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Search of human proteins with 239757757
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757757 PREDICTED: similar to PRO2325 [Homo sapiens]
(171 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757757 PREDICTED: similar to PRO2325 [Homo sapiens] 351 2e-97
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.004
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 35 0.024
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 35 0.024
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 35 0.024
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 35 0.024
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 34 0.070
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 34 0.070
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 34 0.070
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 34 0.070
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 34 0.070
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.20
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.20
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 32 0.20
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 32 0.35
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 32 0.35
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 32 0.35
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 32 0.35
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 31 0.46
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 31 0.46
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 31 0.46
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 31 0.46
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 31 0.46
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 31 0.46
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 31 0.46
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 31 0.46
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 31 0.46
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 31 0.46
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 31 0.46
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 31 0.46
>gi|239757757 PREDICTED: similar to PRO2325 [Homo sapiens]
Length = 171
Score = 351 bits (901), Expect = 2e-97
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MAWASGFLCSLAGRFSRSPGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAP 60
MAWASGFLCSLAGRFSRSPGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAP
Sbjct: 1 MAWASGFLCSLAGRFSRSPGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAP 60
Query: 61 PGLGDHLSQDADAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEE 120
PGLGDHLSQDADAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEE
Sbjct: 61 PGLGDHLSQDADAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEE 120
Query: 121 GPGLQNPVLLGGAQLSGKRLGPSSRHWAARSFRNLRSRPEIKCQGSVTSDG 171
GPGLQNPVLLGGAQLSGKRLGPSSRHWAARSFRNLRSRPEIKCQGSVTSDG
Sbjct: 121 GPGLQNPVLLGGAQLSGKRLGPSSRHWAARSFRNLRSRPEIKCQGSVTSDG 171
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 38.1 bits (87), Expect = 0.004
Identities = 48/168 (28%), Positives = 60/168 (35%), Gaps = 22/168 (13%)
Query: 5 SGFLCSLAGRFSRSPGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPV---GKAPP 61
SG AG +P G A G A P P G G RP R+P+ G APP
Sbjct: 64 SGSPAGAAGAGPAAPAEG-APGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPP 122
Query: 62 GLGDHLSQDADAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLL------- 114
+ AG VPA + A GP+ P P + A L
Sbjct: 123 AAKLRPPPEGSAG--------SCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGP 174
Query: 115 --DLGAEEGPGLQNPVLLGGAQ-LSGKRLGPSSRHWAARSFRNLRSRP 159
G GPG P G AQ L+G +S H AA + + + P
Sbjct: 175 GPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGP 222
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 35.4 bits (80), Expect = 0.024
Identities = 35/123 (28%), Positives = 43/123 (34%), Gaps = 12/123 (9%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVG-------KAPPGLGDHLSQDA 71
PG GV G P PP G + V P G + PPG+ L +
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 72 DAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLG 131
D G D + G+ G G GP D P G L +G PGL L
Sbjct: 684 DPGLP--GPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGE---PGLPGKPGLP 738
Query: 132 GAQ 134
GA+
Sbjct: 739 GAK 741
Score = 31.2 bits (69), Expect = 0.46
Identities = 38/113 (33%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 26 GVAGGPK-PPLHVGQGSLGEIRPDVAQQRQPVGKAPPG-LGDH-LSQDADAGGDHLSLDA 82
G AG P P +H QG GE P ++ +P PPG GD L D G+
Sbjct: 1036 GRAGRPGLPGIHGLQGDKGE--PGYSEGTRP---GPPGPTGDPGLPGDMGKKGEMGQPGP 1090
Query: 83 DAGVVPAGRSGAEGPDADPVLPVEVG---DLAVLLDLGAEEGPGLQNPVLLGG 132
+ PAG GA G P LP + G DL G PG++ P L G
Sbjct: 1091 PGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPG 1143
Score = 30.0 bits (66), Expect = 1.0
Identities = 30/117 (25%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 25 VGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPG--------------LGDHLSQD 70
+G+ G P P G L R D Q P + PPG L Q
Sbjct: 770 IGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 71 ADAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
G D G+ RSG G P +P G++ L G PG+ P
Sbjct: 830 GRRG--KTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGP 884
Score = 29.6 bits (65), Expect = 1.3
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 26 GVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADAGGDHLSLDADA 84
G+ G P PP G G I P R P G + PG G + + D
Sbjct: 1219 GIEGFPGPP-----GLPGAIIPGQTGNRGPPGSRGSPGAP---GPPGPPGSHVIGIKGDK 1270
Query: 85 GVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
G + G G +GP P GD+ LGA PGL P
Sbjct: 1271 GSM--GHPGPKGP------PGTAGDMGPPGRLGAPGTPGLPGP 1305
Score = 28.9 bits (63), Expect = 2.3
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 19 PGCGQAVGVAGGP-KPPLHVGQGSLGEI-RPDVAQQRQPVG----KAPPGLGDHLSQDAD 72
PG +G G P +P L GS+G + P +R +G PGL D
Sbjct: 993 PGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGD 1052
Query: 73 AGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G + G R G GP DP LP GD+ ++G PG P G
Sbjct: 1053 KG--------EPGYSEGTRPGPPGPTGDPGLP---GDMGKKGEMGQPGPPGHLGPAGPEG 1101
Query: 133 A 133
A
Sbjct: 1102 A 1102
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 35.4 bits (80), Expect = 0.024
Identities = 35/123 (28%), Positives = 43/123 (34%), Gaps = 12/123 (9%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVG-------KAPPGLGDHLSQDA 71
PG GV G P PP G + V P G + PPG+ L +
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 72 DAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLG 131
D G D + G+ G G GP D P G L +G PGL L
Sbjct: 684 DPGLP--GPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGE---PGLPGKPGLP 738
Query: 132 GAQ 134
GA+
Sbjct: 739 GAK 741
Score = 31.2 bits (69), Expect = 0.46
Identities = 38/113 (33%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 26 GVAGGPK-PPLHVGQGSLGEIRPDVAQQRQPVGKAPPG-LGDH-LSQDADAGGDHLSLDA 82
G AG P P +H QG GE P ++ +P PPG GD L D G+
Sbjct: 1036 GRAGRPGLPGIHGLQGDKGE--PGYSEGTRP---GPPGPTGDPGLPGDMGKKGEMGQPGP 1090
Query: 83 DAGVVPAGRSGAEGPDADPVLPVEVG---DLAVLLDLGAEEGPGLQNPVLLGG 132
+ PAG GA G P LP + G DL G PG++ P L G
Sbjct: 1091 PGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPG 1143
Score = 30.0 bits (66), Expect = 1.0
Identities = 30/117 (25%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 25 VGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPG--------------LGDHLSQD 70
+G+ G P P G L R D Q P + PPG L Q
Sbjct: 770 IGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 71 ADAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
G D G+ RSG G P +P G++ L G PG+ P
Sbjct: 830 GRRG--KTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGP 884
Score = 29.6 bits (65), Expect = 1.3
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 26 GVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADAGGDHLSLDADA 84
G+ G P PP G G I P R P G + PG G + + D
Sbjct: 1219 GIEGFPGPP-----GLPGAIIPGQTGNRGPPGSRGSPGAP---GPPGPPGSHVIGIKGDK 1270
Query: 85 GVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
G + G G +GP P GD+ LGA PGL P
Sbjct: 1271 GSM--GHPGPKGP------PGTAGDMGPPGRLGAPGTPGLPGP 1305
Score = 28.9 bits (63), Expect = 2.3
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 19 PGCGQAVGVAGGP-KPPLHVGQGSLGEI-RPDVAQQRQPVG----KAPPGLGDHLSQDAD 72
PG +G G P +P L GS+G + P +R +G PGL D
Sbjct: 993 PGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGD 1052
Query: 73 AGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G + G R G GP DP LP GD+ ++G PG P G
Sbjct: 1053 KG--------EPGYSEGTRPGPPGPTGDPGLP---GDMGKKGEMGQPGPPGHLGPAGPEG 1101
Query: 133 A 133
A
Sbjct: 1102 A 1102
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 35.4 bits (80), Expect = 0.024
Identities = 35/123 (28%), Positives = 43/123 (34%), Gaps = 12/123 (9%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVG-------KAPPGLGDHLSQDA 71
PG GV G P PP G + V P G + PPG+ L +
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 72 DAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLG 131
D G D + G+ G G GP D P G L +G PGL L
Sbjct: 684 DPGLP--GPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGE---PGLPGKPGLP 738
Query: 132 GAQ 134
GA+
Sbjct: 739 GAK 741
Score = 31.2 bits (69), Expect = 0.46
Identities = 38/113 (33%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 26 GVAGGPK-PPLHVGQGSLGEIRPDVAQQRQPVGKAPPG-LGDH-LSQDADAGGDHLSLDA 82
G AG P P +H QG GE P ++ +P PPG GD L D G+
Sbjct: 1036 GRAGRPGLPGIHGLQGDKGE--PGYSEGTRP---GPPGPTGDPGLPGDMGKKGEMGQPGP 1090
Query: 83 DAGVVPAGRSGAEGPDADPVLPVEVG---DLAVLLDLGAEEGPGLQNPVLLGG 132
+ PAG GA G P LP + G DL G PG++ P L G
Sbjct: 1091 PGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPG 1143
Score = 30.0 bits (66), Expect = 1.0
Identities = 30/117 (25%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 25 VGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPG--------------LGDHLSQD 70
+G+ G P P G L R D Q P + PPG L Q
Sbjct: 770 IGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 71 ADAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
G D G+ RSG G P +P G++ L G PG+ P
Sbjct: 830 GRRG--KTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGP 884
Score = 29.6 bits (65), Expect = 1.3
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 26 GVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADAGGDHLSLDADA 84
G+ G P PP G G I P R P G + PG G + + D
Sbjct: 1219 GIEGFPGPP-----GLPGAIIPGQTGNRGPPGSRGSPGAP---GPPGPPGSHVIGIKGDK 1270
Query: 85 GVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
G + G G +GP P GD+ LGA PGL P
Sbjct: 1271 GSM--GHPGPKGP------PGTAGDMGPPGRLGAPGTPGLPGP 1305
Score = 28.9 bits (63), Expect = 2.3
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 19 PGCGQAVGVAGGP-KPPLHVGQGSLGEI-RPDVAQQRQPVG----KAPPGLGDHLSQDAD 72
PG +G G P +P L GS+G + P +R +G PGL D
Sbjct: 993 PGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGD 1052
Query: 73 AGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G + G R G GP DP LP GD+ ++G PG P G
Sbjct: 1053 KG--------EPGYSEGTRPGPPGPTGDPGLP---GDMGKKGEMGQPGPPGHLGPAGPEG 1101
Query: 133 A 133
A
Sbjct: 1102 A 1102
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 35.4 bits (80), Expect = 0.024
Identities = 35/123 (28%), Positives = 43/123 (34%), Gaps = 12/123 (9%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVG-------KAPPGLGDHLSQDA 71
PG GV G P PP G + V P G + PPG+ L +
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 72 DAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLG 131
D G D + G+ G G GP D P G L +G PGL L
Sbjct: 684 DPGLP--GPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGE---PGLPGKPGLP 738
Query: 132 GAQ 134
GA+
Sbjct: 739 GAK 741
Score = 31.2 bits (69), Expect = 0.46
Identities = 38/113 (33%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 26 GVAGGPK-PPLHVGQGSLGEIRPDVAQQRQPVGKAPPG-LGDH-LSQDADAGGDHLSLDA 82
G AG P P +H QG GE P ++ +P PPG GD L D G+
Sbjct: 1036 GRAGRPGLPGIHGLQGDKGE--PGYSEGTRP---GPPGPTGDPGLPGDMGKKGEMGQPGP 1090
Query: 83 DAGVVPAGRSGAEGPDADPVLPVEVG---DLAVLLDLGAEEGPGLQNPVLLGG 132
+ PAG GA G P LP + G DL G PG++ P L G
Sbjct: 1091 PGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPG 1143
Score = 30.0 bits (66), Expect = 1.0
Identities = 30/117 (25%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 25 VGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPG--------------LGDHLSQD 70
+G+ G P P G L R D Q P + PPG L Q
Sbjct: 770 IGLPGLPGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 71 ADAGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
G D G+ RSG G P +P G++ L G PG+ P
Sbjct: 830 GRRG--KTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGP 884
Score = 29.6 bits (65), Expect = 1.3
Identities = 31/103 (30%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 26 GVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADAGGDHLSLDADA 84
G+ G P PP G G I P R P G + PG G + + D
Sbjct: 1219 GIEGFPGPP-----GLPGAIIPGQTGNRGPPGSRGSPGAP---GPPGPPGSHVIGIKGDK 1270
Query: 85 GVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
G + G G +GP P GD+ LGA PGL P
Sbjct: 1271 GSM--GHPGPKGP------PGTAGDMGPPGRLGAPGTPGLPGP 1305
Score = 28.9 bits (63), Expect = 2.3
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 19 PGCGQAVGVAGGP-KPPLHVGQGSLGEI-RPDVAQQRQPVG----KAPPGLGDHLSQDAD 72
PG +G G P +P L GS+G + P +R +G PGL D
Sbjct: 993 PGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGD 1052
Query: 73 AGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G + G R G GP DP LP GD+ ++G PG P G
Sbjct: 1053 KG--------EPGYSEGTRPGPPGPTGDPGLP---GDMGKKGEMGQPGPPGHLGPAGPEG 1101
Query: 133 A 133
A
Sbjct: 1102 A 1102
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 33.9 bits (76), Expect = 0.070
Identities = 33/117 (28%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 26 GVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGG-DHLSLDADA 84
G AG P PP G G R + + P PPG D G + D
Sbjct: 1270 GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1329
Query: 85 GVV----PAGRSGA---EGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQ 134
G PAG+ G +G D DP P G + G PG + P GA+
Sbjct: 1330 GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG---EAGPPGPPGKRGPPGAAGAE 1383
Score = 32.0 bits (71), Expect = 0.27
Identities = 41/126 (32%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 19 PGCGQAVGVAGGPKP---PLHVG----QGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDA 71
PG A G+ GG P P VG +GS G P + +P + PPG
Sbjct: 1047 PGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGP-IGLPGRPGPQGPPGPAGEKGAPG 1105
Query: 72 DAGGDH-LSLDADAGVV----PAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGP---- 122
+ G D G V PAG +G+ G D D E G D G E GP
Sbjct: 1106 EKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG-ENGPPGPP 1164
Query: 123 GLQNPV 128
GLQ PV
Sbjct: 1165 GLQGPV 1170
Score = 30.4 bits (67), Expect = 0.78
Identities = 31/118 (26%), Positives = 37/118 (31%), Gaps = 22/118 (18%)
Query: 25 VGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDADA 84
VG G P PP G + D + P PPG +AG
Sbjct: 1323 VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG------PSGEAG---------- 1366
Query: 85 GVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQLSGKRLGP 142
P G G GP G+ + GAE PG PV G Q + GP
Sbjct: 1367 ---PPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV---GPQGPAGKPGP 1418
Score = 27.7 bits (60), Expect = 5.0
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 18 SPGCGQAVGVAGGPKPPLHVGQ-GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGD 76
+PG G+AG PP G G GE P QQ P + PG + + G
Sbjct: 671 TPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPP-GQQGNPGPQGLPGPQGPIGPPGEKGPQ 729
Query: 77 HLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPV 128
G+ AG GA+GP P + G + GA PG Q P+
Sbjct: 730 -----GKPGL--AGLPGADGPPGHPGKEGQSG------EKGALGPPGPQGPI 768
Score = 27.3 bits (59), Expect = 6.6
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 24 AVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDAD 83
A G+AGG P GQ + + D + P P GL + G + D
Sbjct: 1172 APGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN-----GD 1226
Query: 84 AGVV----------PAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G + P G +GA+GP P VG + + G PG +GG
Sbjct: 1227 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGG 1285
Score = 26.9 bits (58), Expect = 8.6
Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 32/131 (24%)
Query: 26 GVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPP----------GLGDHLSQDA 71
G+ G PP H G+ G G + P Q P+G P GL +
Sbjct: 736 GLPGADGPPGHPGKEGQSGEKGALGPPGPQG--PIGYPGPRGVKGADGVRGLKGSKGEKG 793
Query: 72 DAG-----GDHLSLDADAGVV----------PAGRSGAEGPDADPVLPVEVGDLAVLLDL 116
+ G GD + L D G V P G G GP DP + G+ L
Sbjct: 794 EDGFPGFKGD-MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP 852
Query: 117 GAEEGPGLQNP 127
G PG Q P
Sbjct: 853 GLPGYPGRQGP 863
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 33.9 bits (76), Expect = 0.070
Identities = 33/117 (28%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 26 GVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGG-DHLSLDADA 84
G AG P PP G G R + + P PPG D G + D
Sbjct: 1219 GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1278
Query: 85 GVV----PAGRSGA---EGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQ 134
G PAG+ G +G D DP P G + G PG + P GA+
Sbjct: 1279 GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG---EAGPPGPPGKRGPPGAAGAE 1332
Score = 32.0 bits (71), Expect = 0.27
Identities = 41/126 (32%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 19 PGCGQAVGVAGGPKP---PLHVG----QGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDA 71
PG A G+ GG P P VG +GS G P + +P + PPG
Sbjct: 996 PGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGP-IGLPGRPGPQGPPGPAGEKGAPG 1054
Query: 72 DAGGDH-LSLDADAGVV----PAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGP---- 122
+ G D G V PAG +G+ G D D E G D G E GP
Sbjct: 1055 EKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG-ENGPPGPP 1113
Query: 123 GLQNPV 128
GLQ PV
Sbjct: 1114 GLQGPV 1119
Score = 30.4 bits (67), Expect = 0.78
Identities = 31/118 (26%), Positives = 37/118 (31%), Gaps = 22/118 (18%)
Query: 25 VGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDADA 84
VG G P PP G + D + P PPG +AG
Sbjct: 1272 VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG------PSGEAG---------- 1315
Query: 85 GVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQLSGKRLGP 142
P G G GP G+ + GAE PG PV G Q + GP
Sbjct: 1316 ---PPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV---GPQGPAGKPGP 1367
Score = 27.7 bits (60), Expect = 5.0
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 18 SPGCGQAVGVAGGPKPPLHVGQ-GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGD 76
+PG G+AG PP G G GE P QQ P + PG + + G
Sbjct: 620 TPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPP-GQQGNPGPQGLPGPQGPIGPPGEKGPQ 678
Query: 77 HLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPV 128
G+ AG GA+GP P + G + GA PG Q P+
Sbjct: 679 -----GKPGL--AGLPGADGPPGHPGKEGQSG------EKGALGPPGPQGPI 717
Score = 27.3 bits (59), Expect = 6.6
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 24 AVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDAD 83
A G+AGG P GQ + + D + P P GL + G + D
Sbjct: 1121 APGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN-----GD 1175
Query: 84 AGVV----------PAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G + P G +GA+GP P VG + + G PG +GG
Sbjct: 1176 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGG 1234
Score = 26.9 bits (58), Expect = 8.6
Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 32/131 (24%)
Query: 26 GVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPP----------GLGDHLSQDA 71
G+ G PP H G+ G G + P Q P+G P GL +
Sbjct: 685 GLPGADGPPGHPGKEGQSGEKGALGPPGPQG--PIGYPGPRGVKGADGVRGLKGSKGEKG 742
Query: 72 DAG-----GDHLSLDADAGVV----------PAGRSGAEGPDADPVLPVEVGDLAVLLDL 116
+ G GD + L D G V P G G GP DP + G+ L
Sbjct: 743 EDGFPGFKGD-MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP 801
Query: 117 GAEEGPGLQNP 127
G PG Q P
Sbjct: 802 GLPGYPGRQGP 812
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 33.9 bits (76), Expect = 0.070
Identities = 33/117 (28%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 26 GVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGG-DHLSLDADA 84
G AG P PP G G R + + P PPG D G + D
Sbjct: 1258 GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP 1317
Query: 85 GVV----PAGRSGA---EGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQ 134
G PAG+ G +G D DP P G + G PG + P GA+
Sbjct: 1318 GPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSG---EAGPPGPPGKRGPPGAAGAE 1371
Score = 32.0 bits (71), Expect = 0.27
Identities = 41/126 (32%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 19 PGCGQAVGVAGGPKP---PLHVG----QGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDA 71
PG A G+ GG P P VG +GS G P + +P + PPG
Sbjct: 1035 PGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGP-IGLPGRPGPQGPPGPAGEKGAPG 1093
Query: 72 DAGGDH-LSLDADAGVV----PAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGP---- 122
+ G D G V PAG +G+ G D D E G D G E GP
Sbjct: 1094 EKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKG-ENGPPGPP 1152
Query: 123 GLQNPV 128
GLQ PV
Sbjct: 1153 GLQGPV 1158
Score = 30.4 bits (67), Expect = 0.78
Identities = 31/118 (26%), Positives = 37/118 (31%), Gaps = 22/118 (18%)
Query: 25 VGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDADA 84
VG G P PP G + D + P PPG +AG
Sbjct: 1311 VGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPG------PSGEAG---------- 1354
Query: 85 GVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQLSGKRLGP 142
P G G GP G+ + GAE PG PV G Q + GP
Sbjct: 1355 ---PPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPV---GPQGPAGKPGP 1406
Score = 27.7 bits (60), Expect = 5.0
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 18 SPGCGQAVGVAGGPKPPLHVGQ-GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGD 76
+PG G+AG PP G G GE P QQ P + PG + + G
Sbjct: 659 TPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPP-GQQGNPGPQGLPGPQGPIGPPGEKGPQ 717
Query: 77 HLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPV 128
G+ AG GA+GP P + G + GA PG Q P+
Sbjct: 718 -----GKPGL--AGLPGADGPPGHPGKEGQSG------EKGALGPPGPQGPI 756
Score = 27.3 bits (59), Expect = 6.6
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 15/119 (12%)
Query: 24 AVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDAD 83
A G+AGG P GQ + + D + P P GL + G + D
Sbjct: 1160 APGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGEN-----GD 1214
Query: 84 AGVV----------PAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G + P G +GA+GP P VG + + G PG +GG
Sbjct: 1215 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGG 1273
Score = 26.9 bits (58), Expect = 8.6
Identities = 36/131 (27%), Positives = 45/131 (34%), Gaps = 32/131 (24%)
Query: 26 GVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPP----------GLGDHLSQDA 71
G+ G PP H G+ G G + P Q P+G P GL +
Sbjct: 724 GLPGADGPPGHPGKEGQSGEKGALGPPGPQG--PIGYPGPRGVKGADGVRGLKGSKGEKG 781
Query: 72 DAG-----GDHLSLDADAGVV----------PAGRSGAEGPDADPVLPVEVGDLAVLLDL 116
+ G GD + L D G V P G G GP DP + G+ L
Sbjct: 782 EDGFPGFKGD-MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP 840
Query: 117 GAEEGPGLQNP 127
G PG Q P
Sbjct: 841 GLPGYPGRQGP 851
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 33.9 bits (76), Expect = 0.070
Identities = 31/91 (34%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 12 AGRFSRSPGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHL---- 67
AG +R+P G + G A P P G+GS RP Q+ P +PP G
Sbjct: 12 AGERARAPSGGGS-GQAQRPGP----GRGSWR--RPPRRQRPGPAAPSPPARGAAAWGRS 64
Query: 68 --SQDADAGGDHLSLDADAGVVPAGRSGAEG 96
A +GGD L AG P GR G G
Sbjct: 65 GGGPAAQSGGDGGGLPRRAGAEPGGRGGGSG 95
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 33.9 bits (76), Expect = 0.070
Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 24/116 (20%)
Query: 24 AVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG-----GDHL 78
A GV G PP V G D + P + P GL D+G GD
Sbjct: 1567 ATGVQGERGPPGLVLPG-------DPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPG 1619
Query: 79 SLDADAGVVPAGRSGA------EGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPV 128
V P GR G EGP DP LP + G + G PG++ PV
Sbjct: 1620 RPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAG------ERGLRGAPGVRGPV 1669
Score = 29.3 bits (64), Expect = 1.7
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 19/89 (21%)
Query: 25 VGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDADA 84
VG G P PP G + + +P PPG G L
Sbjct: 2179 VGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRG---------------LTGPT 2223
Query: 85 GVV----PAGRSGAEGPDADPVLPVEVGD 109
G V P G SG GP P LP +VG+
Sbjct: 2224 GAVGLPGPPGPSGLVGPQGSPGLPGQVGE 2252
Score = 27.7 bits (60), Expect = 5.0
Identities = 41/148 (27%), Positives = 53/148 (35%), Gaps = 26/148 (17%)
Query: 18 SPGCGQAVGVAGGPKPPLHVGQ-GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGD 76
+PG VG G P G+ GS G P + +P PPG D G
Sbjct: 1662 APGVRGPVGEKGDQGDPGEDGRNGSPGSSGPK-GDRGEPGPPGPPGR----LVDTGPGAR 1716
Query: 77 HLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAV---LLDLGAEEGPGLQNPV----- 128
D G + G GP DP LP G+ + G + PG++ P
Sbjct: 1717 EKGEPGDRG-----QEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGD 1771
Query: 129 -----LLGGAQLSGK--RLGPSSRHWAA 149
L G + L GK GPS + AA
Sbjct: 1772 RGPPGLDGRSGLDGKPGAAGPSGPNGAA 1799
Score = 26.9 bits (58), Expect = 8.6
Identities = 34/116 (29%), Positives = 40/116 (34%), Gaps = 20/116 (17%)
Query: 19 PGCGQAVGVAG--GPKPPLHVGQGSLGEIRPDVAQQRQPVGKA----PPGLGDHLSQDAD 72
PG A G+AG GP+ P + +G GE P P G PPG +
Sbjct: 2185 PGPPGAPGLAGPAGPQGPSGL-KGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGS 2243
Query: 73 AGGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPV 128
G + P GR GA G D D P G PGL PV
Sbjct: 2244 PGLPGQVGETGKPGAP-GRDGASGKDGDRGSP------------GVPGSPGLPGPV 2286
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.3 bits (72), Expect = 0.20
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 26 GVAGGPKPPLHVGQ-GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDADA 84
G G P P G+ G+ G P P PPGLG + + G D + A
Sbjct: 141 GEKGAPGPRGRDGEPGTPGNPGPP----GPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL 196
Query: 85 GVV-----------PAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPG 123
GV+ P G +GA GP P E G+ V +G PG
Sbjct: 197 GVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG 246
Score = 30.4 bits (67), Expect = 0.78
Identities = 29/112 (25%), Positives = 38/112 (33%), Gaps = 1/112 (0%)
Query: 16 SRSPGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGG 75
S PG A G +G PP VG L + ++ P PPG D G
Sbjct: 1001 SGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDR-G 1059
Query: 76 DHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
+ ++ A P G G GP E G + G G+Q P
Sbjct: 1060 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGP 1111
Score = 28.9 bits (63), Expect = 2.3
Identities = 42/148 (28%), Positives = 53/148 (35%), Gaps = 28/148 (18%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQ-------PVGKAPPGLGDHLSQDA 71
PG A G+AG PK +G +GE P+ A + P+G PPG +
Sbjct: 752 PGERGAAGIAG-PKGD----RGDVGEKGPEGAPGKDGGRGLTGPIG--PPGPAGANGEKG 804
Query: 72 DAGGDHLSLDADAGVVP-----------AGRSGAEGPDADPVLPVEVGDLAVLLDLGAEE 120
+ G + A A P AG +G G D P E G+ D GA
Sbjct: 805 EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA-- 862
Query: 121 GPGLQNPVLLGGAQLSGKRLGPSSRHWA 148
PG Q P G Q GP A
Sbjct: 863 -PGPQGPSGAPGPQGPTGVTGPKGARGA 889
Score = 26.9 bits (58), Expect = 8.6
Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 26 GVAGGPKPPLHVG-QGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDADA 84
G+ G P PP G QG+ G P + R P G P D + G
Sbjct: 1137 GLQGLPGPPGPSGDQGASGPAGP--SGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1194
Query: 85 GVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG-AEEGP 122
PAG G GP P P D++ LG E+GP
Sbjct: 1195 ETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1233
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.3 bits (72), Expect = 0.20
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 26 GVAGGPKPPLHVGQ-GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDADA 84
G G P P G+ G+ G P P PPGLG + + G D + A
Sbjct: 72 GEKGAPGPRGRDGEPGTPGNPGPP----GPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL 127
Query: 85 GVV-----------PAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPG 123
GV+ P G +GA GP P E G+ V +G PG
Sbjct: 128 GVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG 177
Score = 30.4 bits (67), Expect = 0.78
Identities = 29/112 (25%), Positives = 38/112 (33%), Gaps = 1/112 (0%)
Query: 16 SRSPGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGG 75
S PG A G +G PP VG L + ++ P PPG D G
Sbjct: 932 SGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDR-G 990
Query: 76 DHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNP 127
+ ++ A P G G GP E G + G G+Q P
Sbjct: 991 ETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGP 1042
Score = 28.9 bits (63), Expect = 2.3
Identities = 42/148 (28%), Positives = 53/148 (35%), Gaps = 28/148 (18%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQ-------PVGKAPPGLGDHLSQDA 71
PG A G+AG PK +G +GE P+ A + P+G PPG +
Sbjct: 683 PGERGAAGIAG-PKGD----RGDVGEKGPEGAPGKDGGRGLTGPIG--PPGPAGANGEKG 735
Query: 72 DAGGDHLSLDADAGVVP-----------AGRSGAEGPDADPVLPVEVGDLAVLLDLGAEE 120
+ G + A A P AG +G G D P E G+ D GA
Sbjct: 736 EVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA-- 793
Query: 121 GPGLQNPVLLGGAQLSGKRLGPSSRHWA 148
PG Q P G Q GP A
Sbjct: 794 -PGPQGPSGAPGPQGPTGVTGPKGARGA 820
Score = 26.9 bits (58), Expect = 8.6
Identities = 30/99 (30%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 26 GVAGGPKPPLHVG-QGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDADA 84
G+ G P PP G QG+ G P + R P G P D + G
Sbjct: 1068 GLQGLPGPPGPSGDQGASGPAGP--SGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1125
Query: 85 GVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG-AEEGP 122
PAG G GP P P D++ LG E+GP
Sbjct: 1126 ETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGP 1164
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 32.3 bits (72), Expect = 0.20
Identities = 39/128 (30%), Positives = 48/128 (37%), Gaps = 10/128 (7%)
Query: 18 SPGCGQAVGVAGGPKPPLHVGQ-GSLGEIRPDVAQQRQPVGK-APPGLGDHLSQDADAGG 75
+PG G AG P PP G G G P R P G+ PG + D G
Sbjct: 549 APGSIGRPGPAGPPGPPGPPGSIGHPGARGPP--GYRGPTGELGDPGPRGNQGDRGDKGA 606
Query: 76 DHLSLDADAGVV-PAGRSGA-----EGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVL 129
LD G P G G +G D P P GD + +GA+ PG+ +
Sbjct: 607 AGAGLDGPEGDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPGICDTSA 666
Query: 130 LGGAQLSG 137
GA L G
Sbjct: 667 CQGAVLGG 674
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 31.6 bits (70), Expect = 0.35
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 8/119 (6%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG---- 74
PG G G P PP G+ +R ++ P PGL + G
Sbjct: 871 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGS 930
Query: 75 -GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G+ + + + P GR G +GP P E G +G G+Q PV L G
Sbjct: 931 PGERGAAGSGGPIGPPGRPGPQGP---PGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPG 986
Score = 30.8 bits (68), Expect = 0.59
Identities = 38/118 (32%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 26 GVAGGPKPP-LHVGQGSLGEI-RPDVAQQRQPVGKA-PPGLGDHLSQDADAGGDHLSLDA 82
G AG P P L GS+G+ RP Q P G PPGL L DA A G+
Sbjct: 1271 GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG-LRGDAGAKGEKGHPGL 1329
Query: 83 DAGVVPAGRSGAEG------PDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQ 134
+ P G G +G P P E+G +G PGL P GA+
Sbjct: 1330 IGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAK 1387
Score = 29.3 bits (64), Expect = 1.7
Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 32/131 (24%)
Query: 26 GVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPP----------GLGDHLSQDA 71
G+ G PP H G+ G+ G P Q P+G P GL H +
Sbjct: 596 GMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG--PLGYPGPRGVKGVDGIRGLKGHKGEKG 653
Query: 72 DAG-----GDHLSLDADAGVV----------PAGRSGAEGPDADPVLPVEVGDLAVLLDL 116
+ G GD + + D G V P G G GP DP P +G+ L
Sbjct: 654 EDGFPGFKGD-IGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVP 712
Query: 117 GAEEGPGLQNP 127
G PG Q P
Sbjct: 713 GLPGYPGRQGP 723
Score = 28.9 bits (63), Expect = 2.3
Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 23/136 (16%)
Query: 20 GCGQAVGVAGGPKP---PLHVGQ----GSLGEIRPDVAQQRQ-PVG----KAPPGLGDHL 67
G G +G G P P P G+ G G I P Q PVG PPG+
Sbjct: 938 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGED 997
Query: 68 SQDADAG-----------GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDL 116
+ G G+H + P G+ GA G D +P G D
Sbjct: 998 GDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDE 1057
Query: 117 GAEEGPGLQNPVLLGG 132
G G P+ L G
Sbjct: 1058 GTRGFNGPPGPIGLQG 1073
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 31.6 bits (70), Expect = 0.35
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 8/119 (6%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG---- 74
PG G G P PP G+ +R ++ P PGL + G
Sbjct: 850 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGS 909
Query: 75 -GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G+ + + + P GR G +GP P E G +G G+Q PV L G
Sbjct: 910 PGERGAAGSGGPIGPPGRPGPQGP---PGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPG 965
Score = 30.8 bits (68), Expect = 0.59
Identities = 38/118 (32%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 26 GVAGGPKPP-LHVGQGSLGEI-RPDVAQQRQPVGKA-PPGLGDHLSQDADAGGDHLSLDA 82
G AG P P L GS+G+ RP Q P G PPGL L DA A G+
Sbjct: 1250 GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG-LRGDAGAKGEKGHPGL 1308
Query: 83 DAGVVPAGRSGAEG------PDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQ 134
+ P G G +G P P E+G +G PGL P GA+
Sbjct: 1309 IGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAK 1366
Score = 29.3 bits (64), Expect = 1.7
Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 32/131 (24%)
Query: 26 GVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPP----------GLGDHLSQDA 71
G+ G PP H G+ G+ G P Q P+G P GL H +
Sbjct: 575 GMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG--PLGYPGPRGVKGVDGIRGLKGHKGEKG 632
Query: 72 DAG-----GDHLSLDADAGVV----------PAGRSGAEGPDADPVLPVEVGDLAVLLDL 116
+ G GD + + D G V P G G GP DP P +G+ L
Sbjct: 633 EDGFPGFKGD-IGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVP 691
Query: 117 GAEEGPGLQNP 127
G PG Q P
Sbjct: 692 GLPGYPGRQGP 702
Score = 28.9 bits (63), Expect = 2.3
Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 23/136 (16%)
Query: 20 GCGQAVGVAGGPKP---PLHVGQ----GSLGEIRPDVAQQRQ-PVG----KAPPGLGDHL 67
G G +G G P P P G+ G G I P Q PVG PPG+
Sbjct: 917 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGED 976
Query: 68 SQDADAG-----------GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDL 116
+ G G+H + P G+ GA G D +P G D
Sbjct: 977 GDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDE 1036
Query: 117 GAEEGPGLQNPVLLGG 132
G G P+ L G
Sbjct: 1037 GTRGFNGPPGPIGLQG 1052
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 31.6 bits (70), Expect = 0.35
Identities = 31/119 (26%), Positives = 43/119 (36%), Gaps = 8/119 (6%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQGSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG---- 74
PG G G P PP G+ +R ++ P PGL + G
Sbjct: 957 PGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGS 1016
Query: 75 -GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGG 132
G+ + + + P GR G +GP P E G +G G+Q PV L G
Sbjct: 1017 PGERGAAGSGGPIGPPGRPGPQGP---PGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPG 1072
Score = 30.8 bits (68), Expect = 0.59
Identities = 38/118 (32%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 26 GVAGGPKPP-LHVGQGSLGEI-RPDVAQQRQPVGKA-PPGLGDHLSQDADAGGDHLSLDA 82
G AG P P L GS+G+ RP Q P G PPGL L DA A G+
Sbjct: 1357 GPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG-LRGDAGAKGEKGHPGL 1415
Query: 83 DAGVVPAGRSGAEG------PDADPVLPVEVGDLAVLLDLGAEEGPGLQNPVLLGGAQ 134
+ P G G +G P P E+G +G PGL P GA+
Sbjct: 1416 IGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAK 1473
Score = 29.3 bits (64), Expect = 1.7
Identities = 37/131 (28%), Positives = 47/131 (35%), Gaps = 32/131 (24%)
Query: 26 GVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPP----------GLGDHLSQDA 71
G+ G PP H G+ G+ G P Q P+G P GL H +
Sbjct: 682 GMPGSDGPPGHPGKEGPPGTKGNQGPSGPQG--PLGYPGPRGVKGVDGIRGLKGHKGEKG 739
Query: 72 DAG-----GDHLSLDADAGVV----------PAGRSGAEGPDADPVLPVEVGDLAVLLDL 116
+ G GD + + D G V P G G GP DP P +G+ L
Sbjct: 740 EDGFPGFKGD-IGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVP 798
Query: 117 GAEEGPGLQNP 127
G PG Q P
Sbjct: 799 GLPGYPGRQGP 809
Score = 28.9 bits (63), Expect = 2.3
Identities = 36/136 (26%), Positives = 45/136 (33%), Gaps = 23/136 (16%)
Query: 20 GCGQAVGVAGGPKP---PLHVGQ----GSLGEIRPDVAQQRQ-PVG----KAPPGLGDHL 67
G G +G G P P P G+ G G I P Q PVG PPG+
Sbjct: 1024 GSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGED 1083
Query: 68 SQDADAG-----------GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDL 116
+ G G+H + P G+ GA G D +P G D
Sbjct: 1084 GDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDE 1143
Query: 117 GAEEGPGLQNPVLLGG 132
G G P+ L G
Sbjct: 1144 GTRGFNGPPGPIGLQG 1159
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 31.6 bits (70), Expect = 0.35
Identities = 42/149 (28%), Positives = 53/149 (35%), Gaps = 16/149 (10%)
Query: 2 AWASGFLCSLAGRFSRSPGCGQAVGVAGG----PKPPLHVGQG---SLGEIRPDV----- 49
A A+ + A + SP G AVG+AG P+PP QG G R D+
Sbjct: 104 AAAAAAAAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTA 163
Query: 50 AQQRQPVGKAPPGLGDHLSQDADAGGDHLSLDADAGVVPAGR----SGAEGPDADPVLPV 105
R P PP H G + A A A +G + P +L
Sbjct: 164 LHHRGPPHLGPPPPPPHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQSLLYS 223
Query: 106 EVGDLAVLLDLGAEEGPGLQNPVLLGGAQ 134
+ G V L A GPG GGAQ
Sbjct: 224 QPGGFTVNGMLSAPPGPGGGGGGAGGGAQ 252
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 31.2 bits (69), Expect = 0.46
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 26 GVAGGPKPPLHVG-QGSLGEIRPDVAQQRQPVGKAPPGL-GDHLSQDA----DAGGDHLS 79
G G P P VG +G G+ P V ++ P + PPG G D D G
Sbjct: 835 GPQGFPGTPGDVGPKGDKGD--PGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFG 892
Query: 80 LDADAGVVPAGRSGAEGPDADPVLPVEVGDLAV 112
D +A P G G GP P LP E G V
Sbjct: 893 GDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGV 925
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 31.2 bits (69), Expect = 0.46
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 26 GVAGGPKPPLHVG-QGSLGEIRPDVAQQRQPVGKAPPGL-GDHLSQDA----DAGGDHLS 79
G G P P VG +G G+ P V ++ P + PPG G D D G
Sbjct: 420 GPQGFPGTPGDVGPKGDKGD--PGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFG 477
Query: 80 LDADAGVVPAGRSGAEGPDADPVLPVEVGDLAV 112
D +A P G G GP P LP E G V
Sbjct: 478 GDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGV 510
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 31.2 bits (69), Expect = 0.46
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 26 GVAGGPKPPLHVG-QGSLGEIRPDVAQQRQPVGKAPPGL-GDHLSQDA----DAGGDHLS 79
G G P P VG +G G+ P V ++ P + PPG G D D G
Sbjct: 600 GPQGFPGTPGDVGPKGDKGD--PGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFG 657
Query: 80 LDADAGVVPAGRSGAEGPDADPVLPVEVGDLAV 112
D +A P G G GP P LP E G V
Sbjct: 658 GDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGV 690
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 31.2 bits (69), Expect = 0.46
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 19 PGCGQAVGVAGGPKPPLHVG----QGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADA 73
PG GV G PP G +G+ GE PD P G K PG G+ + + +
Sbjct: 396 PGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPD-----GPKGSKGEPGKGEMVDYNGNI 450
Query: 74 GGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG--AEEGP 122
+ A + P G G GP P +P + G++ + G E+GP
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 501
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 31.2 bits (69), Expect = 0.46
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 19 PGCGQAVGVAGGPKPPLHVG----QGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADA 73
PG GV G PP G +G+ GE PD P G K PG G+ + + +
Sbjct: 345 PGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPD-----GPKGSKGEPGKGEMVDYNGNI 399
Query: 74 GGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG--AEEGP 122
+ A + P G G GP P +P + G++ + G E+GP
Sbjct: 400 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 450
Score = 26.9 bits (58), Expect = 8.6
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG 74
PG +G+ G P P GQ G GE R+ + P L SQ
Sbjct: 157 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEY-----PHRECLSSMPAALRS--SQIIALK 209
Query: 75 GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQ 125
G+ P G G GP P LP +G + G + PG+Q
Sbjct: 210 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQ 260
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 31.2 bits (69), Expect = 0.46
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 19 PGCGQAVGVAGGPKPPLHVG----QGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADA 73
PG GV G PP G +G+ GE PD P G K PG G+ + + +
Sbjct: 334 PGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPD-----GPKGSKGEPGKGEMVDYNGNI 388
Query: 74 GGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG--AEEGP 122
+ A + P G G GP P +P + G++ + G E+GP
Sbjct: 389 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 439
Score = 27.3 bits (59), Expect = 6.6
Identities = 30/111 (27%), Positives = 38/111 (34%), Gaps = 30/111 (27%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG 74
PG +G+ G P P GQ G GE P +Q Q + PPG
Sbjct: 165 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEY-PHRGEQSQASIQGPPG------------ 211
Query: 75 GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQ 125
P G G GP P LP +G + G + PG+Q
Sbjct: 212 -------------PPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQ 249
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 31.2 bits (69), Expect = 0.46
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 19 PGCGQAVGVAGGPKPPLHVG----QGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADA 73
PG GV G PP G +G+ GE PD P G K PG G+ + + +
Sbjct: 336 PGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPD-----GPKGSKGEPGKGEMVDYNGNI 390
Query: 74 GGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG--AEEGP 122
+ A + P G G GP P +P + G++ + G E+GP
Sbjct: 391 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 441
Score = 26.9 bits (58), Expect = 8.6
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG 74
PG +G+ G P P GQ G GE R+ + P L SQ
Sbjct: 148 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEY-----PHRECLSSMPAALRS--SQIIALK 200
Query: 75 GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQ 125
G+ P G G GP P LP +G + G + PG+Q
Sbjct: 201 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQ 251
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 31.2 bits (69), Expect = 0.46
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 19 PGCGQAVGVAGGPKPPLHVG----QGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADA 73
PG GV G PP G +G+ GE PD P G K PG G+ + + +
Sbjct: 339 PGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPD-----GPKGSKGEPGKGEMVDYNGNI 393
Query: 74 GGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG--AEEGP 122
+ A + P G G GP P +P + G++ + G E+GP
Sbjct: 394 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 444
Score = 27.3 bits (59), Expect = 6.6
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG 74
PG +G+ G P P GQ G GE + V APP + + +
Sbjct: 148 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQS 207
Query: 75 GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQ 125
S+ G P G G GP P LP +G + G + PG+Q
Sbjct: 208 --QASIQGPPG--PPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQ 254
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 31.2 bits (69), Expect = 0.46
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 19 PGCGQAVGVAGGPKPPLHVG----QGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADA 73
PG GV G PP G +G+ GE PD P G K PG G+ + + +
Sbjct: 374 PGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPD-----GPKGSKGEPGKGEMVDYNGNI 428
Query: 74 GGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG--AEEGP 122
+ A + P G G GP P +P + G++ + G E+GP
Sbjct: 429 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 479
Score = 26.9 bits (58), Expect = 8.6
Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 11/111 (9%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG 74
PG +G+ G P P GQ G GE R+ + P L SQ
Sbjct: 186 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEY-----PHRECLSSMPAALRS--SQIIALK 238
Query: 75 GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQ 125
G+ P G G GP P LP +G + G + PG+Q
Sbjct: 239 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQ 289
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 31.2 bits (69), Expect = 0.46
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 19 PGCGQAVGVAGGPKPPLHVG----QGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADA 73
PG GV G PP G +G+ GE PD P G K PG G+ + + +
Sbjct: 343 PGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPD-----GPKGSKGEPGKGEMVDYNGNI 397
Query: 74 GGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG--AEEGP 122
+ A + P G G GP P +P + G++ + G E+GP
Sbjct: 398 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 448
Score = 27.3 bits (59), Expect = 6.6
Identities = 30/111 (27%), Positives = 38/111 (34%), Gaps = 30/111 (27%)
Query: 19 PGCGQAVGVAGGPKPPLHVGQ----GSLGEIRPDVAQQRQPVGKAPPGLGDHLSQDADAG 74
PG +G+ G P P GQ G GE P +Q Q + PPG
Sbjct: 174 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEY-PHRGEQSQASIQGPPG------------ 220
Query: 75 GDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLGAEEGPGLQ 125
P G G GP P LP +G + G + PG+Q
Sbjct: 221 -------------PPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQ 258
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 31.2 bits (69), Expect = 0.46
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 19 PGCGQAVGVAGGPKPPLHVG----QGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADA 73
PG GV G PP G +G+ GE PD P G K PG G+ + + +
Sbjct: 396 PGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPD-----GPKGSKGEPGKGEMVDYNGNI 450
Query: 74 GGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG--AEEGP 122
+ A + P G G GP P +P + G++ + G E+GP
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 501
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 31.2 bits (69), Expect = 0.46
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 19 PGCGQAVGVAGGPKPPLHVG----QGSLGEIRPDVAQQRQPVG-KAPPGLGDHLSQDADA 73
PG GV G PP G +G+ GE PD P G K PG G+ + + +
Sbjct: 396 PGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPD-----GPKGSKGEPGKGEMVDYNGNI 450
Query: 74 GGDHLSLDADAGVVPAGRSGAEGPDADPVLPVEVGDLAVLLDLG--AEEGP 122
+ A + P G G GP P +P + G++ + G E+GP
Sbjct: 451 NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGP 501
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,716,097
Number of Sequences: 37866
Number of extensions: 496709
Number of successful extensions: 1592
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 400
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.