Search of human proteins with 12232431

Search of human proteins with 12232431

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|12232431 hypothetical protein LOC64776 [Homo sapiens]
         (150 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12232431 hypothetical protein LOC64776 [Homo sapiens]              340   3e-94
gi|4505525 origin recognition complex subunit 5 isoform 1 [Homo ...    28   3.8  
gi|22748655 hypothetical protein LOC93190 [Homo sapiens]               27   5.0  
gi|46243671 G protein-coupled receptor 152 [Homo sapiens]              27   6.5  

>gi|12232431 hypothetical protein LOC64776 [Homo sapiens]
          Length = 150

 Score =  340 bits (872), Expect = 3e-94
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MAASQCLCCSKFLFQRQNLACFLTNPHCGSLVNADGHGEVWTDWNNMSKFFQYGWRCTTN 60
           MAASQCLCCSKFLFQRQNLACFLTNPHCGSLVNADGHGEVWTDWNNMSKFFQYGWRCTTN
Sbjct: 1   MAASQCLCCSKFLFQRQNLACFLTNPHCGSLVNADGHGEVWTDWNNMSKFFQYGWRCTTN 60

Query: 61  ENTYSNRTLMGNWNQERYDLRNIVQPKPLPSQFGHYFETTYDTSYNNKMPLSTHRFKREP 120
           ENTYSNRTLMGNWNQERYDLRNIVQPKPLPSQFGHYFETTYDTSYNNKMPLSTHRFKREP
Sbjct: 61  ENTYSNRTLMGNWNQERYDLRNIVQPKPLPSQFGHYFETTYDTSYNNKMPLSTHRFKREP 120

Query: 121 HWFPGHQPELDPPRYKCTEKSTYMNSYSKP 150
           HWFPGHQPELDPPRYKCTEKSTYMNSYSKP
Sbjct: 121 HWFPGHQPELDPPRYKCTEKSTYMNSYSKP 150


>gi|4505525 origin recognition complex subunit 5 isoform 1 [Homo
           sapiens]
          Length = 435

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 125 GHQPELDPPRYKCTEKSTYMNSYSK 149
           GH  +LD P+YKCT    ++ + ++
Sbjct: 397 GHDDQLDGPKYKCTVSLDFIRAIAR 421


>gi|22748655 hypothetical protein LOC93190 [Homo sapiens]
          Length = 194

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 21/98 (21%)

Query: 61  ENTYSNRTLMGNWNQERYDLRNIVQPKPLPSQFGHYFETTYDTSYNNKMPLSTHRFKREP 120
           E  YS + L GNW +ER          P         ++ Y   Y   +P   HR  +  
Sbjct: 19  ETKYSTKVLTGNWMEERRKFTRDTDKTP---------QSIYRKEY---IPFPDHRPDQIS 66

Query: 121 HWFPGHQPELDPPRYKCTEK---------STYMNSYSK 149
            W+   + E  P ++  T           STY + Y++
Sbjct: 67  RWYGKRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNR 104


>gi|46243671 G protein-coupled receptor 152 [Homo sapiens]
          Length = 470

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 7/9 (77%), Positives = 9/9 (100%)

Query: 120 PHWFPGHQP 128
           PHW+PGH+P
Sbjct: 136 PHWYPGHRP 144


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,056,549
Number of Sequences: 37866
Number of extensions: 324952
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 4
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.