Search of human proteins with 239752256

Search of human proteins with 239752256

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752256 PREDICTED: hypothetical protein XP_002348182 [Homo
sapiens]
         (67 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752256 PREDICTED: hypothetical protein XP_002348182 [Homo ...   138   1e-33
gi|239746767 PREDICTED: hypothetical protein [Homo sapiens]           124   1e-29
gi|145275213 coagulation factor XII precursor [Homo sapiens]           26   7.8  

>gi|239752256 PREDICTED: hypothetical protein XP_002348182 [Homo
          sapiens]
          Length = 67

 Score =  138 bits (347), Expect = 1e-33
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MLSKVALPFVRLSRCKRPHSHGFTMIWVSIILQSNTLHSLQTPAGNSKVACAVAGDLFTL 60
          MLSKVALPFVRLSRCKRPHSHGFTMIWVSIILQSNTLHSLQTPAGNSKVACAVAGDLFTL
Sbjct: 1  MLSKVALPFVRLSRCKRPHSHGFTMIWVSIILQSNTLHSLQTPAGNSKVACAVAGDLFTL 60

Query: 61 LFPLIPM 67
          LFPLIPM
Sbjct: 61 LFPLIPM 67


>gi|239746767 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score =  124 bits (312), Expect = 1e-29
 Identities = 60/67 (89%), Positives = 63/67 (94%)

Query: 1   MLSKVALPFVRLSRCKRPHSHGFTMIWVSIILQSNTLHSLQTPAGNSKVACAVAGDLFTL 60
           +L+  A+  VRLSRCKRPHSHGFTMIWVSIILQSNTLHSLQTPAGNSKVACAVAGDLFTL
Sbjct: 189 LLADAAITEVRLSRCKRPHSHGFTMIWVSIILQSNTLHSLQTPAGNSKVACAVAGDLFTL 248

Query: 61  LFPLIPM 67
           LFPLIPM
Sbjct: 249 LFPLIPM 255


>gi|145275213 coagulation factor XII precursor [Homo sapiens]
          Length = 615

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 2   LSKVALPFVRLSRCKRPHSHGFTMI 26
           L +  +PF+ L RC  P  HG +++
Sbjct: 519 LQEAQVPFLSLERCSAPDVHGSSIL 543


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,492,173
Number of Sequences: 37866
Number of extensions: 73518
Number of successful extensions: 178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 3
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.