Search of human proteins with 239752626

Search of human proteins with 239752626

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752626 PREDICTED: hypothetical protein XP_002347872 [Homo
sapiens]
         (43 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752626 PREDICTED: hypothetical protein XP_002347872 [Homo ...    86   6e-18
gi|122937271 WAS protein homolog associated with actin, golgi me...    79   1e-15
gi|195947369 junction-mediating and regulatory protein [Homo sap...    51   2e-07
gi|54112401 calmodulin-binding transcription activator 1 [Homo s...    26   7.9  

>gi|239752626 PREDICTED: hypothetical protein XP_002347872 [Homo
          sapiens]
          Length = 43

 Score = 85.9 bits (211), Expect = 6e-18
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MVALMKVYQEEDEAYQELVTVATTFFQYLLRPFRAMREVATLS 43
          MVALMKVYQEEDEAYQELVTVATTFFQYLLRPFRAMREVATLS
Sbjct: 1  MVALMKVYQEEDEAYQELVTVATTFFQYLLRPFRAMREVATLS 43


>gi|122937271 WAS protein homolog associated with actin, golgi
           membranes and microtubules [Homo sapiens]
          Length = 809

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 39/42 (92%), Positives = 40/42 (95%)

Query: 1   MVALMKVYQEEDEAYQELVTVATTFFQYLLRPFRAMREVATL 42
           MVALM VYQEEDEAYQELVTVAT FFQYLL+PFRAMREVATL
Sbjct: 214 MVALMNVYQEEDEAYQELVTVATMFFQYLLQPFRAMREVATL 255


>gi|195947369 junction-mediating and regulatory protein [Homo
           sapiens]
          Length = 988

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 24/42 (57%), Positives = 29/42 (69%)

Query: 1   MVALMKVYQEEDEAYQELVTVATTFFQYLLRPFRAMREVATL 42
           MV L+ +YQ EDEAY  L    T  +QYLL+PFR MRE+A L
Sbjct: 355 MVELLDLYQLEDEAYSSLAEATTELYQYLLQPFRDMRELAML 396


>gi|54112401 calmodulin-binding transcription activator 1 [Homo
            sapiens]
          Length = 1673

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 10   EEDEAYQELVTVATTFFQYLLRPFRAMREVA 40
            E+ E Y+    V T F +Y  RP R  +EVA
Sbjct: 1520 EQRELYEAARLVQTAFRKYKGRPLREQQEVA 1550


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.133    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,153,289
Number of Sequences: 37866
Number of extensions: 21483
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 4
length of query: 43
length of database: 18,247,518
effective HSP length: 17
effective length of query: 26
effective length of database: 17,603,796
effective search space: 457698696
effective search space used: 457698696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.