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Search of human proteins with 239743760
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo
sapiens]
(75 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169174738 PREDICTED: hypothetical protein [Homo sapiens] 159 5e-40
gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo ... 159 5e-40
gi|239747784 PREDICTED: hypothetical protein [Homo sapiens] 144 1e-35
gi|169163288 PREDICTED: hypothetical protein [Homo sapiens] 144 1e-35
gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo ... 129 4e-31
gi|169178848 PREDICTED: hypothetical protein [Homo sapiens] 129 4e-31
gi|169215257 PREDICTED: hypothetical protein [Homo sapiens] 127 3e-30
gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo ... 127 3e-30
gi|239752891 PREDICTED: hypothetical protein [Homo sapiens] 126 3e-30
gi|169161055 PREDICTED: hypothetical protein [Homo sapiens] 126 3e-30
gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo ... 125 1e-29
gi|169161052 PREDICTED: hypothetical protein [Homo sapiens] 124 2e-29
gi|169161059 PREDICTED: hypothetical protein [Homo sapiens] 119 4e-28
gi|122937472 bicaudal C homolog 1 [Homo sapiens] 29 0.72
gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F... 27 4.6
gi|18201900 T-box 6 [Homo sapiens] 27 4.6
gi|5453638 AT rich interactive domain 3B [Homo sapiens] 26 6.1
>gi|169174738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 159 bits (402), Expect = 5e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQGDSTDKPPA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo
sapiens]
Length = 75
Score = 159 bits (402), Expect = 5e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQGDSTDKPPA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239747784 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 144 bits (364), Expect = 1e-35
Identities = 69/75 (92%), Positives = 70/75 (93%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQ EEGHQAQQRGLAPPLG TQVMCKVVG PS AGF+TSSHLLFPATLQGALTHL
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGDSTDKPPA 75
CRWRQGDSTDKPPA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|169163288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 144 bits (364), Expect = 1e-35
Identities = 69/75 (92%), Positives = 70/75 (93%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQ EEGHQAQQRGLAPPLG TQVMCKVVG PS AGF+TSSHLLFPATLQGALTHL
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGDSTDKPPA 75
CRWRQGDSTDKPPA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo
sapiens]
Length = 75
Score = 129 bits (325), Expect = 4e-31
Identities = 63/75 (84%), Positives = 64/75 (85%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQ ALTHL
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQG STDKPPA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169178848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 129 bits (325), Expect = 4e-31
Identities = 63/75 (84%), Positives = 64/75 (85%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQ ALTHL
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQG STDKPPA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169215257 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 127 bits (318), Expect = 3e-30
Identities = 61/75 (81%), Positives = 62/75 (82%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo
sapiens]
Length = 75
Score = 127 bits (318), Expect = 3e-30
Identities = 61/75 (81%), Positives = 62/75 (82%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239752891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 126 bits (317), Expect = 3e-30
Identities = 61/75 (81%), Positives = 62/75 (82%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|169161055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 126 bits (317), Expect = 3e-30
Identities = 61/75 (81%), Positives = 62/75 (82%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo
sapiens]
Length = 375
Score = 125 bits (313), Expect = 1e-29
Identities = 61/74 (82%), Positives = 65/74 (87%)
Query: 2 VVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHLP 61
VVLGMQ EEG +A+QRGLAP LG TQV+CKV GLPS A FNTSSH+LFP TLQGALTHLP
Sbjct: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
Query: 62 CRWRQGDSTDKPPA 75
RWRQGDSTDKPPA
Sbjct: 362 YRWRQGDSTDKPPA 375
>gi|169161052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 124 bits (311), Expect = 2e-29
Identities = 59/75 (78%), Positives = 62/75 (82%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGM+ EEGH RGLAP LG TQV+CKV+GLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|169161059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 119 bits (299), Expect = 4e-28
Identities = 59/75 (78%), Positives = 60/75 (80%)
Query: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
MVVLGMQ EEGH RGLA LG TQV+CKVVGLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGDSTDKPPA 75
PCRWRQG STD PA
Sbjct: 61 PCRWRQGGSTDNLPA 75
>gi|122937472 bicaudal C homolog 1 [Homo sapiens]
Length = 974
Score = 29.3 bits (64), Expect = 0.72
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 20 APPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
APPL T S GF+ HL+ P+T Q LT++
Sbjct: 499 APPLANTS---------SATGFSAIPHLMIPSTAQATLTNI 530
>gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F
subunit [Homo sapiens]
Length = 1977
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 4 LGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHLPCR 63
LG EEG + LA R + + + + +TSSH PA+ G++T
Sbjct: 425 LGSMAEEGRAGHRPQLAELTNRRRGRLRWFSHSTRSTHSTSSHASLPASDTGSMTE---- 480
Query: 64 WRQGDSTDKPPA 75
QGD ++ A
Sbjct: 481 -TQGDEDEEEGA 491
>gi|18201900 T-box 6 [Homo sapiens]
Length = 436
Score = 26.6 bits (57), Expect = 4.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 36 PSGAGFNTSSHLLFPATLQGALTHLPCR 63
P G + ++LL PA GA +HLP R
Sbjct: 339 PLCGGPSAEAYLLHPAAFHGAPSHLPTR 366
>gi|5453638 AT rich interactive domain 3B [Homo sapiens]
Length = 560
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 19 LAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPAT 52
L+PP ++ ++GL S +G NTSS + PAT
Sbjct: 355 LSPP----KIRFPILGLGSSSGTNTSSPRISPAT 384
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,539,649
Number of Sequences: 37866
Number of extensions: 143545
Number of successful extensions: 256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 17
length of query: 75
length of database: 18,247,518
effective HSP length: 47
effective length of query: 28
effective length of database: 16,467,816
effective search space: 461098848
effective search space used: 461098848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.