Search of human proteins with 239753045

Search of human proteins with 239753045

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753045 PREDICTED: hypothetical protein XP_002345328 [Homo
sapiens]
         (76 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753045 PREDICTED: hypothetical protein XP_002345328 [Homo ...   150   2e-37
gi|239747593 PREDICTED: hypothetical protein [Homo sapiens]           150   2e-37
gi|239741458 PREDICTED: hypothetical protein XP_002342224 [Homo ...   150   2e-37
gi|191252812 target of myb1-like 1 [Homo sapiens]                      28   1.6  
gi|101943240 general transcription factor IIIC, polypeptide 1, a...    28   1.6  

>gi|239753045 PREDICTED: hypothetical protein XP_002345328 [Homo
          sapiens]
          Length = 76

 Score =  150 bits (379), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MGLVFRLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRETLSWVRSAGSK 60
          MGLVFRLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRETLSWVRSAGSK
Sbjct: 1  MGLVFRLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRETLSWVRSAGSK 60

Query: 61 DILATPLVESFPVKAL 76
          DILATPLVESFPVKAL
Sbjct: 61 DILATPLVESFPVKAL 76


>gi|239747593 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 76

 Score =  150 bits (379), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MGLVFRLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRETLSWVRSAGSK 60
          MGLVFRLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRETLSWVRSAGSK
Sbjct: 1  MGLVFRLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRETLSWVRSAGSK 60

Query: 61 DILATPLVESFPVKAL 76
          DILATPLVESFPVKAL
Sbjct: 61 DILATPLVESFPVKAL 76


>gi|239741458 PREDICTED: hypothetical protein XP_002342224 [Homo
          sapiens]
          Length = 76

 Score =  150 bits (379), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MGLVFRLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRETLSWVRSAGSK 60
          MGLVFRLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRETLSWVRSAGSK
Sbjct: 1  MGLVFRLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRETLSWVRSAGSK 60

Query: 61 DILATPLVESFPVKAL 76
          DILATPLVESFPVKAL
Sbjct: 61 DILATPLVESFPVKAL 76


>gi|191252812 target of myb1-like 1 [Homo sapiens]
          Length = 476

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 8/44 (18%)

Query: 6   RLEVQVRAAILIENSPGSVADDGVFGFVHFGEDLIQGLQFLGRE 49
           ++ V+V +AIL+EN+PGS   + +        +L+Q L   GRE
Sbjct: 213 KMNVRVMSAILMENTPGSENHEDI--------ELLQKLYKTGRE 248


>gi|101943240 general transcription factor IIIC, polypeptide 1, alpha
            220kDa [Homo sapiens]
          Length = 2109

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 38   DLIQGLQFLGRETLSWVRSAGSKDILATPLVESFPV 73
            +L+QGL+ LG     W+R      + +TP+VE   V
Sbjct: 2036 ELLQGLESLGCIRKRWLRKPRPVSLFSTPVVEEVEV 2071


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,604,764
Number of Sequences: 37866
Number of extensions: 82106
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 5
length of query: 76
length of database: 18,247,518
effective HSP length: 48
effective length of query: 28
effective length of database: 16,429,950
effective search space: 460038600
effective search space used: 460038600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.