Search of human proteins with 4557335

Search of human proteins with 4557335

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4557335 aspartoacylase [Homo sapiens]
         (313 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4557335 aspartoacylase [Homo sapiens]                              654   0.0  
gi|189339202 aspartoacylase [Homo sapiens]                            654   0.0  
gi|18087825 aspartoacylase 3 [Homo sapiens]                           289   3e-78
gi|4507103 small nuclear RNA activating complex, polypeptide 2, ...    30   2.8  
gi|51479152 ATP synthase, H+ transporting, mitochondrial F0 comp...    29   4.7  

>gi|4557335 aspartoacylase [Homo sapiens]
          Length = 313

 Score =  654 bits (1687), Expect = 0.0
 Identities = 313/313 (100%), Positives = 313/313 (100%)

Query: 1   MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK 60
           MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK
Sbjct: 1   MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK 60

Query: 61  CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS 120
           CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS
Sbjct: 61  CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS 120

Query: 121 NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG 180
           NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG
Sbjct: 121 NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG 180

Query: 181 PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA 240
           PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA
Sbjct: 181 PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA 240

Query: 241 AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK 300
           AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK
Sbjct: 241 AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK 300

Query: 301 LTLNAKSIRCCLH 313
           LTLNAKSIRCCLH
Sbjct: 301 LTLNAKSIRCCLH 313


>gi|189339202 aspartoacylase [Homo sapiens]
          Length = 313

 Score =  654 bits (1687), Expect = 0.0
 Identities = 313/313 (100%), Positives = 313/313 (100%)

Query: 1   MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK 60
           MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK
Sbjct: 1   MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK 60

Query: 61  CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS 120
           CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS
Sbjct: 61  CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS 120

Query: 121 NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG 180
           NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG
Sbjct: 121 NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG 180

Query: 181 PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA 240
           PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA
Sbjct: 181 PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA 240

Query: 241 AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK 300
           AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK
Sbjct: 241 AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK 300

Query: 301 LTLNAKSIRCCLH 313
           LTLNAKSIRCCLH
Sbjct: 301 LTLNAKSIRCCLH 313


>gi|18087825 aspartoacylase 3 [Homo sapiens]
          Length = 319

 Score =  289 bits (739), Expect = 3e-78
 Identities = 138/308 (44%), Positives = 192/308 (62%)

Query: 1   MTSCHIAEEHIQKVAIFGGTHGNELTGVFLVKHWLENGAEIQRTGLEVKPFITNPRAVKK 60
           M S  +  E +++VA+ GGTHGNE++GV+L +HWL   AE+QR      P + NP A   
Sbjct: 1   MCSLPVPREPLRRVAVTGGTHGNEMSGVYLARHWLHAPAELQRASFSAVPVLANPAATSG 60

Query: 61  CTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRAQEINHLFGPKDSEDSYDIIFDLHNTTS 120
           C RY+D DLNR F    L  + + D PYEV RA+E+N L GPK S  ++D + DLHNTT+
Sbjct: 61  CRRYVDHDLNRTFTSSFLNSRPTPDDPYEVTRARELNQLLGPKASGQAFDFVLDLHNTTA 120

Query: 121 NMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLIEHPSLKYATTRSIAKYPVGIEVG 180
           NMG  LI + S   F + +  +++     L C V+L +    +     S+AK  +G+E+G
Sbjct: 121 NMGTCLIAKSSHEVFAMHLCRHLQLQYPELSCQVFLYQRSGEESYNLDSVAKNGLGLELG 180

Query: 181 PQPQGVLRADILDQMRKMIKHALDFIHHFNEGKEFPPCAIEVYKIIEKVDYPRDENGEIA 240
           PQPQGVLRADI  +MR ++   LDFI  FN+G  FP   +E Y+ +  VD+PR E G +A
Sbjct: 181 PQPQGVLRADIFSRMRTLVATVLDFIELFNQGTAFPAFEMEAYRPVGVVDFPRTEAGHLA 240

Query: 241 AIIHPNLQDQDWKPLHPGDPMFLTLDGKTIPLGGDCTVYPVFVNEAAYYEKKEAFAKTTK 300
             +HP LQD+D++PL PG P+F    G+ +   G+ TVYPVF+NEAAYYEK  AF +T K
Sbjct: 241 GTVHPQLQDRDFQPLQPGAPIFQMFSGEDLLYEGESTVYPVFINEAAYYEKGVAFVQTEK 300

Query: 301 LTLNAKSI 308
            T    ++
Sbjct: 301 FTFTVPAM 308


>gi|4507103 small nuclear RNA activating complex, polypeptide 2,
           45kDa [Homo sapiens]
          Length = 334

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 101 GPKDSED---SYDIIFDLHNTTSNMGCTLILEDSRNNFLIQMFHYIKTSLAPLPCYVYLI 157
           GP   ED    ++ I+   ++ S  G +  L  + +  ++ +   +   L  LPC   L+
Sbjct: 195 GPSTEEDFAVDFEKIYKYLSSVSRSGRSPELSAAESAVVLDLLMSLPEELPLLPCTA-LV 253

Query: 158 EHPSLKYATTRSIAKYPVGIEVGPQPQG 185
           EH +  Y    +    P G  +GP  +G
Sbjct: 254 EHMTETYLRLTAPQPIPAGGSLGPAAEG 281


>gi|51479152 ATP synthase, H+ transporting, mitochondrial F0
           complex, subunit d isoform b [Homo sapiens]
          Length = 137

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 34  WLENGAEIQRTGLEVKPFITNPRAVKKCTRYIDCDLNRIFDLENLGKKMSEDLPYEVRRA 93
           W    A + + GL V  F    + VK C  ++     RI + E   +KM   +P++    
Sbjct: 54  WAYYKANVAKAGL-VDDF---EKKVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTI 109

Query: 94  QEINHLFGPKDSEDSYDIIFDLHNTTSNM 122
           +++N  F P+   D     +  H    N+
Sbjct: 110 EDLNEAF-PETKLDKKKYPYWPHQPIENL 137


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.140    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,516,098
Number of Sequences: 37866
Number of extensions: 577003
Number of successful extensions: 1020
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 5
length of query: 313
length of database: 18,247,518
effective HSP length: 102
effective length of query: 211
effective length of database: 14,385,186
effective search space: 3035274246
effective search space used: 3035274246
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.