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Search of human proteins with 239756522
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756522 PREDICTED: hypothetical protein [Homo sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756522 PREDICTED: hypothetical protein [Homo sapiens] 406 e-114
gi|239751030 PREDICTED: hypothetical protein XP_002347679 [Homo ... 406 e-114
gi|239745460 PREDICTED: hypothetical protein XP_002343497 [Homo ... 406 e-114
gi|66571327 ring finger protein 213 [Homo sapiens] 32 0.34
gi|134031945 SCO-spondin [Homo sapiens] 32 0.44
gi|31543392 peroxisome proliferator-activated receptor gamma, co... 31 0.58
gi|20149643 zinc finger, HIT type 6 [Homo sapiens] 31 0.76
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ... 31 0.76
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ... 31 0.76
gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens] 29 2.2
gi|71979937 sialophorin [Homo sapiens] 29 2.9
gi|4507181 sialophorin [Homo sapiens] 29 2.9
gi|5803215 uroplakin 2 [Homo sapiens] 28 3.7
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 28 4.9
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 28 4.9
gi|157739942 gemin 5 [Homo sapiens] 28 4.9
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 28 6.4
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 28 6.4
gi|94536800 empty spiracles homolog 1 [Homo sapiens] 27 8.4
>gi|239756522 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 406 bits (1044), Expect = e-114
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MTDALLLLLSSWPQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRP 60
MTDALLLLLSSWPQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRP
Sbjct: 1 MTDALLLLLSSWPQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRP 60
Query: 61 LSREVCLEDGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDP 120
LSREVCLEDGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDP
Sbjct: 61 LSREVCLEDGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDP 120
Query: 121 APVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFLPEVQLQ 180
APVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFLPEVQLQ
Sbjct: 121 APVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFLPEVQLQ 180
Query: 181 VFFTVRQERPEGLP 194
VFFTVRQERPEGLP
Sbjct: 181 VFFTVRQERPEGLP 194
>gi|239751030 PREDICTED: hypothetical protein XP_002347679 [Homo
sapiens]
Length = 194
Score = 406 bits (1044), Expect = e-114
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MTDALLLLLSSWPQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRP 60
MTDALLLLLSSWPQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRP
Sbjct: 1 MTDALLLLLSSWPQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRP 60
Query: 61 LSREVCLEDGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDP 120
LSREVCLEDGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDP
Sbjct: 61 LSREVCLEDGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDP 120
Query: 121 APVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFLPEVQLQ 180
APVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFLPEVQLQ
Sbjct: 121 APVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFLPEVQLQ 180
Query: 181 VFFTVRQERPEGLP 194
VFFTVRQERPEGLP
Sbjct: 181 VFFTVRQERPEGLP 194
>gi|239745460 PREDICTED: hypothetical protein XP_002343497 [Homo
sapiens]
Length = 194
Score = 406 bits (1044), Expect = e-114
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MTDALLLLLSSWPQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRP 60
MTDALLLLLSSWPQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRP
Sbjct: 1 MTDALLLLLSSWPQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRP 60
Query: 61 LSREVCLEDGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDP 120
LSREVCLEDGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDP
Sbjct: 61 LSREVCLEDGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDP 120
Query: 121 APVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFLPEVQLQ 180
APVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFLPEVQLQ
Sbjct: 121 APVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFLPEVQLQ 180
Query: 181 VFFTVRQERPEGLP 194
VFFTVRQERPEGLP
Sbjct: 181 VFFTVRQERPEGLP 194
>gi|66571327 ring finger protein 213 [Homo sapiens]
Length = 3280
Score = 32.0 bits (71), Expect = 0.34
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 55 GATGRPLSREVCLE-----DGSDFKKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQ 109
G GRP+ + +C++ G D K P+DG H D GH +G Q +
Sbjct: 2587 GECGRPMEQSICIDCHAPIGGIDHK---PRDGF-HLVKDKADRTQTGHVLG----NPQRR 2638
Query: 110 GFQEAADGVDPAPVFVYVLPCARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQ 165
G+ P VF+ + + LL G Q A + + PP V + G LQQ
Sbjct: 2639 DVVTCDRGLPPV-VFLLIRLLTHLALLLGASQSSQALINIIKPP--VRDPKGFLQQ 2691
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 31.6 bits (70), Expect = 0.44
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 59 RPLSREVCLEDGSD----FKKDVPQDGCPHQQAHVTDPQGC 95
R S +VC E G +++ P +GCP AHVT GC
Sbjct: 3685 RTCSTQVCREAGCPAGRLYRECQPGEGCPFSCAHVTQQVGC 3725
>gi|31543392 peroxisome proliferator-activated receptor gamma,
coactivator 1 beta [Homo sapiens]
Length = 1023
Score = 31.2 bits (69), Expect = 0.58
Identities = 47/197 (23%), Positives = 67/197 (34%), Gaps = 29/197 (14%)
Query: 13 PQLQHPSPFHSILSGPLQPLEALGQLQRTSPAPGYPV--------WLLWEGATGRPLSRE 64
P PSP S P ++ L LQ+ A YP W A R S+
Sbjct: 131 PSSAPPSPAPEKPSAPAPEVDELSLLQKLLLATSYPTSSSDTQKEGTAWRQAGLRSKSQR 190
Query: 65 VCLEDGSDFKKDVP-----QDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVD 119
C++ S K P C H+T Q C G+ Q+ A + +
Sbjct: 191 PCVKADSTQDKKAPMMQSQSRSCTELHKHLTSAQCCLQDRGLQPPCLQSPRL-PAKEDKE 249
Query: 120 PAPVFVYVLPCARVELLPGVVQDHLAALQTLVP--PALVEELSGSLQQCHHAPLHFLPEV 177
P C + P QD L AL P P E++ +Q + + LP+
Sbjct: 250 PGE------DCPSPQPAPASPQDSL-ALGRADPGAPVSQEDMQAMVQLIRYMHTYCLPQR 302
Query: 178 QLQVFFTVRQERPEGLP 194
+L + PE LP
Sbjct: 303 KLP------PQTPEPLP 313
>gi|20149643 zinc finger, HIT type 6 [Homo sapiens]
Length = 470
Score = 30.8 bits (68), Expect = 0.76
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 66 CLEDGSDF-KKDVPQDGCPHQQAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDPAPVF 124
C+++ DF KK++ D ++ + P GC + + RC +T G +EA +
Sbjct: 181 CVKEEKDFLKKEIVDDTKVKEEPPINHPVGCKRKLAMSRC--ETCGTEEAKYRCPRCMRY 238
Query: 125 VYVLPCA---RVELLPGVVQDHLA 145
LPC + EL V+D A
Sbjct: 239 SCSLPCVKKHKAELTCNGVRDKTA 262
>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
[Homo sapiens]
Length = 2649
Score = 30.8 bits (68), Expect = 0.76
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 88 HVTDPQGCGHSVGILRCLAQTQGFQEAADGVDPAPVFVYVLPCARVELLPGVVQDHLAAL 147
H+TD G+L A+ QG A G +P P+ L + LLPG +D LA
Sbjct: 1371 HITDVASFVPRDGVLDVEARRQGAAFYAPGREPVPMLPASLCQDVLSLLPG--RDRLAIS 1428
Query: 148 QTLVPPALVEELSGSLQQCHHAP 170
L +E+ SG L+ AP
Sbjct: 1429 LFLT----MEKASGQLKSLRFAP 1447
>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
[Homo sapiens]
Length = 2080
Score = 30.8 bits (68), Expect = 0.76
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 88 HVTDPQGCGHSVGILRCLAQTQGFQEAADGVDPAPVFVYVLPCARVELLPGVVQDHLAAL 147
H+TD G+L A+ QG A G +P P+ L + LLPG +D LA
Sbjct: 802 HITDVASFVPRDGVLDVEARRQGAAFYAPGREPVPMLPASLCQDVLSLLPG--RDRLAIS 859
Query: 148 QTLVPPALVEELSGSLQQCHHAP 170
L +E+ SG L+ AP
Sbjct: 860 LFLT----MEKASGQLKSLRFAP 878
>gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens]
Length = 1992
Score = 29.3 bits (64), Expect = 2.2
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 93 QGCGHSVGILRCLAQTQGFQEAADGVDPAPVFVYVLPCARVELLPGVVQDHLAALQTLVP 152
Q ++ L C A QE D V +P +Y L EL+P + ++ + A+ T++
Sbjct: 692 QNIAETLHFLLCGASNGSCQEQIDLVPRSPQELYELTSLICELMPCLPKEGIFAVDTMLK 751
Query: 153 PALVEELSGSLQQ 165
+ G++ Q
Sbjct: 752 KGNAQNTDGAIWQ 764
>gi|71979937 sialophorin [Homo sapiens]
Length = 400
Score = 28.9 bits (63), Expect = 2.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 41 TSPAPGYPVWLLWEGATGRPLSREVCLEDGSDFKKDVPQDGCPHQQAHVTDP 92
TS G P+W +TG PL ++ S VPQ+ PH +H P
Sbjct: 69 TSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQE-TPHATSHPAVP 119
>gi|4507181 sialophorin [Homo sapiens]
Length = 400
Score = 28.9 bits (63), Expect = 2.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 41 TSPAPGYPVWLLWEGATGRPLSREVCLEDGSDFKKDVPQDGCPHQQAHVTDP 92
TS G P+W +TG PL ++ S VPQ+ PH +H P
Sbjct: 69 TSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQE-TPHATSHPAVP 119
>gi|5803215 uroplakin 2 [Homo sapiens]
Length = 184
Score = 28.5 bits (62), Expect = 3.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 135 LLPGVVQDHLAALQTLVPPALVEELSGSLQQCH 167
L PG ++++L L+ PAL E L +L CH
Sbjct: 20 LSPGAADFNISSLSGLLSPALTESLLVALPPCH 52
>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
sapiens]
Length = 219
Score = 28.1 bits (61), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 17 HPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGA 56
HP H++LS L P+E+ G +R P P + GA
Sbjct: 102 HPQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGA 141
>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
sapiens]
Length = 219
Score = 28.1 bits (61), Expect = 4.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 17 HPSPFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGA 56
HP H++LS L P+E+ G +R P P + GA
Sbjct: 102 HPQQQHTVLSQSLSPMESEGPHRRRKPGAESPRRAIEAGA 141
>gi|157739942 gemin 5 [Homo sapiens]
Length = 1508
Score = 28.1 bits (61), Expect = 4.9
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 17 HPSPFHSI------LSGPLQPLEALGQLQRT----SPAPGYPVWLLWEGATGRPLSREVC 66
HP FH + L G LQ G+L +PA GY VW LW ++++C
Sbjct: 918 HPELFHQLMLWKGDLKGVLQTAAERGELTDNLVAMAPAAGYHVW-LW---AVEAFAKQLC 973
Query: 67 LED 69
+D
Sbjct: 974 FQD 976
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 27.7 bits (60), Expect = 6.4
Identities = 49/183 (26%), Positives = 62/183 (33%), Gaps = 41/183 (22%)
Query: 18 PSPFHSILSGPL-------QPLEALGQLQRTSPAPGYPVWLLWEGATGRPLSREVCLEDG 70
PSP + S P+ Q L +LG Q+ + APG PV G
Sbjct: 645 PSPAQCVCSPPVSEGPVLPQSLPSLGAYQQPTAAPGLPV--------------------G 684
Query: 71 SDFKKDVPQDGCPHQ-QAHVTDPQGCGHSVGILRCLAQTQGFQEAADGVDPAPVFVYVLP 129
S VP CP Q H DP ++ L G PAP P
Sbjct: 685 S-----VPAPACPPSLQQHFPDP-----AMSFAPVLPPPSTPMPTGPG-QPAPPGQQPPP 733
Query: 130 CARVELLPGVVQDHLAALQTLVPPALVEELSGSLQQCHHAPLHFL--PEVQLQVFFTVRQ 187
A+ LP V+ VPP L L+ + Q A L L P+ LQ V
Sbjct: 734 LAQPTPLPQVLAPQPVVPLQPVPPHLPPYLAPASQVGAPAQLKPLQMPQAPLQPLAQVPP 793
Query: 188 ERP 190
+ P
Sbjct: 794 QMP 796
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 27.7 bits (60), Expect = 6.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 28 PLQPLEALGQLQRTSPAPGYPV 49
P+QPL + GQL+ TS G PV
Sbjct: 1125 PMQPLVSQGQLRHTSQGMGIPV 1146
>gi|94536800 empty spiracles homolog 1 [Homo sapiens]
Length = 290
Score = 27.3 bits (59), Expect = 8.4
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 16/71 (22%)
Query: 15 LQHPS----PFHSILSGPLQPLEALGQLQRTSPAPGYPVWLLWEGATGRPLSREVCLEDG 70
+ HP+ P H + + PLQP + Q P YP W+L G
Sbjct: 123 MNHPALTVHPAHQLGASPLQPPHSFFGAQHRDPLHFYP-WVLRNRFFGHRFQ-------- 173
Query: 71 SDFKKDVPQDG 81
DVPQDG
Sbjct: 174 ---ASDVPQDG 181
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,225,101
Number of Sequences: 37866
Number of extensions: 478203
Number of successful extensions: 1079
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 23
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.