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Search of human proteins with 40805108
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40805108 putative small membrane protein NID67 [Homo
sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40805108 putative small membrane protein NID67 [Homo sapiens] 289 4e-79
gi|60593054 hypothetical protein LOC494514 [Homo sapiens] 38 0.002
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 38 0.003
gi|17511255 poly(A) binding protein interacting protein 1 isofor... 37 0.005
gi|120587019 zinc finger protein 318 [Homo sapiens] 37 0.005
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 37 0.006
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 36 0.011
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 36 0.011
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 35 0.014
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 35 0.018
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 35 0.018
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 35 0.024
gi|33356148 formin-like 1 [Homo sapiens] 35 0.024
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap... 34 0.031
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 34 0.041
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 34 0.041
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 34 0.041
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 34 0.041
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 34 0.041
gi|50843820 sickle tail isoform 1 [Homo sapiens] 34 0.041
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 34 0.041
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 34 0.041
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 34 0.041
gi|148612857 sickle tail isoform 3 [Homo sapiens] 33 0.054
gi|148612813 sickle tail isoform 2 [Homo sapiens] 33 0.054
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 33 0.054
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 33 0.054
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 33 0.054
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 33 0.070
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 33 0.070
>gi|40805108 putative small membrane protein NID67 [Homo sapiens]
Length = 135
Score = 289 bits (740), Expect = 4e-79
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MSTATRRVCGNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQ 60
MSTATRRVCGNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQ
Sbjct: 1 MSTATRRVCGNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQ 60
Query: 61 QPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPCSPGDPEKHRA 120
QPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPCSPGDPEKHRA
Sbjct: 61 QPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPCSPGDPEKHRA 120
Query: 121 IPDPGTFRRLAAIWE 135
IPDPGTFRRLAAIWE
Sbjct: 121 IPDPGTFRRLAAIWE 135
>gi|60593054 hypothetical protein LOC494514 [Homo sapiens]
Length = 123
Score = 38.1 bits (87), Expect = 0.002
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 10 GNVEGEPETPWS---LPSLAGSFLPERS--PQGTLEEELSWSCRG----PGT--GRSGGG 58
G + P + W LP++A + S P GTL + + R PG R+ G
Sbjct: 12 GRLRARPRSRWDAAYLPAVAAVCVARASHVPNGTLRFGVCKARRTMRPLPGRIEVRTKRG 71
Query: 59 PQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPC 110
PQ+P PE + +P LPP RG + L P + + C+ PC
Sbjct: 72 PQRPAAPERSPQP----RLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPC 119
Score = 26.6 bits (57), Expect = 6.6
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 31 PERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPE----PAARP 71
PERSPQ L S RGP SG RIP P RP
Sbjct: 78 PERSPQPRLPPSRHPSRRGPRRHLSGCSAPACRIPTGCRCPCGRP 122
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 37.7 bits (86), Expect = 0.003
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 27 GSFLPERSPQGTLEEELSWSCRG-PGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRS 85
G+ P R P + L+ + P SG P QP +P A +P + P P +S
Sbjct: 209 GTGSPARPPTPAQVQNLTLRTQQTPAAAASGPTPTQPVLPSLALKPTPGGSQPLPTPAQS 268
Query: 86 RGTFQELPRAEVPGLGVASSCQIPCSPGD 114
R T Q P P G+A S P GD
Sbjct: 269 RNTAQASPAGAKP--GIADSVMEPHKKGD 295
>gi|17511255 poly(A) binding protein interacting protein 1 isoform 1
[Homo sapiens]
Length = 479
Score = 37.0 bits (84), Expect = 0.005
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 48 RGPGTGRSGGGPQQPRIPEPAARPGRSCALPP----PGARRSRGTFQELPRAEVPGLGVA 103
R G GR GGGP+ P A R+ PP PG + Q PR P
Sbjct: 15 RSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQ--PRTTPP---PG 69
Query: 104 SSCQIPCSPGDPEKHRAIPD 123
+ C++P SP P + A+P+
Sbjct: 70 AQCEVPASPQRPSRPGALPE 89
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 37.0 bits (84), Expect = 0.005
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 56 GGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIP----CS 111
GGGP+ R ++ P R + PPP + S T PR+ G +S P S
Sbjct: 20 GGGPRSGRSSGSSSGPARRSSPPPPPSGSSSRTPARRPRSPSGHRGRRASPSPPRGRRVS 79
Query: 112 PGDPEKHRAIPDPGTFRRL 130
P P R P P RRL
Sbjct: 80 PSPPRARRGSPSPPRGRRL 98
Score = 27.7 bits (60), Expect = 2.9
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 23 PSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPAARPGRSCALPPPGA 82
PS + S P R P+ + P GR P PR + P R L PPG
Sbjct: 45 PSGSSSRTPARRPRSPSGHRGRRASPSPPRGRRVS-PSPPRARRGSPSPPRGRRLFPPGP 103
Query: 83 RRSRGTFQELPRAEVPGLGVASSCQIPCSPGDPEKHRAIP 122
RG+ + RA+ G PGD R P
Sbjct: 104 AGFRGSSRGESRADYARDGRGD------HPGDSGSRRRSP 137
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 36.6 bits (83), Expect = 0.006
Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 23/107 (21%)
Query: 13 EGEPETPWS--LPSLAGSFLP--ERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPA 68
+GEP P S LP G P ER PQG E+ G G P P P P
Sbjct: 1116 KGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEK--------GDQGFQGQPGFPGPPGPP 1167
Query: 69 ARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPCSPGDP 115
PG+ + PPG P+AE G+ +P SPG P
Sbjct: 1168 GFPGKVGSPGPPG-----------PQAEKGSEGIRGPSGLPGSPGPP 1203
Score = 27.7 bits (60), Expect = 2.9
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 51 GTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRA---EVPGLGVASSCQ 107
G GG P P RPG C + P G + G A PGL
Sbjct: 402 GEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIG 461
Query: 108 IPCSPGDP 115
+P +PGDP
Sbjct: 462 LPGTPGDP 469
Score = 27.7 bits (60), Expect = 2.9
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 13 EGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPAARPG 72
+G P P L + A FL +LE + RG + G P +P P PG
Sbjct: 979 QGIPGVP-GLDNCAQCFL-------SLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPG 1030
Query: 73 RSCALPPPGARRSRG 87
+ PPG R S G
Sbjct: 1031 QRGEEGPPGMRGSPG 1045
Score = 26.9 bits (58), Expect = 5.0
Identities = 25/84 (29%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 57 GGPQQPRIPEPAARPGRSCAL-------------PP-----PGARRSRGTFQELPRAEVP 98
G P P P P PG A PP PGA +G E RA +P
Sbjct: 1329 GQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMP 1388
Query: 99 GLGVASSCQIPCSPGDPEKHRAIP 122
G S P P P R P
Sbjct: 1389 GGPGKSGSMGPVGPPGPAGERGHP 1412
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 35.8 bits (81), Expect = 0.011
Identities = 42/117 (35%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 14 GEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQP-RIPEPAAR-- 70
G P P PS +G+ R PQ L S P GRSG P P P P R
Sbjct: 317 GPPPLP---PSSSGNDETPRLPQRNLSLSSSTPPL-PSPGRSGPLPPPPSERPPPPVRDP 372
Query: 71 PGRSCAL-PPPGARRSRGTFQELPRA-EVPG-LGVASSCQIPCSPGDPEKHRAIPDP 124
PGRS L PPP R+ T + LP ++P GV S P P P++ A P
Sbjct: 373 PGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGAPP 429
Score = 33.1 bits (74), Expect = 0.070
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 50 PGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIP 109
P T R Q P P P +RPG PPP S G E PR L ++SS
Sbjct: 295 PSTPRPSASSQAPPPPPPPSRPG-----PPPLPPSSSGN-DETPRLPQRNLSLSSSTPPL 348
Query: 110 CSPG 113
SPG
Sbjct: 349 PSPG 352
Score = 28.5 bits (62), Expect = 1.7
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 49 GPGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELP 93
G + RSG PR P P RP PPP + R FQ+ P
Sbjct: 406 GVDSPRSG-----PRPPLPPDRPSAGAPPPPPPSTSIRNGFQDSP 445
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 35.8 bits (81), Expect = 0.011
Identities = 42/117 (35%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 14 GEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQP-RIPEPAAR-- 70
G P P PS +G+ R PQ L S P GRSG P P P P R
Sbjct: 317 GPPPLP---PSSSGNDETPRLPQRNLSLSSSTPPL-PSPGRSGPLPPPPSERPPPPVRDP 372
Query: 71 PGRSCAL-PPPGARRSRGTFQELPRA-EVPG-LGVASSCQIPCSPGDPEKHRAIPDP 124
PGRS L PPP R+ T + LP ++P GV S P P P++ A P
Sbjct: 373 PGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGAPP 429
Score = 33.1 bits (74), Expect = 0.070
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 50 PGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIP 109
P T R Q P P P +RPG PPP S G E PR L ++SS
Sbjct: 295 PSTPRPSASSQAPPPPPPPSRPG-----PPPLPPSSSGN-DETPRLPQRNLSLSSSTPPL 348
Query: 110 CSPG 113
SPG
Sbjct: 349 PSPG 352
Score = 28.5 bits (62), Expect = 1.7
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 49 GPGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELP 93
G + RSG PR P P RP PPP + R FQ+ P
Sbjct: 406 GVDSPRSG-----PRPPLPPDRPSAGAPPPPPPSTSIRNGFQDSP 445
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 35.4 bits (80), Expect = 0.014
Identities = 33/117 (28%), Positives = 40/117 (34%), Gaps = 8/117 (6%)
Query: 23 PSLAGSFLPERSPQGT-------LEEELSWSCRGPGTGRSGGGPQQPRIPEPAARPGRSC 75
P L+G P+ P G L SW P GR+GGG P P R
Sbjct: 121 PPLSGGLSPDPKPGGAPTSSRRPLLSSPSWGGPEP-EGRAGGGIPGSSSPHPGTGSRRLK 179
Query: 76 ALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPCSPGDPEKHRAIPDPGTFRRLAA 132
PPP A + T G G S P S G P + GT ++A
Sbjct: 180 VAPPPPAPKPCKTVTTSGAKAGGGKGAGSRLSWPESEGKPRVKGSKSSAGTGASVSA 236
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 35.0 bits (79), Expect = 0.018
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 32 ERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQE 91
E S + +EE + G GR G QP+ P P PG+ PP G +S+G
Sbjct: 17 ESSSEDVSQEESLFLISGKPEGRRPQGGNQPQRPPPP--PGKPQGPPPQGGNQSQGPPPP 74
Query: 92 LPRAE-VPGLGVASSCQIPCSPGDPEK 117
+ E P G S P PG PE+
Sbjct: 75 PGKPEGRPPQGGNQSQGPPPHPGKPER 101
Score = 32.3 bits (72), Expect = 0.12
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 10 GNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGR------SGGGPQQPR 63
G EG P + A S P PQG ++E + P G+ +GG PQQP+
Sbjct: 160 GKPEGPPPQEGNKSRSARS--PPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQ 217
Query: 64 IPEPAARPGRSCALPPPGARRSR 86
P PA +P + PP G R R
Sbjct: 218 AP-PAGKP-QGPPPPPQGGRPPR 238
Score = 31.6 bits (70), Expect = 0.20
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 35 PQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPR 94
PQG + + G GR G Q + P P PG+ PP G +S+GT +
Sbjct: 62 PQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPP--HPGKPERPPPQGGNQSQGTPPPPGK 119
Query: 95 AE-VPGLGVASSCQIPCSPGDPEK 117
E P G S + P PG PE+
Sbjct: 120 PERPPPQGGNQSHRPPPPPGKPER 143
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 35.0 bits (79), Expect = 0.018
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 12 VEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRG----PGTGRSGGGPQQPRIPEP 67
V EP TP+S+ A L ER +G +E + G G+G SG G ++P P P
Sbjct: 510 VAAEPGTPFSIGRFATLTLQERRDRGAEKEHKRYHSLGNISRGGSGGSGSGGEKPSGPVP 569
Query: 68 AAR 70
+R
Sbjct: 570 RSR 572
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 34.7 bits (78), Expect = 0.024
Identities = 36/110 (32%), Positives = 41/110 (37%), Gaps = 14/110 (12%)
Query: 17 ETPWSLPSLAGSFLP--ERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPAARPGRS 74
ETP S P A P E SP EEL S + S + P P P P
Sbjct: 533 ETPLSPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESP--- 589
Query: 75 CALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPCSPGDPEKHRAIPDP 124
PPP A R F+E P + P + P SP PE R P P
Sbjct: 590 -MSPPPEASRLFPPFEESPLSPPPE-------ESPLSP-PPEASRLSPPP 630
Score = 28.9 bits (63), Expect = 1.3
Identities = 29/105 (27%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 10 GNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGG-GPQQPRIPEPA 68
G G+P++ + G+F P SP G TG S G P +P P
Sbjct: 2569 GPTLGKPQST-NYTVATGNFHPSGSPLGP---------SSGSTGESYGLSPLRPPSVLPP 2618
Query: 69 ARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPCSPG 113
P S GA + G + + E PG G+ SS PG
Sbjct: 2619 PAPDGSLPYLSHGASQRSGITSPVEKREDPGTGMGSSLATAELPG 2663
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 34.7 bits (78), Expect = 0.024
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
Query: 55 SGGGPQQPRIPE--------PAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSC 106
SGG P +P PAA P A PPP + QE P + P
Sbjct: 512 SGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPP-------- 563
Query: 107 QIPCSPGDPEKHRAIPDPG 125
Q P PG PE A P PG
Sbjct: 564 QAPPLPGSPEPPPAPPLPG 582
>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
sapiens]
Length = 443
Score = 34.3 bits (77), Expect = 0.031
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 54 RSGGGPQQPRIPEPAARPGRSCALP--PPGARRSRGTFQELPRAEVPGLGVASSCQIPCS 111
R PQ+ P PA PG ALP PG RR R PR G A ++
Sbjct: 38 RPASAPQRHPAPVPARWPGPG-ALPGASPGVRRRR---PPRPRPRAGRRGAARLEKLARR 93
Query: 112 PGDPEKHRAIPDPGTFRRLAAI 133
PG+P +A+ P + LA +
Sbjct: 94 PGEPRSFQAVLPPELWIHLAVV 115
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 33.9 bits (76), Expect = 0.041
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 53 GRSG--GGPQQPRIPEPAARPGRSCALP-PPGARRSRGTFQELPRAEVPG-LGVASSCQI 108
G++G GGP P +P P PG+ LP PPGA G+ PG G
Sbjct: 618 GQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGS------PGFPGPQGDRGFPGT 671
Query: 109 PCSPGDPEKHRAIPDPG 125
P PG P + A+ PG
Sbjct: 672 PGRPGLPGEKGAVGQPG 688
Score = 28.5 bits (62), Expect = 1.7
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 50 PGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGV------- 102
PG S GG P P PG PG +G E +A PG+G+
Sbjct: 1007 PGPKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEK 1066
Query: 103 --ASSCQIPCSPGDPEKHRAIPDPG 125
P SPG+ + +I PG
Sbjct: 1067 GDQGIAGFPGSPGEKGEKGSIGIPG 1091
Score = 26.2 bits (56), Expect = 8.6
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 9 CGNVEGE--PETPWSLPSLAGSFLPERSP--QGTLEEELSWSCRGPGTGRSG--GGPQQP 62
C +GE P P LP AG+ P P +G E L PG G G P P
Sbjct: 125 CNGTKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILG---HVPGMLLKGERGFPGIP 181
Query: 63 RIPEPAARPGRSCALPPPG 81
P P PG + PPG
Sbjct: 182 GTPGPPGLPGLQGPVGPPG 200
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.9 bits (76), Expect = 0.041
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 10 GNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRS---GGGPQQP-RIP 65
G+ G P++ LP + P+ P ++ R GR+ G GP QP +P
Sbjct: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLP 247
Query: 66 EPAARPGRSCALPPPGARRSR---GTFQELPRAEVPGLGVASSC-QIPCSPGDPEKHRAI 121
P P S A P P R R T PR P S C + GD ++ +
Sbjct: 248 LPG--PAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSS 305
Query: 122 PDPGT 126
P T
Sbjct: 306 QPPAT 310
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.9 bits (76), Expect = 0.041
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 10 GNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRS---GGGPQQP-RIP 65
G+ G P++ LP + P+ P ++ R GR+ G GP QP +P
Sbjct: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLP 247
Query: 66 EPAARPGRSCALPPPGARRSR---GTFQELPRAEVPGLGVASSC-QIPCSPGDPEKHRAI 121
P P S A P P R R T PR P S C + GD ++ +
Sbjct: 248 LPG--PAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSS 305
Query: 122 PDPGT 126
P T
Sbjct: 306 QPPAT 310
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.9 bits (76), Expect = 0.041
Identities = 34/125 (27%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 10 GNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRS---GGGPQQP-RIP 65
G+ G P++ LP + P+ P ++ R GR+ G GP QP +P
Sbjct: 188 GSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQPAHLP 247
Query: 66 EPAARPGRSCALPPPGARRSR---GTFQELPRAEVPGLGVASSC-QIPCSPGDPEKHRAI 121
P P S A P P R R T PR P S C + GD ++ +
Sbjct: 248 LPG--PAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSS 305
Query: 122 PDPGT 126
P T
Sbjct: 306 QPPAT 310
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 33.9 bits (76), Expect = 0.041
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 50 PGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIP 109
PG G G P +P +P PG + PPG + +G ++ PGL P
Sbjct: 1411 PGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSED----GAPGL--------P 1458
Query: 110 CSPGDPEKHRAIPDPG 125
PG P + PG
Sbjct: 1459 GQPGSPGEQGPRGPPG 1474
Score = 29.6 bits (65), Expect = 0.78
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 50 PGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIP 109
PG G P +P IP R G PG R RG E R E G P
Sbjct: 2027 PGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGE--RGEQGRDGPPGLPGTP 2084
Query: 110 CSPGDPEKHRAIPDPG 125
PG P ++ +PG
Sbjct: 2085 GPPGPPGPKVSVDEPG 2100
Score = 28.1 bits (61), Expect = 2.3
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 22 LPSLAGS-----FLPERSPQGTLEEELSWSCRGPGTGRS-GGGPQQPRIPEPAARPGRSC 75
LP L G+ F + P+G + + GP R G P + IP P PG
Sbjct: 2393 LPGLPGAPGVVGFPGQTGPRGEMGQP------GPSGERGLAGPPGREGIPGPLGPPGPPG 2446
Query: 76 ALPPPGARRSRGTFQELPRAEVPG 99
++ PPGA +G + P +PG
Sbjct: 2447 SVGPPGASGLKGDKGD-PGVGLPG 2469
Score = 26.2 bits (56), Expect = 8.6
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 17/85 (20%)
Query: 14 GEPETPWSLPSLAGS-FLP-------ERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRI- 64
G P TP + P L GS LP ER P+G E PG G GP P
Sbjct: 1314 GNPGTPGA-PGLKGSPGLPGPRGDPGERGPRGPKGEP-----GAPGQVIGGEGPGLPGRK 1367
Query: 65 --PEPAARPGRSCALPPPGARRSRG 87
P P+ PG L PG R G
Sbjct: 1368 GDPGPSGPPGPRGPLGDPGPRGPPG 1392
Score = 26.2 bits (56), Expect = 8.6
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 50 PGTGRSGGGPQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIP 109
PGT + G P +P P PG P G + G ++ E PGL P
Sbjct: 1316 PGTPGAPGLKGSPGLPGPRGDPGER---GPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGP 1372
Query: 110 CSPGDPEKHRAIPDP 124
P P P P
Sbjct: 1373 SGPPGPRGPLGDPGP 1387
>gi|50843820 sickle tail isoform 1 [Homo sapiens]
Length = 1943
Score = 33.9 bits (76), Expect = 0.041
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 28/100 (28%)
Query: 50 PGTGRSG--GGPQQPRIPEPAARPGRSCALPPPG-----------------ARRSRGTFQ 90
P R G G PQ R+P P + R L PG A++S G F+
Sbjct: 1732 PSASRKGSSGAPQTSRMPVPMSAKNRPGTLDKPGKQSKLQDPRQYRQANGSAKKSGGDFK 1791
Query: 91 ----ELPRAEVPGLGVAS--SCQIPCSPGDPEKHRAIPDP 124
LP +++P L +S S +P S GD +P+P
Sbjct: 1792 PTSPSLPASKIPALSPSSGKSSSLPSSSGDSSN---LPNP 1828
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 33.9 bits (76), Expect = 0.041
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 10 GNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPAA 69
G +G P S A S P PQG ++E + + +GP +GG PQQP+ P PA
Sbjct: 258 GKPQGPPAQGGSKSQSARS--PPGKPQGPPQQEGN-NPQGPPPP-AGGNPQQPQAP-PAG 312
Query: 70 RPGRSCALPPPGARRSR 86
+P + PP G R SR
Sbjct: 313 QP-QGPPRPPQGGRPSR 328
Score = 28.9 bits (63), Expect = 1.3
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 3/116 (2%)
Query: 2 STATRRVCGNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQ 61
S + R G +G P + P G P PQG + + P G+ G P Q
Sbjct: 87 SRSPRSPPGKPQGPPPQGGNQPQ--GPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQ 144
Query: 62 -PRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPCSPGDPE 116
+ P + PG+ PP G + +G + + P Q P PG P+
Sbjct: 145 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQ 200
Score = 28.5 bits (62), Expect = 1.7
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Query: 8 VCGNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQ-PRIPE 66
+ GN +G + P G P PQG + + P G+ G P Q +
Sbjct: 32 IAGNPQGPSPQGGNKPQ--GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRS 89
Query: 67 PAARPGRSCALPPPGARRSRGTFQELPRAEVPGLGVASSCQIPCSPGDPE 116
P + PG+ PP G + +G + + P + Q P PG P+
Sbjct: 90 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQ 139
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 33.9 bits (76), Expect = 0.041
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 10 GNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPAA 69
G +G P S A S P PQG ++E + + +GP +GG PQQP+ P PA
Sbjct: 105 GKPQGPPAQGGSKSQSARS--PPGKPQGPPQQEGN-NPQGPPPP-AGGNPQQPQAP-PAG 159
Query: 70 RPGRSCALPPPGARRSR 86
+P + PP G R SR
Sbjct: 160 QP-QGPPRPPQGGRPSR 175
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 33.9 bits (76), Expect = 0.041
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 10 GNVEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPAA 69
G +G P S A S P PQG ++E + + +GP +GG PQQP+ P PA
Sbjct: 125 GKPQGPPAQGGSKSQSARS--PPGKPQGPPQQEGN-NPQGPPPP-AGGNPQQPQAP-PAG 179
Query: 70 RPGRSCALPPPGARRSR 86
+P + PP G R SR
Sbjct: 180 QP-QGPPRPPQGGRPSR 195
>gi|148612857 sickle tail isoform 3 [Homo sapiens]
Length = 1309
Score = 33.5 bits (75), Expect = 0.054
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 26/93 (27%)
Query: 55 SGGGPQQPRIPEPAARPGRSCALPPPG-----------------ARRSRGTFQ----ELP 93
S G PQ R+P P + R L PG A++S G F+ LP
Sbjct: 1105 SSGAPQTSRMPVPMSAKNRPGTLDKPGKQSKLQDPRQYRQANGSAKKSGGDFKPTSPSLP 1164
Query: 94 RAEVPGLGVAS--SCQIPCSPGDPEKHRAIPDP 124
+++P L +S S +P S GD +P+P
Sbjct: 1165 ASKIPALSPSSGKSSSLPSSSGDSSN---LPNP 1194
>gi|148612813 sickle tail isoform 2 [Homo sapiens]
Length = 1264
Score = 33.5 bits (75), Expect = 0.054
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 26/93 (27%)
Query: 55 SGGGPQQPRIPEPAARPGRSCALPPPG-----------------ARRSRGTFQ----ELP 93
S G PQ R+P P + R L PG A++S G F+ LP
Sbjct: 1060 SSGAPQTSRMPVPMSAKNRPGTLDKPGKQSKLQDPRQYRQANGSAKKSGGDFKPTSPSLP 1119
Query: 94 RAEVPGLGVAS--SCQIPCSPGDPEKHRAIPDP 124
+++P L +S S +P S GD +P+P
Sbjct: 1120 ASKIPALSPSSGKSSSLPSSSGDSSN---LPNP 1149
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 33.5 bits (75), Expect = 0.054
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 63 RIPEPAARPGRSCALPPPG---ARRSRGTFQELPRAEVPGLGVASSCQIPCSPGDPEKHR 119
R P PA P + A PP +RR R E A G + P SP D +KHR
Sbjct: 497 RSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHR 556
Query: 120 A 120
+
Sbjct: 557 S 557
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 33.5 bits (75), Expect = 0.054
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 15 EPETPWSLPSLAGSFLPE-RSPQGTLEEELSWSCRGPG--TGRSGGGPQQPRIPEPAARP 71
+ ++PW L +L + E SP + LS + R PG +GG Q + PE AA P
Sbjct: 344 DADSPWLLSNLVSRMISEGSSPIRCPGQCLSPAPRPPGEPVSPAGGAAQDSQDPEAAAGP 403
Query: 72 G--------RSCALPPPGARRSR 86
G CA PPP R
Sbjct: 404 GGVELVDMETLCAPPPPAPAAPR 426
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 33.5 bits (75), Expect = 0.054
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 15 EPETPWSLPSLAGSFLPE-RSPQGTLEEELSWSCRGPG--TGRSGGGPQQPRIPEPAARP 71
+ ++PW L +L + E SP + LS + R PG +GG Q + PE AA P
Sbjct: 317 DADSPWLLSNLVSRMISEGSSPIRCPGQCLSPAPRPPGEPVSPAGGAAQDSQDPEAAAGP 376
Query: 72 G--------RSCALPPPGARRSR 86
G CA PPP R
Sbjct: 377 GGVELVDMETLCAPPPPAPAAPR 399
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 33.1 bits (74), Expect = 0.070
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 12 VEGEPETPWSLPSLAGSFLPERSPQGTLEEELSWSCRGPGTGRSGGGPQQPRIPEPAARP 71
+EGE E P + L + +P + P+G W GP G G P++ R PE P
Sbjct: 254 LEGEGEAPPT--GLTTAVVPSQQPEGAGLRSKIWQL-GPA-GALRGRPRRKRYPEAGRVP 309
Query: 72 GRSCALPPPGARRSRGTFQELPRAE 96
G P GA + + P A+
Sbjct: 310 GARVQEPQRGAGEQKDQSAQGPAAQ 334
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 33.1 bits (74), Expect = 0.070
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 59 PQQPRIPEPAARPGRSCALPPPGARRSRGTFQELPRAEVPGL-------------GVASS 105
P P P P RP LPPPG R R LP P L G +
Sbjct: 32 PPPPPPPPPTPRPPPPPPLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLARGRITQ 91
Query: 106 CQIPCSP 112
CQ+ SP
Sbjct: 92 CQVAASP 98
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,726,672
Number of Sequences: 37866
Number of extensions: 613651
Number of successful extensions: 3274
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 457
Number of HSP's that attempted gapping in prelim test: 2695
Number of HSP's gapped (non-prelim): 1026
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.