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Search of human proteins with 5016090
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5016090 nuclear receptor subfamily 0, group B, member 1
[Homo sapiens]
(470 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5016090 nuclear receptor subfamily 0, group B, member 1 [Homo... 984 0.0
gi|13259503 short heterodimer partner [Homo sapiens] 147 2e-35
gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Hom... 92 1e-18
gi|36950991 nuclear receptor subfamily 2, group C, member 2 [Hom... 84 2e-16
gi|7657395 photoreceptor-specific nuclear receptor isoform b [Ho... 82 1e-15
gi|223555953 nuclear receptor subfamily 2, group F, member 2 iso... 79 1e-14
gi|223555951 nuclear receptor subfamily 2, group F, member 2 iso... 79 1e-14
gi|223555949 nuclear receptor subfamily 2, group F, member 2 iso... 79 1e-14
gi|14149746 nuclear receptor subfamily 2, group F, member 2 isof... 79 1e-14
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo... 77 4e-14
gi|31077209 hepatocyte nuclear factor 4 alpha isoform c [Homo sa... 69 1e-11
gi|31077207 hepatocyte nuclear factor 4 alpha isoform a [Homo sa... 69 1e-11
gi|31077205 hepatocyte nuclear factor 4 alpha isoform b [Homo sa... 69 1e-11
gi|71725336 hepatocyte nuclear factor 4 alpha isoform f [Homo sa... 69 1e-11
gi|71725341 hepatocyte nuclear factor 4 alpha isoform e [Homo sa... 69 1e-11
gi|71725339 hepatocyte nuclear factor 4 alpha isoform d [Homo sa... 69 1e-11
gi|189491739 nuclear receptor subfamily 2, group C, member 1 iso... 67 5e-11
gi|11415052 retinoid X receptor, beta [Homo sapiens] 66 8e-11
gi|4506755 retinoid X receptor, alpha [Homo sapiens] 65 1e-10
gi|115583654 hepatocyte nuclear factor 4, gamma [Homo sapiens] 65 1e-10
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens] 64 3e-10
gi|45545405 nuclear receptor subfamily 5, group A, member 2 isof... 60 3e-09
gi|4504343 nuclear receptor subfamily 5, group A, member 2 isofo... 60 3e-09
gi|7706515 photoreceptor-specific nuclear receptor isoform a [Ho... 59 1e-08
gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo... 58 2e-08
gi|45545429 estrogen-related receptor gamma isoform 2 [Homo sapi... 54 3e-07
gi|45545427 estrogen-related receptor gamma isoform 2 [Homo sapi... 54 3e-07
gi|45545433 estrogen-related receptor gamma isoform 1 [Homo sapi... 54 3e-07
gi|197209821 estrogen-related receptor gamma isoform 2 [Homo sap... 54 3e-07
gi|238550159 estrogen-related receptor beta [Homo sapiens] 48 2e-05
>gi|5016090 nuclear receptor subfamily 0, group B, member 1 [Homo
sapiens]
Length = 470
Score = 984 bits (2545), Expect = 0.0
Identities = 470/470 (100%), Positives = 470/470 (100%)
Query: 1 MAGENHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNV 60
MAGENHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNV
Sbjct: 1 MAGENHQWQGSILYNMLMSAKQTRAAPEAPETRLVDQCWGCSCGDEPGVGREGLLGGRNV 60
Query: 61 ALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL 120
ALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL
Sbjct: 61 ALLYRCCFCGKDHPRQGSILYSMLTSAKQTYAAPKAPEATLGPCWGCSCGSDPGVGRAGL 120
Query: 121 PGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQR 180
PGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQR
Sbjct: 121 PGGRPVALLYRCCFCGEDHPRQGSILYSLLTSSKQTHVAPAAPEARPGGAWWDRSYFAQR 180
Query: 181 PGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSS 240
PGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSS
Sbjct: 181 PGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEERPRAPWWDTSS 240
Query: 241 GALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELA 300
GALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELA
Sbjct: 241 GALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELA 300
Query: 301 QDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQA 360
QDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQA
Sbjct: 301 QDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQA 360
Query: 361 IKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQ 420
IKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQ
Sbjct: 361 IKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQ 420
Query: 421 GPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI 470
GPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI
Sbjct: 421 GPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI 470
>gi|13259503 short heterodimer partner [Homo sapiens]
Length = 257
Score = 147 bits (371), Expect = 2e-35
Identities = 88/223 (39%), Positives = 117/223 (52%), Gaps = 13/223 (5%)
Query: 244 RPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDR 303
RPV L +P C A L KT+ F++ LP F LP Q L++ CW L +L LAQD
Sbjct: 45 RPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDA 104
Query: 304 LQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKC 363
+ FE E PS+L+KIL +GG+ LP R PS + VQ ++C
Sbjct: 105 VTFEVAEAPVPSILKKILLEEPSSSGGSGQLP-------------DRPQPSLAAVQWLQC 151
Query: 364 FLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPH 423
L WSL +S KEYA LKGT+LFNPDVPGLQ +I LQ +L E
Sbjct: 152 CLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQ 211
Query: 424 DRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
R + T L+ I +++ +LFFRPIIG V + ++ +ML
Sbjct: 212 GRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDML 254
>gi|20070199 nuclear receptor subfamily 2, group F, member 6 [Homo
sapiens]
Length = 404
Score = 91.7 bits (226), Expect = 1e-18
Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 24/213 (11%)
Query: 254 VCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVSE 313
VCE A+ L T+ + ++ P F LP+ Q+ L+R W+ L +L AQ L T +
Sbjct: 202 VCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLA 261
Query: 314 PSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLNI 373
+ L H AP A R V QV+A + + K L +
Sbjct: 262 AAGL------------------------HAAPMAAERAVAFMDQVRAFQEQVDKLGRLQV 297
Query: 374 STKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNSTL 433
+ EY LK LF PD GL +++ LQ Q L+E+ R + RF L L
Sbjct: 298 DSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRL 357
Query: 434 FLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
LR + A++I++LFF ++G ++ ++ +ML
Sbjct: 358 PALRAVPASLISQLFFMRLVGKTPIETLIRDML 390
>gi|36950991 nuclear receptor subfamily 2, group C, member 2 [Homo
sapiens]
Length = 615
Score = 84.3 bits (207), Expect = 2e-16
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 18/209 (8%)
Query: 254 VCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVSE 313
+CE+AS L ++ + + +P FQ L D LVR CW L L LAQ +V
Sbjct: 405 ICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQ------CAQVMS 458
Query: 314 PSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLNI 373
S + + + + + L ++ + + ++ F + L+I
Sbjct: 459 LSTILAAIVNHLQNSIQEDKLSGDRIKQVM------------EHIWKLQEFCNSMAKLDI 506
Query: 374 STKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNSTL 433
EYAYLK VLF+PD PGL I+ Q Q L ++ + T+ R + L
Sbjct: 507 DGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRL 566
Query: 434 FLLRFINANVIAELFFRPIIGTVSMDDMM 462
LR +++N+ ELFF +IG VS+D ++
Sbjct: 567 PALRLMSSNITEELFFTGLIGNVSIDSII 595
>gi|7657395 photoreceptor-specific nuclear receptor isoform b [Homo
sapiens]
Length = 410
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 32/237 (13%)
Query: 229 ERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVR 288
E P +P+ +S P L S + E ++ L +++ K LP F LP Q++L+
Sbjct: 203 EFPSSPYSSSS-----PCGLDS---IHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLE 254
Query: 289 NCWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAE 348
W+ L +L Q L ++ + P + A A+
Sbjct: 255 EAWSELFLLGAIQWSLPLDSCPLLAPP------------------------EASAAGGAQ 290
Query: 349 ARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQ 408
R ++ + + ++ +S+ +L + E+A +K VLF P+ GL+ ++++ LQ +Q
Sbjct: 291 GRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQ 350
Query: 409 QILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEM 465
+LS+H++ H RF +L L LRFI A I LFFR IG M+ ++ +M
Sbjct: 351 VMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDM 407
>gi|223555953 nuclear receptor subfamily 2, group F, member 2
isoform c [Homo sapiens]
Length = 261
Score = 78.6 bits (192), Expect = 1e-14
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
S ++P + + +CE A+ L + + + +P F L + Q+ L+R W+ L +L
Sbjct: 45 SQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNA 104
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
AQ + + + L H +P + R V ++
Sbjct: 105 AQCSMPLHVAPLLAAAGL------------------------HASPMSADRVVAFMDHIR 140
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + K +L++ + EY+ LK VLF D GL V +++ LQ +Q L E+ R +
Sbjct: 141 IFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQY 200
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF +L L LR ++++VI +LFF ++G ++ ++ +ML
Sbjct: 201 PNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 247
>gi|223555951 nuclear receptor subfamily 2, group F, member 2
isoform c [Homo sapiens]
Length = 261
Score = 78.6 bits (192), Expect = 1e-14
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
S ++P + + +CE A+ L + + + +P F L + Q+ L+R W+ L +L
Sbjct: 45 SQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNA 104
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
AQ + + + L H +P + R V ++
Sbjct: 105 AQCSMPLHVAPLLAAAGL------------------------HASPMSADRVVAFMDHIR 140
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + K +L++ + EY+ LK VLF D GL V +++ LQ +Q L E+ R +
Sbjct: 141 IFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQY 200
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF +L L LR ++++VI +LFF ++G ++ ++ +ML
Sbjct: 201 PNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 247
>gi|223555949 nuclear receptor subfamily 2, group F, member 2
isoform b [Homo sapiens]
Length = 281
Score = 78.6 bits (192), Expect = 1e-14
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
S ++P + + +CE A+ L + + + +P F L + Q+ L+R W+ L +L
Sbjct: 65 SQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNA 124
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
AQ + + + L H +P + R V ++
Sbjct: 125 AQCSMPLHVAPLLAAAGL------------------------HASPMSADRVVAFMDHIR 160
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + K +L++ + EY+ LK VLF D GL V +++ LQ +Q L E+ R +
Sbjct: 161 IFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQY 220
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF +L L LR ++++VI +LFF ++G ++ ++ +ML
Sbjct: 221 PNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 267
>gi|14149746 nuclear receptor subfamily 2, group F, member 2 isoform
a [Homo sapiens]
Length = 414
Score = 78.6 bits (192), Expect = 1e-14
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
S ++P + + +CE A+ L + + + +P F L + Q+ L+R W+ L +L
Sbjct: 198 SQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNA 257
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
AQ + + + L H +P + R V ++
Sbjct: 258 AQCSMPLHVAPLLAAAGL------------------------HASPMSADRVVAFMDHIR 293
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + K +L++ + EY+ LK VLF D GL V +++ LQ +Q L E+ R +
Sbjct: 294 IFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQY 353
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF +L L LR ++++VI +LFF ++G ++ ++ +ML
Sbjct: 354 PNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 400
>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
sapiens]
Length = 423
Score = 76.6 bits (187), Expect = 4e-14
Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 24/227 (10%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
S ++P + + +CE A+ L + + + +P F L + Q+ L+R W+ L +L
Sbjct: 205 SQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNA 264
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
AQ + + + L H +P + R V ++
Sbjct: 265 AQCSMPLHVAPLLAAAGL------------------------HASPMSADRVVAFMDHIR 300
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + K +L++ + EY+ LK VLF D GL +I+ LQ +Q L E+ R +
Sbjct: 301 IFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQY 360
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF +L L LR ++++VI +LFF ++G ++ ++ +ML
Sbjct: 361 PNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML 407
>gi|31077209 hepatocyte nuclear factor 4 alpha isoform c [Homo
sapiens]
Length = 417
Score = 68.6 bits (166), Expect = 1e-11
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 25/227 (11%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
+G +R + S VCE+ LL + + KY+P F LPLD Q+ L+R L+L
Sbjct: 173 NGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGA 232
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
+ + F+ V + GN+ + + H AE +V ++
Sbjct: 233 TKRSMVFKDVLLL-----------------GNDYI----VPRHCPELAEMSRV----SIR 267
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + L I EYAYLK + F+PD GL I+ L+ Q L ++
Sbjct: 268 ILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQ 327
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF EL L L+ I +I ++ F + G +D+++ EML
Sbjct: 328 YDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEML 374
>gi|31077207 hepatocyte nuclear factor 4 alpha isoform a [Homo
sapiens]
Length = 464
Score = 68.6 bits (166), Expect = 1e-11
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 25/227 (11%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
+G +R + S VCE+ LL + + KY+P F LPLD Q+ L+R L+L
Sbjct: 173 NGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGA 232
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
+ + F+ V + GN+ + + H AE +V ++
Sbjct: 233 TKRSMVFKDVLLL-----------------GNDYI----VPRHCPELAEMSRV----SIR 267
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + L I EYAYLK + F+PD GL I+ L+ Q L ++
Sbjct: 268 ILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQ 327
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF EL L L+ I +I ++ F + G +D+++ EML
Sbjct: 328 YDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEML 374
>gi|31077205 hepatocyte nuclear factor 4 alpha isoform b [Homo
sapiens]
Length = 474
Score = 68.6 bits (166), Expect = 1e-11
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 25/227 (11%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
+G +R + S VCE+ LL + + KY+P F LPLD Q+ L+R L+L
Sbjct: 173 NGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGA 232
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
+ + F+ V + GN+ + + H AE +V ++
Sbjct: 233 TKRSMVFKDVLLL-----------------GNDYI----VPRHCPELAEMSRV----SIR 267
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + L I EYAYLK + F+PD GL I+ L+ Q L ++
Sbjct: 268 ILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQ 327
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF EL L L+ I +I ++ F + G +D+++ EML
Sbjct: 328 YDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEML 374
>gi|71725336 hepatocyte nuclear factor 4 alpha isoform f [Homo
sapiens]
Length = 395
Score = 68.6 bits (166), Expect = 1e-11
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 25/227 (11%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
+G +R + S VCE+ LL + + KY+P F LPLD Q+ L+R L+L
Sbjct: 151 NGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGA 210
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
+ + F+ V + GN+ + + H AE +V ++
Sbjct: 211 TKRSMVFKDVLLL-----------------GNDYI----VPRHCPELAEMSRV----SIR 245
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + L I EYAYLK + F+PD GL I+ L+ Q L ++
Sbjct: 246 ILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQ 305
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF EL L L+ I +I ++ F + G +D+++ EML
Sbjct: 306 YDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEML 352
>gi|71725341 hepatocyte nuclear factor 4 alpha isoform e [Homo
sapiens]
Length = 442
Score = 68.6 bits (166), Expect = 1e-11
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 25/227 (11%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
+G +R + S VCE+ LL + + KY+P F LPLD Q+ L+R L+L
Sbjct: 151 NGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGA 210
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
+ + F+ V + GN+ + + H AE +V ++
Sbjct: 211 TKRSMVFKDVLLL-----------------GNDYI----VPRHCPELAEMSRV----SIR 245
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + L I EYAYLK + F+PD GL I+ L+ Q L ++
Sbjct: 246 ILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQ 305
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF EL L L+ I +I ++ F + G +D+++ EML
Sbjct: 306 YDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEML 352
>gi|71725339 hepatocyte nuclear factor 4 alpha isoform d [Homo
sapiens]
Length = 452
Score = 68.6 bits (166), Expect = 1e-11
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 25/227 (11%)
Query: 240 SGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLEL 299
+G +R + S VCE+ LL + + KY+P F LPLD Q+ L+R L+L
Sbjct: 151 NGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGA 210
Query: 300 AQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQ 359
+ + F+ V + GN+ + + H AE +V ++
Sbjct: 211 TKRSMVFKDVLLL-----------------GNDYI----VPRHCPELAEMSRV----SIR 245
Query: 360 AIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTH 419
+ + L I EYAYLK + F+PD GL I+ L+ Q L ++
Sbjct: 246 ILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQ 305
Query: 420 QGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
RF EL L L+ I +I ++ F + G +D+++ EML
Sbjct: 306 YDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEML 352
>gi|189491739 nuclear receptor subfamily 2, group C, member 1
isoform a [Homo sapiens]
Length = 603
Score = 66.6 bits (161), Expect = 5e-11
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 32/218 (14%)
Query: 256 EAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQ-------DRLQFET 308
E+AS L ++ + +P FQ L + + LV+ W L L LAQ +
Sbjct: 395 ESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATF 454
Query: 309 VEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKC 368
V S+ Q ++T RR+ L H+ E F +
Sbjct: 455 VNCLHNSLQQDKMSTERRKL----------LMEHIFKLQE---------------FCNSM 489
Query: 369 WSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIE 428
L I EYAYLK VLF+PD P L+ ++ I+ Q ++ T+ R
Sbjct: 490 VKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLSR 549
Query: 429 LNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
L L LR +NA + ELFF+ +IG + +D ++ +L
Sbjct: 550 LLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHIL 587
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 65.9 bits (159), Expect = 8e-11
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 25/213 (11%)
Query: 254 VCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVSE 313
+C+AA L + + K +P F LPLD Q++L+R W LL+ + +++V +
Sbjct: 339 ICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSH-----RSIDVRD 393
Query: 314 PSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLNI 373
+L L R H A +V + +SK + +
Sbjct: 394 GILLATGLHVHRNSA------------HSAGVGAIFDRVLTE--------LVSKMRDMRM 433
Query: 374 STKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNSTL 433
E L+ +LFNPD GL ++ L+ L + + + RF +L L
Sbjct: 434 DKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRL 493
Query: 434 FLLRFINANVIAELFFRPIIGTVSMDDMMLEML 466
LR I + LFF +IG +D ++EML
Sbjct: 494 PALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML 526
>gi|4506755 retinoid X receptor, alpha [Homo sapiens]
Length = 462
Score = 65.5 bits (158), Expect = 1e-10
Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 28/246 (11%)
Query: 222 QAQAAPEERPRAPWWDTSSGALRPVALKSPQV-VCEAASAGLLKTLRFVKYLPCFQVLPL 280
+A+ A E P+ + ++ L P + P +C+AA L + + K +P F LPL
Sbjct: 237 EAELAVE--PKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPL 294
Query: 281 DQQLVLVRNCWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQ 340
D Q++L+R W LL+ + ++ V + +L L R
Sbjct: 295 DDQVILLRAGWNELLIASFSH-----RSIAVKDGILLATGLHVHRNSA------------ 337
Query: 341 HHLAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYI 400
H A +V + +SK + + E L+ VLFNPD GL +
Sbjct: 338 HSAGVGAIFDRVLTE--------LVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEV 389
Query: 401 QGLQWGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDD 460
+ L+ L + + + RF +L L LR I + LFF +IG +D
Sbjct: 390 EALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDT 449
Query: 461 MMLEML 466
++EML
Sbjct: 450 FLMEML 455
>gi|115583654 hepatocyte nuclear factor 4, gamma [Homo sapiens]
Length = 445
Score = 65.1 bits (157), Expect = 1e-10
Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 26/251 (10%)
Query: 216 VPTSTNQAQAAPEERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCF 275
+P+ AQA R + SS + + S VCE+ LL + + KY+P F
Sbjct: 138 IPSINTLAQAEVRSRQISVSSPGSSTDINVKKIASIGDVCESMKQQLLVLVEWAKYIPAF 197
Query: 276 QVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLP 335
LPLD Q+ L+R L+L + + ++ + + G N +
Sbjct: 198 CELPLDDQVALLRAHAGEHLLLGATKRSMMYKDILL----------------LGNNYVI- 240
Query: 336 VPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQ 395
H + E +V + + ++ F + I EYA LK V F+PD GL
Sbjct: 241 -----HRNSCEVEISRVANRVLDELVRPFQE----IQIDDNEYACLKAIVFFDPDAKGLS 291
Query: 396 CVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGT 455
I+ +++ Q L ++ RF EL L L+ I +I ++ F + G
Sbjct: 292 DPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFGM 351
Query: 456 VSMDDMMLEML 466
V +D+++ EML
Sbjct: 352 VKIDNLLQEML 362
>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
Length = 463
Score = 63.9 bits (154), Expect = 3e-10
Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 25/217 (11%)
Query: 254 VCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVSE 313
+C AA L + + K +P F L L+ Q++L+R W LL+ + +V V +
Sbjct: 269 ICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSH-----RSVSVQD 323
Query: 314 PSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLNI 373
+L L R A + V S + + +SK + +
Sbjct: 324 GILLATGLHVHRSS-------------------AHSAGVGSIFD-RVLTELVSKMKDMQM 363
Query: 374 STKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNSTL 433
E L+ VLFNPD GL ++ L+ L +T+ + RF +L L
Sbjct: 364 DKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRL 423
Query: 434 FLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI 470
LR I + LFF +IG +D ++EML T +
Sbjct: 424 PALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPL 460
>gi|45545405 nuclear receptor subfamily 5, group A, member 2 isoform
1 [Homo sapiens]
Length = 541
Score = 60.5 bits (145), Expect = 3e-09
Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 21/217 (9%)
Query: 253 VVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVS 312
++C+ A L + + + F+ L +D Q+ L++NCW+ LL+L D + + V
Sbjct: 344 LMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLIL----DHIYRQVVHGK 399
Query: 313 EPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLN 372
E S+ TG + +A A A S Q + ++K SL
Sbjct: 400 EGSIFLV--------TGQQVDYSI------IASQAGATLNNLMSHAQEL---VAKLRSLQ 442
Query: 373 ISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNST 432
+E+ LK VLF+ DV L+ + ++G+Q L ++T + ++F +L
Sbjct: 443 FDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLR 502
Query: 433 LFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTK 469
L +R I+ L+++ + G V +++++EML K
Sbjct: 503 LPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 539
>gi|4504343 nuclear receptor subfamily 5, group A, member 2 isoform
2 [Homo sapiens]
Length = 495
Score = 60.5 bits (145), Expect = 3e-09
Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 21/217 (9%)
Query: 253 VVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVS 312
++C+ A L + + + F+ L +D Q+ L++NCW+ LL+L D + + V
Sbjct: 298 LMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLIL----DHIYRQVVHGK 353
Query: 313 EPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLN 372
E S+ TG + +A A A S Q + ++K SL
Sbjct: 354 EGSIFLV--------TGQQVDYSI------IASQAGATLNNLMSHAQEL---VAKLRSLQ 396
Query: 373 ISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFIELNST 432
+E+ LK VLF+ DV L+ + ++G+Q L ++T + ++F +L
Sbjct: 397 FDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLR 456
Query: 433 LFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTK 469
L +R I+ L+++ + G V +++++EML K
Sbjct: 457 LPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 493
>gi|7706515 photoreceptor-specific nuclear receptor isoform a [Homo
sapiens]
Length = 367
Score = 58.5 bits (140), Expect = 1e-08
Identities = 44/191 (23%), Positives = 86/191 (45%), Gaps = 32/191 (16%)
Query: 229 ERPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVR 288
E P +P+ +S P L S + E ++ L +++ K LP F LP Q++L+
Sbjct: 203 EFPSSPYSSSS-----PCGLDS---IHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLE 254
Query: 289 NCWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAE 348
W+ L +L Q L ++ + P + A A+
Sbjct: 255 EAWSELFLLGAIQWSLPLDSCPLLAPP------------------------EASAAGGAQ 290
Query: 349 ARKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQ 408
R ++ + + ++ +S+ +L + E+A +K VLF P+ GL+ ++++ LQ +Q
Sbjct: 291 GRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQ 350
Query: 409 QILSEHTRMTH 419
+LS+H++ H
Sbjct: 351 VMLSQHSKAHH 361
>gi|4507537 nuclear receptor subfamily 2, group E, member 1 [Homo
sapiens]
Length = 385
Score = 57.8 bits (138), Expect = 2e-08
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 31/219 (14%)
Query: 254 VCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFETVEVSE 313
VCE+A+ L ++++ K +P F L L QL+L+ + W L +L +AQ + +
Sbjct: 185 VCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVD------ 238
Query: 314 PSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSKCWSLNI 373
N L V + + K+ S++QA++ +++ L +
Sbjct: 239 ----------------ANTLLAVSGMNGDNTDSQKLNKI--ISEIQALQEVVARFRQLRL 280
Query: 374 STKEYAYLKGTVLFN--PDVPGLQCVKY-----IQGLQWGTQQILSEHTRMTHQGPHDRF 426
E+A LK V F P G + + I LQ Q L+ + + RF
Sbjct: 281 DATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRF 340
Query: 427 IELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEM 465
+L L LR I+ + I E+FF+ IG V + ++ +M
Sbjct: 341 GKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDM 379
>gi|45545429 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 53.9 bits (128), Expect = 3e-07
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 26/223 (11%)
Query: 248 LKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFE 307
+K+ +C+ A L+ + + K++P F L L Q+ L+++ W +L+L + L FE
Sbjct: 239 IKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFE 298
Query: 308 TVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSK 367
V I+ + + G L LQ + K
Sbjct: 299 DELVYADDY---IMDEDQSKLAGLLDLNNAILQ-----------------------LVKK 332
Query: 368 CWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFI 427
S+ + +E+ LK L N D ++ V+ +Q LQ + L ++ H R
Sbjct: 333 YKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAG 392
Query: 428 ELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI 470
++ TL LLR + + + + G V M + LEML K+
Sbjct: 393 KMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV 435
>gi|45545427 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 53.9 bits (128), Expect = 3e-07
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 26/223 (11%)
Query: 248 LKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFE 307
+K+ +C+ A L+ + + K++P F L L Q+ L+++ W +L+L + L FE
Sbjct: 239 IKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFE 298
Query: 308 TVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSK 367
V I+ + + G L LQ + K
Sbjct: 299 DELVYADDY---IMDEDQSKLAGLLDLNNAILQ-----------------------LVKK 332
Query: 368 CWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFI 427
S+ + +E+ LK L N D ++ V+ +Q LQ + L ++ H R
Sbjct: 333 YKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAG 392
Query: 428 ELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI 470
++ TL LLR + + + + G V M + LEML K+
Sbjct: 393 KMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV 435
>gi|45545433 estrogen-related receptor gamma isoform 1 [Homo
sapiens]
Length = 458
Score = 53.9 bits (128), Expect = 3e-07
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 26/223 (11%)
Query: 248 LKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFE 307
+K+ +C+ A L+ + + K++P F L L Q+ L+++ W +L+L + L FE
Sbjct: 262 IKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFE 321
Query: 308 TVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSK 367
V I+ + + G L LQ + K
Sbjct: 322 DELVYADDY---IMDEDQSKLAGLLDLNNAILQ-----------------------LVKK 355
Query: 368 CWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFI 427
S+ + +E+ LK L N D ++ V+ +Q LQ + L ++ H R
Sbjct: 356 YKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAG 415
Query: 428 ELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI 470
++ TL LLR + + + + G V M + LEML K+
Sbjct: 416 KMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV 458
>gi|197209821 estrogen-related receptor gamma isoform 2 [Homo
sapiens]
Length = 435
Score = 53.9 bits (128), Expect = 3e-07
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 26/223 (11%)
Query: 248 LKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFE 307
+K+ +C+ A L+ + + K++P F L L Q+ L+++ W +L+L + L FE
Sbjct: 239 IKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFE 298
Query: 308 TVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSK 367
V I+ + + G L LQ + K
Sbjct: 299 DELVYADDY---IMDEDQSKLAGLLDLNNAILQ-----------------------LVKK 332
Query: 368 CWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFI 427
S+ + +E+ LK L N D ++ V+ +Q LQ + L ++ H R
Sbjct: 333 YKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAG 392
Query: 428 ELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI 470
++ TL LLR + + + + G V M + LEML K+
Sbjct: 393 KMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV 435
>gi|238550159 estrogen-related receptor beta [Homo sapiens]
Length = 508
Score = 47.8 bits (112), Expect = 2e-05
Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 26/223 (11%)
Query: 248 LKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRNCWASLLMLELAQDRLQFE 307
+K+ +C+ A L+ + + K++P F L L Q+ L+++ W +L+L + L ++
Sbjct: 237 IKALTTLCDLADRELVVIIGWAKHIPGFSSLSLGDQMSLLQSAWMEILILGIVYRSLPYD 296
Query: 308 TVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEARKVPSASQVQAIKCFLSK 367
V + ++ +R +AI + +
Sbjct: 297 DKLV--------------------------YAEDYIMDEEHSRLAGLLELYRAILQLVRR 330
Query: 368 CWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQILSEHTRMTHQGPHDRFI 427
L + +E+ LK L N D ++ ++ +Q LQ + L ++ R
Sbjct: 331 YKKLKVEKEEFVTLKALALANSDSMYIEDLEAVQKLQDLLHEALQDYELSQRHEEPWRTG 390
Query: 428 ELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTKI 470
+L TL LLR A + + + G V M + LEML K+
Sbjct: 391 KLLLTLPLLRQTAAKAVQHFYSVKLQGKVPMHKLFLEMLEAKV 433
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,384,584
Number of Sequences: 37866
Number of extensions: 1048194
Number of successful extensions: 3310
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3172
Number of HSP's gapped (non-prelim): 133
length of query: 470
length of database: 18,247,518
effective HSP length: 106
effective length of query: 364
effective length of database: 14,233,722
effective search space: 5181074808
effective search space used: 5181074808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.