Search of human proteins with 4507231

Search of human proteins with 4507231

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507231 single-stranded DNA binding protein 1 [Homo sapiens]
         (148 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507231 single-stranded DNA binding protein 1 [Homo sapiens]       296   3e-81
gi|239747264 PREDICTED: hypothetical protein LOC100287517 [Homo ...   201   2e-52
gi|226371620 transcription factor 7-like 2 isoform 3 [Homo sapiens]    28   2.8  
gi|10863929 ribonuclease L [Homo sapiens]                              27   8.2  

>gi|4507231 single-stranded DNA binding protein 1 [Homo sapiens]
          Length = 148

 Score =  296 bits (759), Expect = 3e-81
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 60
           MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA
Sbjct: 1   MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 60

Query: 61  TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 120
           TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM
Sbjct: 61  TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 120

Query: 121 DKNNVRRQATTIIADNIIFLSDQTKEKE 148
           DKNNVRRQATTIIADNIIFLSDQTKEKE
Sbjct: 121 DKNNVRRQATTIIADNIIFLSDQTKEKE 148


>gi|239747264 PREDICTED: hypothetical protein LOC100287517 [Homo
           sapiens]
          Length = 148

 Score =  201 bits (510), Expect = 2e-52
 Identities = 106/152 (69%), Positives = 119/152 (78%), Gaps = 10/152 (6%)

Query: 1   MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 60
           MF+RPVLQVL QFVRHES+T +SLVLERSLN + LLG+VG D ++RQ+EG  P TIFSLA
Sbjct: 1   MFQRPVLQVLHQFVRHESKTASSLVLERSLNCMQLLGQVGXDLIMRQMEGNTPXTIFSLA 60

Query: 61  TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 120
           TNEMW SGD +VYQ+GDV  K TWHRIS F PG  DVA+Q     SRIY E K+DYGEY 
Sbjct: 61  TNEMWXSGDRKVYQMGDVCXKMTWHRISAFXPGPGDVAHQ-----SRIYAEEKVDYGEYT 115

Query: 121 DKNNVRRQATTI-----IADNIIFLSDQTKEK 147
           DKNN RRQATTI     IAD+ IFLSDQTKEK
Sbjct: 116 DKNNGRRQATTIIFPAMIADSRIFLSDQTKEK 147


>gi|226371620 transcription factor 7-like 2 isoform 3 [Homo sapiens]
          Length = 489

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 18  SETTTSLVLERSLNRVHLLGRVGQD--------PVLRQVEGKNPVTIFSLATNEMWRSGD 69
           S+ T S  + R + R H L +VG+         PV++     +P+T     +NE +  G+
Sbjct: 180 SDFTVSTQVFRDMKRSHSLQKVGEPWCIESNKVPVVQHPHHVHPLTPLITYSNEHFTPGN 239

Query: 70  SEVYQLGDVSQKT 82
              +   DV  KT
Sbjct: 240 PPPHLPADVDPKT 252


>gi|10863929 ribonuclease L [Homo sapiens]
          Length = 741

 Score = 26.6 bits (57), Expect = 8.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 33  VHLLGRVGQDPVLRQVEGKNPVTIFSLA 60
           V LL R G DPVLR+  G  P  + ++A
Sbjct: 75  VELLLRHGADPVLRKKNGATPFILAAIA 102


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,900,058
Number of Sequences: 37866
Number of extensions: 186866
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 4
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.