Search of human proteins with 239747504

Search of human proteins with 239747504

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747504 PREDICTED: hypothetical protein XP_002347657 [Homo
sapiens]
         (80 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752959 PREDICTED: similar to cytochrome c oxidase subunit ...   167   2e-42
gi|239747504 PREDICTED: hypothetical protein XP_002347657 [Homo ...   167   2e-42
gi|239741382 PREDICTED: hypothetical protein XP_002342160 [Homo ...   167   2e-42
gi|4502991 cytochrome c oxidase subunit VIIb precursor [Homo sap...   117   2e-27
gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit ...   115   8e-27
gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit ...   115   8e-27
gi|115527068 cytochrome c oxidase subunit VIIb2 [Homo sapiens]        101   1e-22
gi|19913410 major vault protein [Homo sapiens]                         28   1.6  
gi|19913412 major vault protein [Homo sapiens]                         28   1.6  
gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide...    27   4.6  

>gi|239752959 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  167 bits (423), Expect = 2e-42
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60
          MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 61 TIKGNLSTVGRVTLKKWRDQ 80
          TIKGNLSTVGRVTLKKWRDQ
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|239747504 PREDICTED: hypothetical protein XP_002347657 [Homo
          sapiens]
          Length = 80

 Score =  167 bits (423), Expect = 2e-42
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60
          MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 61 TIKGNLSTVGRVTLKKWRDQ 80
          TIKGNLSTVGRVTLKKWRDQ
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|239741382 PREDICTED: hypothetical protein XP_002342160 [Homo
          sapiens]
          Length = 80

 Score =  167 bits (423), Expect = 2e-42
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60
          MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 61 TIKGNLSTVGRVTLKKWRDQ 80
          TIKGNLSTVGRVTLKKWRDQ
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|4502991 cytochrome c oxidase subunit VIIb precursor [Homo
          sapiens]
          Length = 80

 Score =  117 bits (293), Expect = 2e-27
 Identities = 58/80 (72%), Positives = 65/80 (81%)

Query: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60
          MFPLVK++L+ L V SI QTMARQSHQKR  DFHDK GNAVLASG T CI  WTYVATQ+
Sbjct: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60

Query: 61 TIKGNLSTVGRVTLKKWRDQ 80
           I+ NLS VGRVT K+WR+Q
Sbjct: 61 GIEWNLSPVGRVTPKEWRNQ 80


>gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  115 bits (288), Expect = 8e-27
 Identities = 59/80 (73%), Positives = 64/80 (80%)

Query: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60
          MFPLV+N+LSHL V SI QT+ARQSHQK   DFHDK  NAVLASG T  IAVWTYVATQI
Sbjct: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60

Query: 61 TIKGNLSTVGRVTLKKWRDQ 80
           I+ NLS  GRVT K+WRDQ
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80


>gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  115 bits (288), Expect = 8e-27
 Identities = 59/80 (73%), Positives = 64/80 (80%)

Query: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60
          MFPLV+N+LSHL V SI QT+ARQSHQK   DFHDK  NAVLASG T  IAVWTYVATQI
Sbjct: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60

Query: 61 TIKGNLSTVGRVTLKKWRDQ 80
           I+ NLS  GRVT K+WRDQ
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80


>gi|115527068 cytochrome c oxidase subunit VIIb2 [Homo sapiens]
          Length = 81

 Score =  101 bits (252), Expect = 1e-22
 Identities = 49/80 (61%), Positives = 58/80 (72%)

Query: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60
          MFPL +N+LS L + SI Q+MAR SH K   DFHDK GNAVLASG   C+A W + ATQI
Sbjct: 2  MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61

Query: 61 TIKGNLSTVGRVTLKKWRDQ 80
           I+ NLS VGRVT K+W+ Q
Sbjct: 62 GIEWNLSPVGRVTPKEWKHQ 81


>gi|19913410 major vault protein [Homo sapiens]
          Length = 893

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 26  HQKRISDFHDKDGNAVLASGDTICIAVWTYV 56
           H K + DF DKDG+ V+A  + +     TY+
Sbjct: 122 HLKALLDFEDKDGDKVVAGDEWLFEGPGTYI 152


>gi|19913412 major vault protein [Homo sapiens]
          Length = 893

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 26  HQKRISDFHDKDGNAVLASGDTICIAVWTYV 56
           H K + DF DKDG+ V+A  + +     TY+
Sbjct: 122 HLKALLDFEDKDGDKVVAGDEWLFEGPGTYI 152


>gi|194097347 phosphoinositide-3-kinase, class 2 beta polypeptide
           [Homo sapiens]
          Length = 1634

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 3   PLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGD 46
           P   N L HL    + QT++RQ+       +H++    +LA GD
Sbjct: 481 PSTLNYLVHLQERPVKQTISRQALSLLFDTYHNEVDAFLLADGD 524


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.131    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,917,433
Number of Sequences: 37866
Number of extensions: 88469
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 10
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.