Search of human proteins with 4885521

Search of human proteins with 4885521

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4885521 neuronatin isoform alpha [Homo sapiens]
         (81 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4885521 neuronatin isoform alpha [Homo sapiens]                    166   5e-42
gi|32307136 neuronatin isoform beta [Homo sapiens]                     92   1e-19
gi|31542671 liver regeneration p-53 related protein [Homo sapiens]     31   0.19 

>gi|4885521 neuronatin isoform alpha [Homo sapiens]
          Length = 81

 Score =  166 bits (419), Expect = 5e-42
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MAAVAAASAELLIIGWYIFRVLLQVFLECCIYWVGFAFRNPPGTQPIARSEVFRYSLQKL 60
          MAAVAAASAELLIIGWYIFRVLLQVFLECCIYWVGFAFRNPPGTQPIARSEVFRYSLQKL
Sbjct: 1  MAAVAAASAELLIIGWYIFRVLLQVFLECCIYWVGFAFRNPPGTQPIARSEVFRYSLQKL 60

Query: 61 AYTVSRTGRQVLGERRQRAPN 81
          AYTVSRTGRQVLGERRQRAPN
Sbjct: 61 AYTVSRTGRQVLGERRQRAPN 81


>gi|32307136 neuronatin isoform beta [Homo sapiens]
          Length = 54

 Score = 91.7 bits (226), Expect = 1e-19
 Identities = 54/81 (66%), Positives = 54/81 (66%), Gaps = 27/81 (33%)

Query: 1  MAAVAAASAELLIIGWYIFRVLLQVFLECCIYWVGFAFRNPPGTQPIARSEVFRYSLQKL 60
          MAAVAAASAELLIIGWYIFRVLLQVF                           RYSLQKL
Sbjct: 1  MAAVAAASAELLIIGWYIFRVLLQVF---------------------------RYSLQKL 33

Query: 61 AYTVSRTGRQVLGERRQRAPN 81
          AYTVSRTGRQVLGERRQRAPN
Sbjct: 34 AYTVSRTGRQVLGERRQRAPN 54


>gi|31542671 liver regeneration p-53 related protein [Homo
          sapiens]
          Length = 540

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 1  MAAVAAASAELLIIGWYIFRVLLQVFLECCIYWV 34
          MA   AASAEL +IGW IF +LL   L  C  +V
Sbjct: 1  MATSGAASAEL-VIGWCIFGLLLLAILAFCWIYV 33


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,904,741
Number of Sequences: 37866
Number of extensions: 101511
Number of successful extensions: 250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 3
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.