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Search of human proteins with 33457326
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33457326 GS homeobox 1 [Homo sapiens]
(264 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33457326 GS homeobox 1 [Homo sapiens] 547 e-156
gi|18959212 GS homeobox 2 [Homo sapiens] 213 1e-55
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 102 3e-22
gi|13273315 homeobox B4 [Homo sapiens] 100 1e-21
gi|10140847 homeobox A2 [Homo sapiens] 99 5e-21
gi|19923391 homeobox D3 [Homo sapiens] 96 2e-20
gi|89257348 homeo box HB9 [Homo sapiens] 96 3e-20
gi|24497515 homeobox A3 isoform b [Homo sapiens] 95 5e-20
gi|24497513 homeobox A3 isoform a [Homo sapiens] 95 5e-20
gi|13562112 homeobox A3 isoform a [Homo sapiens] 95 5e-20
gi|84570137 homeobox B3 [Homo sapiens] 95 5e-20
gi|148613882 homeobox A4 [Homo sapiens] 95 7e-20
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 94 1e-19
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 91 8e-19
gi|4504469 homeobox B5 [Homo sapiens] 89 3e-18
gi|23397672 homeobox D4 [Homo sapiens] 89 4e-18
gi|4504465 homeobox B2 [Homo sapiens] 89 5e-18
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 88 7e-18
gi|24497538 homeobox C4 [Homo sapiens] 87 2e-17
gi|24497540 homeobox C4 [Homo sapiens] 87 2e-17
gi|24497517 homeobox A5 [Homo sapiens] 86 4e-17
gi|11321638 homeobox C5 [Homo sapiens] 86 4e-17
gi|24497556 homeobox A7 [Homo sapiens] 85 7e-17
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 81 8e-16
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 81 8e-16
gi|226437602 NK1 homeobox 2 [Homo sapiens] 80 1e-15
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 80 1e-15
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 80 1e-15
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 80 1e-15
gi|24497526 homeobox B1 [Homo sapiens] 80 1e-15
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 547 bits (1409), Expect = e-156
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPL 60
MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPL
Sbjct: 1 MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPL 60
Query: 61 CVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALY 120
CVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALY
Sbjct: 61 CVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALY 120
Query: 121 QTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEI 180
QTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEI
Sbjct: 121 QTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEI 180
Query: 181 ATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCS 240
ATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCS
Sbjct: 181 ATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCS 240
Query: 241 EDDDELPMSPSSSGKDDRDLTVTP 264
EDDDELPMSPSSSGKDDRDLTVTP
Sbjct: 241 EDDDELPMSPSSSGKDDRDLTVTP 264
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 213 bits (542), Expect = 1e-55
Identities = 142/318 (44%), Positives = 176/318 (55%), Gaps = 73/318 (22%)
Query: 1 MPRSFLVDSLVLREAGEK--KAPEGSPPPLF--PYAVPPPHALHGLSPGACHARKAGLLC 56
M RSF VDSL++++ PE P P F P +PPP + PG C +RK+G C
Sbjct: 1 MSRSFYVDSLIIKDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPG-CPSRKSGAFC 59
Query: 57 VCPLCVTASQLHGPPGPP------------------------ALPLLKASFP--PFGSQY 90
VCPLCVT S LH G ALPLLK+ F P +Q+
Sbjct: 60 VCPLCVT-SHLHSSRGSVGAGSGGAGAGVTGAGGSGVAGAAGALPLLKSQFSSAPGDAQF 118
Query: 91 C----------HAPLGRQH--SAVSPGVAHGPAAAAAAAALYQ--------------TSY 124
C H P H PG A AAAAAAAA T+Y
Sbjct: 119 CPRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTY 178
Query: 125 PLPDPRQFHCISVDSS-SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATY 183
+ DPR+FHC+++ S ++Q+P+ KRMRTAFTSTQLLELEREF+SNMYLSRLRRIEIATY
Sbjct: 179 NVADPRRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATY 238
Query: 184 LNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDD 243
LNLSEKQVKIWFQNRRVKHKKEGKG+ ++ GCKC S + +
Sbjct: 239 LNLSEKQVKIWFQNRRVKHKKEGKGTQR------------NSHAGCKCVG-SQVHYARSE 285
Query: 244 DELPMSPSSSGKDDRDLT 261
DE +SP+S+ DD++++
Sbjct: 286 DEDSLSPASA-NDDKEIS 302
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 102 bits (254), Expect = 3e-22
Identities = 80/237 (33%), Positives = 99/237 (41%), Gaps = 53/237 (22%)
Query: 22 EGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKA 81
+GSPP + PY VPP P H H P ALP
Sbjct: 59 QGSPPDISPYEVPPLAD----DPAVAHLH-----------------HHLPAQLALP---- 93
Query: 82 SFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSS 141
H P G PGV P Q +P + H +
Sbjct: 94 ----------HPPAGPFPEGAEPGVLEEPNRV-------QLPFPWMKSTKAHAWKGQWAG 136
Query: 142 NQLPS----SKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197
+ +KR RTA+T QLLELE+EF N Y+SR RR+E+A LNL+E+ +KIWFQN
Sbjct: 137 GAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQN 196
Query: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSG 254
RR+K KKE + + GGG GGGG A CA S E+ LP P G
Sbjct: 197 RRMKWKKE---EDKKRGGGTAVGGGGVAEPEQDCAVTS----GEELLALPPPPPPGG 246
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 100 bits (249), Expect = 1e-21
Identities = 77/204 (37%), Positives = 95/204 (46%), Gaps = 34/204 (16%)
Query: 23 GSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKAS 82
G PPP P PPP GLSP A P PPA LL
Sbjct: 72 GPPPP--PPPPPPPPPPPGLSPRA-----------------------PAPPPAGALL--- 103
Query: 83 FPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSN 142
P Q C A S P A P + + + + P R+ H +S + +
Sbjct: 104 --PEPGQRCEAV---SSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVH-VSTVNPNY 157
Query: 143 QLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKH 202
KR RTA+T Q+LELE+EF N YL+R RR+EIA L LSE+Q+KIWFQNRR+K
Sbjct: 158 AGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKW 217
Query: 203 KKEGKGSNHRGGGGGGAGGGGSAP 226
KK+ K N + GG AG G P
Sbjct: 218 KKDHKLPNTKIRSGGAAGSAGGPP 241
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 98.6 bits (244), Expect = 5e-21
Identities = 68/215 (31%), Positives = 101/215 (46%), Gaps = 36/215 (16%)
Query: 33 VPPP--HALHGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQY 90
+PPP + L+PG+ AG P G P+ + P +
Sbjct: 48 IPPPFEQTIPSLNPGSHPRHGAG----------GRPKPSPAGSRGSPVPAGALQPPEYPW 97
Query: 91 CHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRM 150
+ +A+ P A AAA A H S++ + S+R+
Sbjct: 98 MKEKKAAKKTALLPAAAAAATAAATGPACLS-----------HKESLEIADGSGGGSRRL 146
Query: 151 RTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSN 210
RTA+T+TQLLELE+EF N YL R RR+EIA L+L+E+QVK+WFQNRR+KHK++ +
Sbjct: 147 RTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKE 206
Query: 211 HRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDE 245
++ G KC SL ++ E+D+E
Sbjct: 207 NQNSEG-------------KCKSLEDSEKVEEDEE 228
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 96.3 bits (238), Expect = 2e-20
Identities = 63/155 (40%), Positives = 87/155 (56%), Gaps = 24/155 (15%)
Query: 65 SQLHGPPGPPALPLLKASFP--PFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQT 122
S+ P PP P L S P P G P G GP A++++A + +
Sbjct: 112 SEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKG------------GPNASSSSATISKQ 159
Query: 123 SYP-LPDPRQFH-----CI----SVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYL 172
+P + + RQ C S + S P+SKR+RTA+TS QL+ELE+EF N YL
Sbjct: 160 IFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYL 219
Query: 173 SRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 207
R RR+E+A LNL+E+Q+KIWFQNRR+K+KK+ K
Sbjct: 220 CRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 254
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 95.9 bits (237), Expect = 3e-20
Identities = 85/225 (37%), Positives = 104/225 (46%), Gaps = 36/225 (16%)
Query: 36 PHALHGLSPGACHARKAGLLCVCPLCVTASQLH--GPPGPPALPLLKASF--PPFG--SQ 89
PH H PGA A A + A LH G G LP A + P +G +
Sbjct: 113 PH--HHAHPGAAAAAAAAAAAAAAGGL-ALGLHPGGAQGGAGLPAQAALYGHPVYGYSAA 169
Query: 90 YCHAPLGRQHSAVS---PGV-----AHGPAAAAAAAALYQ---------TSYPLPDPRQF 132
A L QH A+S P V AH A +Q LP F
Sbjct: 170 AAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMILPKMPDF 229
Query: 133 HCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVK 192
+ + SN L +R RTAFTS QLLELE +F N YLSR +R E+AT L L+E QVK
Sbjct: 230 NS---QAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVK 286
Query: 193 IWFQNRRVKHKKEGKG-------SNHRGGGGGGAGGGGSAPQGCK 230
IWFQNRR+K K+ K + + GGGGGAG GG+ G +
Sbjct: 287 IWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAE 331
Score = 28.5 bits (62), Expect = 6.3
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 213 GGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDEL 246
G GGGG GGG S C+ SS + D L
Sbjct: 40 GTGGGGGGGGASGGTSGSCSPASSEPPAAPADRL 73
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 95.1 bits (235), Expect = 5e-20
Identities = 48/91 (52%), Positives = 60/91 (65%)
Query: 138 DSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197
D S SSKR RTA+TS QL+ELE+EF N YL R RR+E+A LNL+E+Q+KIWFQN
Sbjct: 24 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 83
Query: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQG 228
RR+K+KK+ KG GG + P G
Sbjct: 84 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 114
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 95.1 bits (235), Expect = 5e-20
Identities = 48/91 (52%), Positives = 60/91 (65%)
Query: 138 DSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197
D S SSKR RTA+TS QL+ELE+EF N YL R RR+E+A LNL+E+Q+KIWFQN
Sbjct: 182 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 241
Query: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQG 228
RR+K+KK+ KG GG + P G
Sbjct: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 95.1 bits (235), Expect = 5e-20
Identities = 48/91 (52%), Positives = 60/91 (65%)
Query: 138 DSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197
D S SSKR RTA+TS QL+ELE+EF N YL R RR+E+A LNL+E+Q+KIWFQN
Sbjct: 182 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 241
Query: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQG 228
RR+K+KK+ KG GG + P G
Sbjct: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPG 272
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 95.1 bits (235), Expect = 5e-20
Identities = 57/128 (44%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 138 DSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQN 197
D S +SKR RTA+TS QL+ELE+EF N YL R RR+E+A LNLSE+Q+KIWFQN
Sbjct: 179 DKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQN 238
Query: 198 RRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCK-CASLSSAKCSEDDDELPMSPSSSGKD 256
RR+K+KK+ K GG GS PQ + A +A S SP + GK
Sbjct: 239 RRMKYKKDQKAKG-LASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKA 297
Query: 257 DRDLTVTP 264
++ P
Sbjct: 298 HQNAYALP 305
Score = 34.3 bits (77), Expect = 0.11
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 206 GKGSNHRGGGGGGAGGGGSAPQG 228
G GS GGGGGG GGG +P G
Sbjct: 162 GGGSGGSGGGGGGGGGGDKSPPG 184
Score = 32.3 bits (72), Expect = 0.44
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 189 KQVKIWF----QNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQG 228
KQ+ W Q ++K+ G GGGGGG GGG G
Sbjct: 127 KQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGG 170
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 94.7 bits (234), Expect = 7e-20
Identities = 70/173 (40%), Positives = 88/173 (50%), Gaps = 20/173 (11%)
Query: 64 ASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTS 123
AS + P PP PL + PP + C A + +PGV G +A A L S
Sbjct: 132 ASHVLQPQLPP--PLQPRAVPPAAPRRCEA------APATPGVPAGGSAPACPLLLADKS 183
Query: 124 YPL----------PDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLS 173
PL P ++ H +V+ S N KR RTA+T Q+LELE+EF N YL+
Sbjct: 184 -PLGLKGKEPVVYPWMKKIHVSAVNPSYNG-GEPKRSRTAYTRQQVLELEKEFHFNRYLT 241
Query: 174 RLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAP 226
R RRIEIA L LSE+QVKIWFQNRR+K KK+ K N + A P
Sbjct: 242 RRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPP 294
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 94.0 bits (232), Expect = 1e-19
Identities = 67/165 (40%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 71 PGPPALPLLKASFPPFGSQYCHAPLG-RQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDP 129
P P+ L+ + PP P G R++S V+PG G AA A Q + P
Sbjct: 24 PAQPSWARLRPTRPPEPPSTRQRPPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKP 83
Query: 130 RQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEK 189
++ S DS S + +R RTAFT QL+ LE +F + YLS R+ +A L+L+E
Sbjct: 84 KRKRTGS-DSKSGK---PRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTET 139
Query: 190 QVKIWFQNRRVKHKKEGKG---SNHRGGGGG---GAGGGGSAPQG 228
QVKIWFQNRR K KK+ G S GGGGG GAG G P G
Sbjct: 140 QVKIWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAGPGTGLPGG 184
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 91.3 bits (225), Expect = 8e-19
Identities = 62/142 (43%), Positives = 78/142 (54%), Gaps = 10/142 (7%)
Query: 93 APLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRMRT 152
AP R++S V+PG G AA A Q + P++ S DS S + +R RT
Sbjct: 612 APGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGS-DSKSGK---PRRART 667
Query: 153 AFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKG---S 209
AFT QL+ LE +F + YLS R+ +A L+L+E QVKIWFQNRR K KK+ G S
Sbjct: 668 AFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTS 727
Query: 210 NHRGGGGG---GAGGGGSAPQG 228
GGGGG GAG G P G
Sbjct: 728 APTGGGGGPGPGAGPGTGLPGG 749
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 89.4 bits (220), Expect = 3e-18
Identities = 56/108 (51%), Positives = 67/108 (62%), Gaps = 7/108 (6%)
Query: 103 SPGVAHG---PAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQL 159
SP +A P A + AA QT P R+ H IS D + P KR RTA+T Q
Sbjct: 151 SPSLARAQPEPMATSTAAPEGQTPQIFPWMRKLH-ISHDMTG---PDGKRARTAYTRYQT 206
Query: 160 LELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 207
LELE+EF N YL+R RRIEIA L LSE+Q+KIWFQNRR+K KK+ K
Sbjct: 207 LELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK 254
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 89.0 bits (219), Expect = 4e-18
Identities = 66/174 (37%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 40 HGLSPGACHARKAGLLCVCPLCVTASQLHGPPGPPALPLLKASFPPFGSQYCHAPLGRQH 99
HG PG A CP PP PP PL P R +
Sbjct: 78 HGQEPGGPGGHYAAPGEPCP---------APPAPPPAPL---------------PGARAY 113
Query: 100 SAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRMRTAFTSTQL 159
S P + AL Q + P ++ H SV+ + KR RTA+T Q+
Sbjct: 114 SQSDP------KQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTG-GEPKRSRTAYTRQQV 166
Query: 160 LELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRG 213
LELE+EF N YL+R RRIEIA L LSE+Q+KIWFQNRR+K KK+ K N +G
Sbjct: 167 LELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKG 220
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 88.6 bits (218), Expect = 5e-18
Identities = 64/186 (34%), Positives = 91/186 (48%), Gaps = 29/186 (15%)
Query: 70 PPGPPALPLLKAS--FPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLP 127
PP PP LP + FP + + ++ SP + PA+ + A LP
Sbjct: 80 PPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPA---DGLGLP 136
Query: 128 DPRQFHCISVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLS 187
+ ++R+RTA+T+TQLLELE+EF N YL R RR+EIA L+L+
Sbjct: 137 EAGG-------------GGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLT 183
Query: 188 EKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELP 247
E+QVK+WFQNRR+KHK++ + HR G G+ C A E+ P
Sbjct: 184 ERQVKVWFQNRRMKHKRQ---TQHREPPDGEPACPGALEDICDPA--------EEPAASP 232
Query: 248 MSPSSS 253
PS+S
Sbjct: 233 GGPSAS 238
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 88.2 bits (217), Expect = 7e-18
Identities = 61/142 (42%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Query: 93 APLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRMRT 152
AP R++S V+ G G AA A Q + P++ S DS S + +R RT
Sbjct: 209 APGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGS-DSKSGK---PRRART 264
Query: 153 AFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKG---S 209
AFT QL+ LE +F + YLS R+ +A L+L+E QVKIWFQNRR K KK+ G S
Sbjct: 265 AFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADTS 324
Query: 210 NHRGGGGG---GAGGGGSAPQG 228
GGGGG GAG G P G
Sbjct: 325 APTGGGGGPGPGAGPGTGLPGG 346
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 86.7 bits (213), Expect = 2e-17
Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 93 APLGRQHSAVSPG--VAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRM 150
APL ++ SP PA ++A + P ++ H +V+ + N KR
Sbjct: 101 APLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNG-GEPKRS 159
Query: 151 RTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSN 210
RTA+T Q+LELE+EF N YL+R RRIEIA L LSE+Q+KIWFQNRR+K KK+ + N
Sbjct: 160 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
Query: 211 HRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDD 257
+ AG S S ++ SED + P +D
Sbjct: 220 TKVRSAPPAGAAPST------LSAATPGTSEDHSQSATPPEQQRAED 260
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 86.7 bits (213), Expect = 2e-17
Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 93 APLGRQHSAVSPG--VAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSSSNQLPSSKRM 150
APL ++ SP PA ++A + P ++ H +V+ + N KR
Sbjct: 101 APLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNG-GEPKRS 159
Query: 151 RTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSN 210
RTA+T Q+LELE+EF N YL+R RRIEIA L LSE+Q+KIWFQNRR+K KK+ + N
Sbjct: 160 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
Query: 211 HRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDD 257
+ AG S S ++ SED + P +D
Sbjct: 220 TKVRSAPPAGAAPST------LSAATPGTSEDHSQSATPPEQQRAED 260
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 85.5 bits (210), Expect = 4e-17
Identities = 57/120 (47%), Positives = 70/120 (58%), Gaps = 16/120 (13%)
Query: 110 PAAAAAAAALYQTSYPLPDP----------RQFHCISVDSSSNQLPSSKRMRTAFTSTQL 159
PA++ A+A S P P P R+ H IS D+ P KR RTA+T Q
Sbjct: 154 PASSEQASA---QSEPSPAPPAQPQIYPWMRKLH-ISHDNIGG--PEGKRARTAYTRYQT 207
Query: 160 LELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSNHRGGGGGGA 219
LELE+EF N YL+R RRIEIA L LSE+Q+KIWFQNRR+K KK+ K + GGA
Sbjct: 208 LELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGA 267
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 85.5 bits (210), Expect = 4e-17
Identities = 67/187 (35%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 25 PPPLFPYAVPPPHALHGLSPGA---CHARKAGLLCVCPLC-VTASQLHGPPGPPALPLLK 80
PPP P ++LHG+ A H + P C A+ H P A PL
Sbjct: 50 PPPA------PSNSLHGVDMAANPRAHPDR-------PACSAAAAPGHAPGRDEAAPLN- 95
Query: 81 ASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSS 140
P SQ P + + S + A A L Q P P Q +
Sbjct: 96 ---PGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQP----PAPPQIYPWMTKLH 148
Query: 141 SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRV 200
+ KR RT++T Q LELE+EF N YL+R RRIEIA L L+E+Q+KIWFQNRR+
Sbjct: 149 MSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRM 208
Query: 201 KHKKEGK 207
K KK+ K
Sbjct: 209 KWKKDSK 215
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 84.7 bits (208), Expect = 7e-17
Identities = 48/101 (47%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
Query: 145 PSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 204
P KR R +T Q LELE+EF N YL+R RRIEIA L L+E+Q+KIWFQNRR+K KK
Sbjct: 128 PDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 187
Query: 205 EGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDE 245
E K G A G+ P A+ A +DD+E
Sbjct: 188 EHKDE----GPTAAAAPEGAVPSAAATAAADKADEEDDDEE 224
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 81.3 bits (199), Expect = 8e-16
Identities = 41/72 (56%), Positives = 52/72 (72%)
Query: 148 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 207
+R R ++ Q LELE+EF N YL+R RRIEIA L L+E+Q+KIWFQNRR+K KKE
Sbjct: 60 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN 119
Query: 208 GSNHRGGGGGGA 219
++ GGGGGA
Sbjct: 120 LTSTLSGGGGGA 131
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 81.3 bits (199), Expect = 8e-16
Identities = 41/72 (56%), Positives = 52/72 (72%)
Query: 148 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 207
+R R ++ Q LELE+EF N YL+R RRIEIA L L+E+Q+KIWFQNRR+K KKE
Sbjct: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESN 201
Query: 208 GSNHRGGGGGGA 219
++ GGGGGA
Sbjct: 202 LTSTLSGGGGGA 213
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 80.5 bits (197), Expect = 1e-15
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 148 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 207
+R RTAFT QL+ LE +F + YLS R+ +A L+L+E QVKIWFQNRR K KK+
Sbjct: 164 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 223
Query: 208 GSN-------------HRGGGGGGAGGGGSAPQG 228
G++ GGGGGG GG P G
Sbjct: 224 GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPG 257
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 80.5 bits (197), Expect = 1e-15
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 148 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 207
+R RTAFT QL+ LE +F + YLS R+ +A L+L+E QVKIWFQNRR K KK+
Sbjct: 186 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 245
Query: 208 GSN-------------HRGGGGGGAGGGGSAPQG 228
G++ GGGGGG GG P G
Sbjct: 246 GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPG 279
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 80.5 bits (197), Expect = 1e-15
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 148 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 207
+R RTAFT QL+ LE +F + YLS R+ +A L+L+E QVKIWFQNRR K KK+
Sbjct: 186 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 245
Query: 208 GSN-------------HRGGGGGGAGGGGSAPQG 228
G++ GGGGGG GG P G
Sbjct: 246 GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPG 279
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 80.5 bits (197), Expect = 1e-15
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 13/94 (13%)
Query: 148 KRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGK 207
+R RTAFT QL+ LE +F + YLS R+ +A L+L+E QVKIWFQNRR K KK+
Sbjct: 186 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 245
Query: 208 GSN-------------HRGGGGGGAGGGGSAPQG 228
G++ GGGGGG GG P G
Sbjct: 246 GADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPG 279
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 80.5 bits (197), Expect = 1e-15
Identities = 63/173 (36%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 92 HAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYP----LPDPRQFHCISVDS-------- 139
H P G + +A + PA A + +T P P R F + V
Sbjct: 141 HPPYGNEQTA-----SFAPAYADLLSEDKETPCPSEPNTPTARTFDWMKVKRNPPKTAKV 195
Query: 140 SSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRR 199
S L S +RT FT+ QL ELE+EF N YLSR RR+EIA L L+E QVKIWFQNRR
Sbjct: 196 SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRR 255
Query: 200 VKHKKEGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSS 252
+K KK + G AP GC + A SPSS
Sbjct: 256 MKQKKREREE----------GRVPPAPPGCPKEAAGDASDQSTCTSPEASPSS 298
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,976,181
Number of Sequences: 37866
Number of extensions: 851063
Number of successful extensions: 13527
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 8245
Number of HSP's gapped (non-prelim): 4056
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.