKAADLQLEMTQKPHKKPGPGEPLVFGKT 60

Query: 61  FTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRP 120
           FTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRP
Sbjct: 61  FTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRP 120

Query: 121 WLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSL 180
           WLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSL
Sbjct: 121 WLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSL 180

Query: 181 GVSQPTRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLV 240
           GVSQPTRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLV
Sbjct: 181 GVSQPTRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLV 240

Query: 241 QQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS 300
           QQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS
Sbjct: 241 QQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS 300

Query: 301 LLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIP 360
           LLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIP
Sbjct: 301 LLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIP 360

Query: 361 TMENGPELILRFQKELKEIQYGIRAHEWMFPV 392
           TMENGPELILRFQKELKEIQYGIRAHEWMFPV
Sbjct: 361 TMENGPELILRFQKELKEIQYGIRAHEWMFPV 392


>gi|38176287 branched chain aminotransferase 1, cytosolic [Homo
           sapiens]
          Length = 386

 Score =  452 bits (1163), Expect = e-127
 Identities = 215/367 (58%), Positives = 273/367 (74%), Gaps = 2/367 (0%)

Query: 23  GPRRYASSSFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK-GWGQPRIQ 81
           G  +    +FKA DL +       +KP P   LVFG  FTDHML VEW+ + GW +P I+
Sbjct: 16  GGSKEVVGTFKAKDLIVTPATILKEKPDPNN-LVFGTVFTDHMLTVEWSSEFGWEKPHIK 74

Query: 82  PFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDK 141
           P QNL+LHP SS+LHY+++LFEG+KAF+G D ++RLF+P LNMDRM RSA+R  LP FDK
Sbjct: 75  PLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDK 134

Query: 142 LELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPTRALLFVILCPVGAYF 201
            ELLECI++L+++D++WVP +   SLY+RP  IG EPSLGV +PT+ALLFV+L PVG YF
Sbjct: 135 EELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYF 194

Query: 202 PGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ 261
             G+  PVSL A+P ++RAW GG G+ K+GGNYG ++  Q EA+  GC+QVLWLYG DHQ
Sbjct: 195 SSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ 254

Query: 262 LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMK 321
           +TEVGTMN+F+YW +EDG  EL TPPL+G+ILPGV R+ +LD+A  WGEF+V ER +TM 
Sbjct: 255 ITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMD 314

Query: 322 QLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQY 381
            L  ALE  RVRE+FGSGTAC VCPV  ILYK   +HIPTMENGP+L  R   +L +IQY
Sbjct: 315 DLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQY 374

Query: 382 GIRAHEW 388
           G    +W
Sbjct: 375 GREESDW 381


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,324,268
Number of Sequences: 37866
Number of extensions: 764069
Number of successful extensions: 1411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1408
Number of HSP's gapped (non-prelim): 2
length of query: 392
length of database: 18,247,518
effective HSP length: 104
effective length of query: 288
effective length of database: 14,309,454
effective search space: 4121122752
effective search space used: 4121122752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.