Search of human proteins with 239747264

Search of human proteins with 239747264

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747264 PREDICTED: hypothetical protein LOC100287517 [Homo
sapiens]
         (148 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747264 PREDICTED: hypothetical protein LOC100287517 [Homo ...   290   3e-79
gi|4507231 single-stranded DNA binding protein 1 [Homo sapiens]       201   2e-52
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]         30   0.96 
gi|31317252 ankyrin repeat and FYVE domain containing 1 isoform ...    27   4.8  
gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform...    27   4.8  

>gi|239747264 PREDICTED: hypothetical protein LOC100287517 [Homo
           sapiens]
          Length = 148

 Score =  290 bits (742), Expect = 3e-79
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MFQRPVLQVLHQFVRHESKTASSLVLERSLNCMQLLGQVGXDLIMRQMEGNTPXTIFSLA 60
           MFQRPVLQVLHQFVRHESKTASSLVLERSLNCMQLLGQVG DLIMRQMEGNTP TIFSLA
Sbjct: 1   MFQRPVLQVLHQFVRHESKTASSLVLERSLNCMQLLGQVGXDLIMRQMEGNTPXTIFSLA 60

Query: 61  TNEMWXSGDRKVYQMGDVCXKMTWHRISAFXPGPGDVAHQSRIYAEEKVDYGEYTDKNNG 120
           TNEMW SGDRKVYQMGDVC KMTWHRISAF PGPGDVAHQSRIYAEEKVDYGEYTDKNNG
Sbjct: 61  TNEMWXSGDRKVYQMGDVCXKMTWHRISAFXPGPGDVAHQSRIYAEEKVDYGEYTDKNNG 120

Query: 121 RRQATTIIFPAMIADSRIFLSDQTKEKA 148
           RRQATTIIFPAMIADSRIFLSDQTKEKA
Sbjct: 121 RRQATTIIFPAMIADSRIFLSDQTKEKA 148


>gi|4507231 single-stranded DNA binding protein 1 [Homo sapiens]
          Length = 148

 Score =  201 bits (510), Expect = 2e-52
 Identities = 106/152 (69%), Positives = 119/152 (78%), Gaps = 10/152 (6%)

Query: 1   MFQRPVLQVLHQFVRHESKTASSLVLERSLNCMQLLGQVGXDLIMRQMEGNTPXTIFSLA 60
           MF+RPVLQVL QFVRHES+T +SLVLERSLN + LLG+VG D ++RQ+EG  P TIFSLA
Sbjct: 1   MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLA 60

Query: 61  TNEMWXSGDRKVYQMGDVCXKMTWHRISAFXPGPGDVAHQ-----SRIYAEEKVDYGEYT 115
           TNEMW SGD +VYQ+GDV  K TWHRIS F PG  DVA+Q     SRIY E K+DYGEY 
Sbjct: 61  TNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYM 120

Query: 116 DKNNGRRQATTIIFPAMIADSRIFLSDQTKEK 147
           DKNN RRQATTI     IAD+ IFLSDQTKEK
Sbjct: 121 DKNNVRRQATTI-----IADNIIFLSDQTKEK 147


>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
          Length = 3639

 Score = 29.6 bits (65), Expect = 0.96
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 3    QRPVLQVLHQFVRHESKTASSLVLERSLNCMQLLGQVGXDLIMRQMEGNTPXTIFSLATN 62
            +R +LQ L    RHE+  +  L   R +  +Q   QVG +L+ R+  G            
Sbjct: 1310 RRNILQTLK---RHEAAESELLATRRHVEALQ---QVGRELLSRRPCGQEDIQTRLQGLR 1363

Query: 63   EMWXSGDRKVYQMGD 77
              W + +RK+ + GD
Sbjct: 1364 SKWEALNRKMTERGD 1378


>gi|31317252 ankyrin repeat and FYVE domain containing 1 isoform 2
           [Homo sapiens]
          Length = 487

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 10  LHQFVRHESKTASSLVLERSLNCMQLLGQVGXDLIMRQMEGNTPXTIFSLATNE 63
           LH    + SK  S+ V+       + L Q G +  M+  +G TP  +  +A NE
Sbjct: 327 LHLVALYSSKKHSADVMSEMAQIAEALLQAGANPNMQDSKGRTPLHVSIMAGNE 380


>gi|110815813 ankyrin repeat and FYVE domain containing 1 isoform 1
           [Homo sapiens]
          Length = 1170

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 10  LHQFVRHESKTASSLVLERSLNCMQLLGQVGXDLIMRQMEGNTPXTIFSLATNE 63
           LH    + SK  S+ V+       + L Q G +  M+  +G TP  +  +A NE
Sbjct: 327 LHLVALYSSKKHSADVMSEMAQIAEALLQAGANPNMQDSKGRTPLHVSIMAGNE 380


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,169,241
Number of Sequences: 37866
Number of extensions: 191883
Number of successful extensions: 249
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 5
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.