Search of human proteins with 13027820

Search of human proteins with 13027820

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13027820 growth hormone 1 isoform 5 [Homo sapiens]
         (30 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13027820 growth hormone 1 isoform 5 [Homo sapiens]                  68   1e-12
gi|13027824 growth hormone 2 isoform 2 [Homo sapiens]                  44   3e-05
gi|12408685 chorionic somatomammotropin hormone 1 isoform 2 [Hom...    40   3e-04

>gi|13027820 growth hormone 1 isoform 5 [Homo sapiens]
          Length = 30

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 1  MATEAGRWQPPDWADLQADLQQVRHKLTQR 30
          MATEAGRWQPPDWADLQADLQQVRHKLTQR
Sbjct: 1  MATEAGRWQPPDWADLQADLQQVRHKLTQR 30


>gi|13027824 growth hormone 2 isoform 2 [Homo sapiens]
          Length = 256

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 18/20 (90%), Positives = 19/20 (95%)

Query: 4   EAGRWQPPDWADLQADLQQV 23
           EAGRWQPPDWADLQ+ LQQV
Sbjct: 237 EAGRWQPPDWADLQSVLQQV 256


>gi|12408685 chorionic somatomammotropin hormone 1 isoform 2 [Homo
           sapiens]
          Length = 256

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 18/20 (90%), Positives = 18/20 (90%)

Query: 4   EAGRWQPPDWADLQADLQQV 23
           EAGR QPPDWAD QADLQQV
Sbjct: 237 EAGRRQPPDWADPQADLQQV 256


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.128    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,234,755
Number of Sequences: 37866
Number of extensions: 17056
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 3
length of query: 30
length of database: 18,247,518
effective HSP length: 5
effective length of query: 25
effective length of database: 18,058,188
effective search space: 451454700
effective search space used: 451454700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.