Search of human proteins with 24119166

Search of human proteins with 24119166

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24119166 retinoblastoma binding protein 9 [Homo sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24119166 retinoblastoma binding protein 9 [Homo sapiens]           394   e-110
gi|222537752 Src homology 2 domain containing transforming prote...    31   0.70 
gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]             29   2.0  
gi|8923001 abhydrolase domain containing 10 [Homo sapiens]             29   2.0  
gi|111074524 Src homology 2 domain containing F [Homo sapiens]         29   2.7  
gi|58219064 Src homology 2 domain containing E [Homo sapiens]          28   3.5  
gi|239752549 PREDICTED: hypothetical protein [Homo sapiens]            28   4.6  
gi|115527120 nebulin [Homo sapiens]                                    28   5.9  
gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens]      27   7.8  
gi|162809334 pregnancy-zone protein [Homo sapiens]                     27   7.8  
gi|67763814 death-inducing-protein [Homo sapiens]                      27   7.8  

>gi|24119166 retinoblastoma binding protein 9 [Homo sapiens]
          Length = 186

 Score =  394 bits (1012), Expect = e-110
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFME 60
           MASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFME
Sbjct: 1   MASPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFME 60

Query: 61  TELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQW 120
           TELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQW
Sbjct: 61  TELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQW 120

Query: 121 EKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVKS 180
           EKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVKS
Sbjct: 121 EKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVKS 180

Query: 181 LLKVPA 186
           LLKVPA
Sbjct: 181 LLKVPA 186


>gi|222537752 Src homology 2 domain containing transforming protein
           D [Homo sapiens]
          Length = 340

 Score = 30.8 bits (68), Expect = 0.70
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 101 SDLGDENERASGYFTRPWQWEKIKANCPYIVQFGSTD 137
           S +  E+ER +  + +PW+W+K   +  + VQF S +
Sbjct: 168 SRMPQEDERPADEYDQPWEWKKDHISRAFAVQFDSPE 204


>gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]
          Length = 2156

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 13   NGGGDVTTHGWY--GWVKKELEKIPGFQCLAKNMPDPITARESIWLPFMETELHCDEK 68
            N  G++T    Y  G+VK+ +EK+ G   + K    P + R+S   P+   E  C  K
Sbjct: 1612 NDSGELTQEKEYNIGFVKRAIEKLYGKADIIKPSFFPGSTRKSQVCPYNSVEFQCSRK 1669


>gi|8923001 abhydrolase domain containing 10 [Homo sapiens]
          Length = 306

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 123 IKANCPYIVQFGSTDDPFLPWKEQQEVADR-----LETKLHKFTDCGHFQNTEFHELITV 177
           I  NCP  +  G  DD  +PW    +VADR     ++  L K +D    +  +   L+  
Sbjct: 235 IPVNCPIRLLHGMKDD-IVPWHTSMQVADRVLSTDVDVILRKHSDHRMREKADIQLLVYT 293

Query: 178 VKSLL 182
           +  L+
Sbjct: 294 IDDLI 298


>gi|111074524 Src homology 2 domain containing F [Homo sapiens]
          Length = 423

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 101 SDLGDENERASGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPW 143
           S L +++ER    + +PW+W+K + +  + V      D  LPW
Sbjct: 188 SRLPEDDERPPEEYDQPWEWKKERISKAFAVDIKVIKD--LPW 228


>gi|58219064 Src homology 2 domain containing E [Homo sapiens]
          Length = 495

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 101 SDLGDENERASGYFTRPWQWEKIKANCPYIVQFGSTDDP 139
           S L + +ER +  + +PW+W+K +      VQF   + P
Sbjct: 312 SRLPENDERPAAEYEQPWEWKKEQIVRALSVQFEGAERP 350


>gi|239752549 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 137 DDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVKSLLKVP 185
           D P    +EQ+++ D+ E K+ + +D       E HE+     S L +P
Sbjct: 244 DPPVSRVREQRQLTDQAERKVVRRSDVDVAAEVEVHEVTQTYNSALSLP 292


>gi|115527120 nebulin [Homo sapiens]
          Length = 6669

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 16   GDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITAR--ESIWLPFMETE 62
            GD+T+   Y   K++L+ + GF C   + PD + +R    +W  ++ T+
Sbjct: 5083 GDITSDIKY---KEDLQVLKGFGCFLYDTPDMVRSRHLRKLWSNYLYTD 5128


>gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens]
          Length = 187

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 17  DVTTHGWYGWVKKELEKIPGFQCLAKNMPDPITARESIWLPFMET-ELHCDEKTI 70
           ++  H   G V ++ E++   Q L  N PDP       W    E+ +L  DE  +
Sbjct: 95  ELVKHEENGLVFEDSEELAALQMLFSNFPDPAGKLNQFWKDLRESQQLRWDESWV 149


>gi|162809334 pregnancy-zone protein [Homo sapiens]
          Length = 1482

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 9/47 (19%)

Query: 107 NERASG--------YFTRPWQWEKIKANCPYIVQFGST-DDPFLPWK 144
           NE++SG        YF   W WE +  N   + + G T  D    WK
Sbjct: 726 NEQSSGPVPETVRSYFPETWIWELVAVNSSGVAEVGVTVPDTITEWK 772


>gi|67763814 death-inducing-protein [Homo sapiens]
          Length = 578

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 15/74 (20%)

Query: 122 KIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETK------------LHKFTDCGHFQNT 169
           + K + PYI+      DP L  +    V+ RL+T             L K  D G F +T
Sbjct: 383 RAKYDTPYIIWRSLPTDPQLKERSSAAVSRRLQTTSSRSYVPSAPAGLGKEEDAGRFHST 442

Query: 170 E---FHELITVVKS 180
           +   FHE+  + ++
Sbjct: 443 KKGNFHEIFNLTEN 456


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,606,078
Number of Sequences: 37866
Number of extensions: 320307
Number of successful extensions: 665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 11
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.