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Search of human proteins with 239748904
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748904 PREDICTED: hypothetical protein XP_002346851 [Homo
sapiens]
(95 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754357 PREDICTED: hypothetical protein [Homo sapiens] 199 5e-52
gi|239748904 PREDICTED: hypothetical protein XP_002346851 [Homo ... 199 5e-52
gi|239742928 PREDICTED: hypothetical protein XP_002342688 [Homo ... 199 5e-52
gi|171543895 ataxin 2 [Homo sapiens] 30 0.42
gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens] 29 0.71
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 28 1.2
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 28 1.2
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 28 1.2
gi|19718780 semaphorin 6B precursor [Homo sapiens] 27 3.5
gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a ... 27 4.6
gi|44890068 zinc finger protein 262 [Homo sapiens] 27 4.6
gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens] 26 7.8
gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive ... 26 7.8
gi|239748061 PREDICTED: hypothetical protein XP_002346523 [Homo ... 26 7.8
gi|239741954 PREDICTED: hypothetical protein XP_002342361 [Homo ... 26 7.8
gi|156139122 CXXC finger 6 [Homo sapiens] 26 7.8
>gi|239754357 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 199 bits (505), Expect = 5e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MDNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLLPVSGAS 60
MDNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLLPVSGAS
Sbjct: 1 MDNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLLPVSGAS 60
Query: 61 GAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA 95
GAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA
Sbjct: 61 GAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA 95
>gi|239748904 PREDICTED: hypothetical protein XP_002346851 [Homo
sapiens]
Length = 95
Score = 199 bits (505), Expect = 5e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MDNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLLPVSGAS 60
MDNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLLPVSGAS
Sbjct: 1 MDNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLLPVSGAS 60
Query: 61 GAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA 95
GAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA
Sbjct: 61 GAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA 95
>gi|239742928 PREDICTED: hypothetical protein XP_002342688 [Homo
sapiens]
Length = 95
Score = 199 bits (505), Expect = 5e-52
Identities = 95/95 (100%), Positives = 95/95 (100%)
Query: 1 MDNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLLPVSGAS 60
MDNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLLPVSGAS
Sbjct: 1 MDNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLLPVSGAS 60
Query: 61 GAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA 95
GAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA
Sbjct: 61 GAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA 95
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 24/94 (25%)
Query: 25 SRDLRYLPVGLRRRNPVRW-------------------YRVAGNACSLLPVSGASGAVVK 65
+R+ +Y+P G R R + W R + P SG+ VV
Sbjct: 488 TRENKYIPPGQRNREVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVN 547
Query: 66 ----W-RPKLTPLAANPIQFHSPPSALPVRARAP 94
W P +P + P ++ S P++LP RA P
Sbjct: 548 GGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATP 581
>gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens]
Length = 431
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 51 CSLLPVSGASGAVVKWRPKLTPLAANPIQFHSPP 84
CS + + GA + W PKL PL+ P++ +SPP
Sbjct: 27 CSTVSLLIHQGAQLSWYPKLFPLSCPPLR-NSPP 59
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 54 LPVSGASGAVVKWRPKLTPLAANPIQFHSP----PSALPVRARAPA 95
LP + A+ A WR + PL P +F SP P P R R PA
Sbjct: 219 LPTAAAAAADALWRSRRAPLP--PTEFLSPRRTRPRKHPERTRRPA 262
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 54 LPVSGASGAVVKWRPKLTPLAANPIQFHSP----PSALPVRARAPA 95
LP + A+ A WR + PL P +F SP P P R R PA
Sbjct: 219 LPTAAAAAADALWRSRRAPLP--PTEFLSPRRTRPRKHPERTRRPA 262
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 54 LPVSGASGAVVKWRPKLTPLAANPIQFHSP----PSALPVRARAPA 95
LP + A+ A WR + PL P +F SP P P R R PA
Sbjct: 219 LPTAAAAAADALWRSRRAPLP--PTEFLSPRRTRPRKHPERTRRPA 262
>gi|19718780 semaphorin 6B precursor [Homo sapiens]
Length = 888
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 39 NPVRWYRVAGNACSLLPVSGASGAVVKWRPKLTPLAANPIQFHSPPSA 86
+P R V+ L P S A G W P T P+ H+PP+A
Sbjct: 794 SPDRRRVVSAPTGPLDPASAADGLPRPWSPPPTGSLRRPLGPHAPPAA 841
>gi|56550057 CCR4-NOT transcription complex, subunit 4 isoform a
[Homo sapiens]
Length = 639
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 66 WRPKLTPLAANPIQFHSPPSALPVRARAPA 95
W P P +NP FHSPP R P+
Sbjct: 597 WNPYPPP--SNPSSFHSPPPGFQTAFRPPS 624
>gi|44890068 zinc finger protein 262 [Homo sapiens]
Length = 1548
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 49 NACSLLPVSGASGAVVKWRPKLTPLAANPIQFHSPPSALP 88
NA ++ V AS R TP+ AN + S P+A P
Sbjct: 861 NAANISMVQAASAGPPSLRKDSTPVIANVVSLASAPAAQP 900
>gi|57242796 jumonji, AT rich interactive domain 1B [Homo sapiens]
Length = 1544
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 2 DNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLL 54
D C + L+ + + FC H+ Y L P WY V G A L
Sbjct: 478 DICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQL 530
>gi|169218173 PREDICTED: similar to Jumonji, AT rich interactive
domain 1B (RBP2-like), partial [Homo sapiens]
Length = 977
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/53 (28%), Positives = 20/53 (37%)
Query: 2 DNCRSSIHGLFSTISINMFCSHVSRDLRYLPVGLRRRNPVRWYRVAGNACSLL 54
D C + L+ + + FC H+ Y L P WY V G A L
Sbjct: 478 DICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQL 530
>gi|239748061 PREDICTED: hypothetical protein XP_002346523 [Homo
sapiens]
Length = 182
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 54 LPVSGASGAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA 95
L A + + RP L+P A P P SA+P R + PA
Sbjct: 83 LKSGSAPASTARGRPPLSPQAETP---EEPHSAVPNRRQLPA 121
>gi|239741954 PREDICTED: hypothetical protein XP_002342361 [Homo
sapiens]
Length = 152
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 54 LPVSGASGAVVKWRPKLTPLAANPIQFHSPPSALPVRARAPA 95
L A + + RP L+P A P P SA+P R + PA
Sbjct: 53 LKSGSAPASTARGRPPLSPQAETP---EEPHSAVPNRRQLPA 91
>gi|156139122 CXXC finger 6 [Homo sapiens]
Length = 2136
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 58 GASGAVVKWRPKLTPLAANPIQFHSPPSALP 88
G SG+VV P P+ NPI + PS P
Sbjct: 420 GMSGSVVPDLPVFLPVPPNPIATFNAPSKWP 450
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,909,687
Number of Sequences: 37866
Number of extensions: 158507
Number of successful extensions: 533
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 16
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.