Search of human proteins with 10835095

Search of human proteins with 10835095

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10835095 serum amyloid A4, constitutive [Homo sapiens]
         (130 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10835095 serum amyloid A4, constitutive [Homo sapiens]             272   5e-74
gi|40316912 serum amyloid A1 preproprotein [Homo sapiens]             141   2e-34
gi|40316910 serum amyloid A1 preproprotein [Homo sapiens]             141   2e-34
gi|188497671 serum amyloid A2 isoform a [Homo sapiens]                135   7e-33
gi|188497687 serum amyloid A2 isoform b [Homo sapiens]                 96   6e-21
gi|84000432 hypothetical protein LOC157769 [Homo sapiens]              30   0.54 
gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens]     28   1.6  
gi|4758808 RAS protein activator like 2 isoform 1 [Homo sapiens]       28   1.6  
gi|223278368 neuralized-like [Homo sapiens]                            26   7.8  

>gi|10835095 serum amyloid A4, constitutive [Homo sapiens]
          Length = 130

 Score =  272 bits (696), Expect = 5e-74
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60
           MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY
Sbjct: 1   MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60

Query: 61  DAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 120
           DAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR
Sbjct: 61  DAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 120

Query: 121 FRPDGLPKKY 130
           FRPDGLPKKY
Sbjct: 121 FRPDGLPKKY 130


>gi|40316912 serum amyloid A1 preproprotein [Homo sapiens]
          Length = 122

 Score =  141 bits (355), Expect = 2e-34
 Identities = 71/130 (54%), Positives = 94/130 (72%), Gaps = 8/130 (6%)

Query: 1   MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60
           M+L TG+VFCSLV+GV+S S+ SF  EA  G  DM RAY D+  +N+  S++Y +ARGNY
Sbjct: 1   MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61  DAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 120
           DAA+RGPGG WAA++IS +R  +Q       FG+ +   EDS +++ A EWGRSGKDP+ 
Sbjct: 61  DAAKRGPGGAWAAEVISDARENIQ-----RFFGHGA---EDSLADQAANEWGRSGKDPNH 112

Query: 121 FRPDGLPKKY 130
           FRP GLP+KY
Sbjct: 113 FRPAGLPEKY 122


>gi|40316910 serum amyloid A1 preproprotein [Homo sapiens]
          Length = 122

 Score =  141 bits (355), Expect = 2e-34
 Identities = 71/130 (54%), Positives = 94/130 (72%), Gaps = 8/130 (6%)

Query: 1   MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60
           M+L TG+VFCSLV+GV+S S+ SF  EA  G  DM RAY D+  +N+  S++Y +ARGNY
Sbjct: 1   MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61  DAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 120
           DAA+RGPGG WAA++IS +R  +Q       FG+ +   EDS +++ A EWGRSGKDP+ 
Sbjct: 61  DAAKRGPGGAWAAEVISDARENIQ-----RFFGHGA---EDSLADQAANEWGRSGKDPNH 112

Query: 121 FRPDGLPKKY 130
           FRP GLP+KY
Sbjct: 113 FRPAGLPEKY 122


>gi|188497671 serum amyloid A2 isoform a [Homo sapiens]
          Length = 122

 Score =  135 bits (341), Expect = 7e-33
 Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 8/130 (6%)

Query: 1   MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60
           M+L TG+VFCSLV+ V+S S+ SF  EA  G  DM RAY D+  +N+  S++Y +ARGNY
Sbjct: 1   MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61  DAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 120
           DAA+RGPGG WAA++IS +R  +Q L        +    EDS +++ A +WGRSG+DP+ 
Sbjct: 61  DAAKRGPGGAWAAEVISNARENIQRL--------TGRGAEDSLADQAANKWGRSGRDPNH 112

Query: 121 FRPDGLPKKY 130
           FRP GLP+KY
Sbjct: 113 FRPAGLPEKY 122


>gi|188497687 serum amyloid A2 isoform b [Homo sapiens]
          Length = 83

 Score = 96.3 bits (238), Expect = 6e-21
 Identities = 45/77 (58%), Positives = 59/77 (76%)

Query: 1  MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60
          M+L TG+VFCSLV+ V+S S+ SF  EA  G  DM RAY D+  +N+  S++Y +ARGNY
Sbjct: 1  MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60

Query: 61 DAAQRGPGGVWAAKLIS 77
          DAA+RGPGG WAA++IS
Sbjct: 61 DAAKRGPGGAWAAEVIS 77


>gi|84000432 hypothetical protein LOC157769 [Homo sapiens]
          Length = 838

 Score = 30.0 bits (66), Expect = 0.54
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 69  GVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGR----SGKD 117
           GV  A  I R+RV LQ L  Y    N+S+ L D K ++ ++E G     SG D
Sbjct: 635 GVHKALQILRNRVDLQHLCGYVTMLNASSQLADRKLSDASDERGEPDLASGSD 687


>gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens]
          Length = 1280

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 88   DYYLFGNSSTVLED-SKSNEKAEEWGRSGKDPDRFRPDGLPKK 129
            D+ L G S++ +ED +K + ++E++ R    PDR  P  LP++
Sbjct: 961  DFKLSGPSNSSMEDFTKRSTQSEDFSRRHTVPDRHIPLALPRQ 1003


>gi|4758808 RAS protein activator like 2 isoform 1 [Homo sapiens]
          Length = 1139

 Score = 28.5 bits (62), Expect = 1.6
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 88  DYYLFGNSSTVLED-SKSNEKAEEWGRSGKDPDRFRPDGLPKK 129
           D+ L G S++ +ED +K + ++E++ R    PDR  P  LP++
Sbjct: 820 DFKLSGPSNSSMEDFTKRSTQSEDFSRRHTVPDRHIPLALPRQ 862


>gi|223278368 neuralized-like [Homo sapiens]
          Length = 574

 Score = 26.2 bits (56), Expect = 7.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 112 GRSGKDPDRFRPDGLPK 128
           G + KDP R  PD LPK
Sbjct: 124 GFTSKDPSRIHPDSLPK 140


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,062,898
Number of Sequences: 37866
Number of extensions: 190145
Number of successful extensions: 483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 9
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.