Search of human proteins with 239756605

Search of human proteins with 239756605

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756605 PREDICTED: similar to ribosomal protein S11 [Homo
sapiens]
         (67 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756605 PREDICTED: similar to ribosomal protein S11 [Homo s...   140   3e-34
gi|4506681 ribosomal protein S11 [Homo sapiens]                        99   9e-22

>gi|239756605 PREDICTED: similar to ribosomal protein S11 [Homo
          sapiens]
          Length = 67

 Score =  140 bits (352), Expect = 3e-34
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MWSSRKHLSDKIRCYKNMSIHLSTFFRDVQIGHIVTVGECRPLSKTVRFNVLKVTKAAGT 60
          MWSSRKHLSDKIRCYKNMSIHLSTFFRDVQIGHIVTVGECRPLSKTVRFNVLKVTKAAGT
Sbjct: 1  MWSSRKHLSDKIRCYKNMSIHLSTFFRDVQIGHIVTVGECRPLSKTVRFNVLKVTKAAGT 60

Query: 61 KKQFQKF 67
          KKQFQKF
Sbjct: 61 KKQFQKF 67


>gi|4506681 ribosomal protein S11 [Homo sapiens]
          Length = 158

 Score = 98.6 bits (244), Expect = 9e-22
 Identities = 48/53 (90%), Positives = 50/53 (94%)

Query: 15  YKNMSIHLSTFFRDVQIGHIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 67
           +KNMS+HLS  FRDVQIG IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 106 HKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,207,954
Number of Sequences: 37866
Number of extensions: 62018
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 2
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.