Search of human proteins with 42822893

Search of human proteins with 42822893

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42822893 alpha-methylacyl-CoA racemase isoform 2 [Homo
sapiens]
         (198 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42822893 alpha-methylacyl-CoA racemase isoform 2 [Homo sapiens]    403   e-113
gi|42794625 alpha-methylacyl-CoA racemase isoform 1 [Homo sapiens]    259   8e-70
gi|13376042 dermal papilla derived protein 13 [Homo sapiens]           57   1e-08
gi|39204547 testis spermatogenesis apoptosis-related protein 6 [...    32   0.27 
gi|14790124 caspase 9 isoform alpha preproprotein [Homo sapiens]       31   0.60 
gi|22749005 family with sequence similarity 187, member B [Homo ...    29   2.3  

>gi|42822893 alpha-methylacyl-CoA racemase isoform 2 [Homo sapiens]
          Length = 198

 Score =  403 bits (1035), Expect = e-113
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP 60
           MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP
Sbjct: 1   MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP 60

Query: 61  RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA 120
           RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA
Sbjct: 61  RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA 120

Query: 121 GHDINYLALSGGRNSIFKFFSVENSEIESVGSTSRTEHVGWWSTFLYDLQDSRWGIHGCW 180
           GHDINYLALSGGRNSIFKFFSVENSEIESVGSTSRTEHVGWWSTFLYDLQDSRWGIHGCW
Sbjct: 121 GHDINYLALSGGRNSIFKFFSVENSEIESVGSTSRTEHVGWWSTFLYDLQDSRWGIHGCW 180

Query: 181 SNRTPVLRAADQRTWTKV 198
           SNRTPVLRAADQRTWTKV
Sbjct: 181 SNRTPVLRAADQRTWTKV 198


>gi|42794625 alpha-methylacyl-CoA racemase isoform 1 [Homo sapiens]
          Length = 382

 Score =  259 bits (663), Expect = 8e-70
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP 60
           MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP
Sbjct: 1   MALQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLGRGKRSLVLDLKQP 60

Query: 61  RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA 120
           RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA
Sbjct: 61  RGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLA 120

Query: 121 GHDINYLALSG 131
           GHDINYLALSG
Sbjct: 121 GHDINYLALSG 131


>gi|13376042 dermal papilla derived protein 13 [Homo sapiens]
          Length = 434

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 52/144 (36%)

Query: 3   LQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLG--------------- 47
           L+G+ +++L+ +  GPF  M L D GA V++V+RPG+  D    G               
Sbjct: 48  LEGVKILDLTRVLAGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVN 107

Query: 48  RGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARL 107
           R K+S+ +++K P+G                                      ++IY  +
Sbjct: 108 RNKKSIAVNIKDPKGV-------------------------------------KIIYCSI 130

Query: 108 SGFGQSGSFCRLAGHDINYLALSG 131
           +G+GQ+G   + AG+D    A+SG
Sbjct: 131 TGYGQTGPISQRAGYDAVASAVSG 154


>gi|39204547 testis spermatogenesis apoptosis-related protein 6
           [Homo sapiens]
          Length = 316

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 55  LDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARL---SGFG 111
           L   +P  A + R++ +  DVL +P +RG+ +K   G E L+   P    ++    +G+ 
Sbjct: 34  LKSNEPSSAEIFRQIAEAYDVLSDPMKRGIYDKF--GEEGLKGGIPLEFGSQTPWTTGYV 91

Query: 112 QSGSFCRLAGHDINYLALSGGRNSIFKFFSVENSEIE 148
             G   ++      +    GG N   +FF  E SE++
Sbjct: 92  FHGKPEKV------FHEFFGGNNPFSEFFDAEGSEVD 122


>gi|14790124 caspase 9 isoform alpha preproprotein [Homo sapiens]
          Length = 416

 Score = 31.2 bits (69), Expect = 0.60
 Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 29/120 (24%)

Query: 36  RPGSRYDVSRLGRGKR-----SLVLDLKQPRGAAVL----------------------RR 68
           RP    D+ R G G R      L++DL + RG+  L                      R+
Sbjct: 36  RPHMIEDIQRAGSGSRRDQARQLIIDL-ETRGSQALPLFISCLEDTGQDMLASFLRTNRQ 94

Query: 69  LCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARLSGFGQSGSFCRLAGH-DINYL 127
             K S   LE     V+      PE+L+ E PR +     GFG  G+   L G+ D+ Y+
Sbjct: 95  AAKLSKPTLENLTPVVLRPEIRKPEVLRPETPRPVDIGSGGFGDVGALESLRGNADLAYI 154


>gi|22749005 family with sequence similarity 187, member B [Homo
           sapiens]
          Length = 369

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 113 SGSFCR---LAGHDINYLALSGGRNSIFKFFSVENSEIESVGSTSRTEHVGWWSTFLYDL 169
           SG  C+   L+G+DI     S G +  + F   +   + S+ + S  E +   S  + D 
Sbjct: 26  SGKQCQQALLSGNDILLYCNSSGAHWYYLFTQGKKGRLTSLTNISNMEIMPEGSLLIKDP 85

Query: 170 QDSRWGIHGCWS 181
             S+ G++ CW+
Sbjct: 86  LPSQTGLYHCWN 97


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,483,608
Number of Sequences: 37866
Number of extensions: 312075
Number of successful extensions: 475
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 8
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.