Search of human proteins with 239742494

Search of human proteins with 239742494

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]
         (147 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]          287   2e-78
gi|169167761 PREDICTED: similar to HIStone family member (his-72...   257   3e-69
gi|88987392 PREDICTED: similar to HIStone family member (his-72)...   257   3e-69
gi|41147170 PREDICTED: similar to HIStone family member (his-72)...   257   3e-69
gi|4885385 H3 histone, family 3B [Homo sapiens]                       222   1e-58
gi|4504279 H3 histone, family 3A [Homo sapiens]                       222   1e-58
gi|53793688 histone cluster 2, H3a [Homo sapiens]                     217   3e-57
gi|31742503 histone cluster 2, H3c [Homo sapiens]                     217   3e-57
gi|183076548 histone cluster 2, H3d [Homo sapiens]                    217   3e-57
gi|4504287 histone cluster 1, H3e [Homo sapiens]                      215   1e-56
gi|4504295 histone cluster 1, H3h [Homo sapiens]                      215   1e-56
gi|4504289 histone cluster 1, H3i [Homo sapiens]                      215   1e-56
gi|4504281 histone cluster 1, H3a [Homo sapiens]                      215   1e-56
gi|10440560 histone cluster 1, H3f [Homo sapiens]                     215   1e-56
gi|21071021 histone cluster 1, H3d [Homo sapiens]                     215   1e-56
gi|4504297 histone cluster 1, H3b [Homo sapiens]                      215   1e-56
gi|4504293 histone cluster 1, H3j [Homo sapiens]                      215   1e-56
gi|4504285 histone cluster 1, H3c [Homo sapiens]                      215   1e-56
gi|4504291 H3 histone family, member H [Homo sapiens]                 215   1e-56
gi|4504299 histone cluster 3, H3 [Homo sapiens]                       209   5e-55
gi|188528667 histone H3-like [Homo sapiens]                           208   1e-54
gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens]          197   2e-51
gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens]          197   2e-51
gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens]       181   3e-46
gi|4502775 centromere protein A isoform a [Homo sapiens]              104   3e-23
gi|109637779 centromere protein A isoform b [Homo sapiens]             80   8e-16
gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]    37   0.008
gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]    37   0.008
gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]    34   0.038
gi|126722969 centromere protein T [Homo sapiens]                       32   0.19 

>gi|239742494 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 147

 Score =  287 bits (735), Expect = 2e-78
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI
Sbjct: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120

Query: 121 MPRDMQLARRLRGEGAGEPTLLGNLAL 147
           MPRDMQLARRLRGEGAGEPTLLGNLAL
Sbjct: 121 MPRDMQLARRLRGEGAGEPTLLGNLAL 147


>gi|169167761 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score =  257 bits (656), Expect = 3e-69
 Identities = 132/135 (97%), Positives = 132/135 (97%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAA KRA PTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI
Sbjct: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120

Query: 121 MPRDMQLARRLRGEG 135
           MPRDMQLARRLR EG
Sbjct: 121 MPRDMQLARRLRREG 135


>gi|88987392 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score =  257 bits (656), Expect = 3e-69
 Identities = 132/135 (97%), Positives = 132/135 (97%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAA KRA PTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI
Sbjct: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120

Query: 121 MPRDMQLARRLRGEG 135
           MPRDMQLARRLR EG
Sbjct: 121 MPRDMQLARRLRREG 135


>gi|41147170 PREDICTED: similar to HIStone family member (his-72)
           [Homo sapiens]
          Length = 136

 Score =  257 bits (656), Expect = 3e-69
 Identities = 132/135 (97%), Positives = 132/135 (97%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAA KRA PTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 1   MARTKQTARKATAWQAPRKPLATKAAGKRAPPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI
Sbjct: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120

Query: 121 MPRDMQLARRLRGEG 135
           MPRDMQLARRLR EG
Sbjct: 121 MPRDMQLARRLRREG 135


>gi|4885385 H3 histone, family 3B [Homo sapiens]
          Length = 136

 Score =  222 bits (565), Expect = 1e-58
 Identities = 112/136 (82%), Positives = 124/136 (91%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQSAAIGALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504279 H3 histone, family 3A [Homo sapiens]
          Length = 136

 Score =  222 bits (565), Expect = 1e-58
 Identities = 112/136 (82%), Positives = 124/136 (91%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQSAAIGALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|53793688 histone cluster 2, H3a [Homo sapiens]
          Length = 136

 Score =  217 bits (552), Expect = 3e-57
 Identities = 109/136 (80%), Positives = 123/136 (90%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|31742503 histone cluster 2, H3c [Homo sapiens]
          Length = 136

 Score =  217 bits (552), Expect = 3e-57
 Identities = 109/136 (80%), Positives = 123/136 (90%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|183076548 histone cluster 2, H3d [Homo sapiens]
          Length = 136

 Score =  217 bits (552), Expect = 3e-57
 Identities = 109/136 (80%), Positives = 123/136 (90%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEASEAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504287 histone cluster 1, H3e [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504295 histone cluster 1, H3h [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504289 histone cluster 1, H3i [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504281 histone cluster 1, H3a [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|10440560 histone cluster 1, H3f [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|21071021 histone cluster 1, H3d [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504297 histone cluster 1, H3b [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504293 histone cluster 1, H3j [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504285 histone cluster 1, H3c [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504291 H3 histone family, member H [Homo sapiens]
          Length = 136

 Score =  215 bits (547), Expect = 1e-56
 Identities = 108/136 (79%), Positives = 122/136 (89%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ    DLRFQS+A+ ALQEA EAYLV LFEDTNLCAIHA+RVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|4504299 histone cluster 3, H3 [Homo sapiens]
          Length = 136

 Score =  209 bits (533), Expect = 5e-55
 Identities = 104/136 (76%), Positives = 120/136 (88%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATK ARK A  TGG+KKPHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRL+REIAQ    DLRFQS+A+ ALQEA E+YLV LFEDTNLC IHA+RVTI
Sbjct: 61  LLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTI 120

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 121 MPKDIQLARRIRGERA 136


>gi|188528667 histone H3-like [Homo sapiens]
          Length = 135

 Score =  208 bits (529), Expect = 1e-54
 Identities = 107/136 (78%), Positives = 121/136 (88%), Gaps = 1/136 (0%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARK+T  +APRK LATKAARK    T G+K PHRY+PGT+ALREIR+YQKST+
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVK-PHRYRPGTVALREIRRYQKSTE 59

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTI 120
           LL+RKLPFQRLVREIAQ  + DLRFQSAA+GALQEASEAYLV L EDTNLCAIHA+RVTI
Sbjct: 60  LLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTI 119

Query: 121 MPRDMQLARRLRGEGA 136
           MP+D+QLARR+RGE A
Sbjct: 120 MPKDIQLARRIRGERA 135


>gi|169167750 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 193

 Score =  197 bits (502), Expect = 2e-51
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 46  MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 105

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 101
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL
Sbjct: 106 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 146


>gi|169168508 PREDICTED: similar to hCG1642908 [Homo sapiens]
          Length = 193

 Score =  197 bits (502), Expect = 2e-51
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 60
           MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ
Sbjct: 46  MARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQ 105

Query: 61  LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 101
           LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL
Sbjct: 106 LLLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYL 146


>gi|239742093 PREDICTED: similar to histone H3.3B [Homo sapiens]
          Length = 141

 Score =  181 bits (458), Expect = 3e-46
 Identities = 89/122 (72%), Positives = 108/122 (88%)

Query: 15  QAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQLLLRKLPFQRLVRE 74
           +A RK L TKAA K A  TGG+KKPH Y+PGT+ALREIR+YQK+T+LL+RKL FQRLV+E
Sbjct: 20  KAARKQLGTKAAHKSAPSTGGVKKPHHYRPGTVALREIRRYQKATELLIRKLRFQRLVQE 79

Query: 75  IAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPRDMQLARRLRGE 134
           IAQ +  DLRFQSAAIGALQEASEAYLV LFED+NLCAIHA+R+TIMP+++QLARR++G+
Sbjct: 80  IAQDLKTDLRFQSAAIGALQEASEAYLVGLFEDSNLCAIHAKRLTIMPKEIQLARRIQGK 139

Query: 135 GA 136
            A
Sbjct: 140 RA 141


>gi|4502775 centromere protein A isoform a [Homo sapiens]
          Length = 140

 Score =  104 bits (259), Expect = 3e-23
 Identities = 66/138 (47%), Positives = 85/138 (61%), Gaps = 11/138 (7%)

Query: 9   RKATAWQAPRK----PLATKAARKRASPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63
           R++   +APR+    P  T    +R    G     H R + G L  +EIRK QKST LL+
Sbjct: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62

Query: 64  RKLPFQRLVREIAQAISP--DLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
           RKLPF RL REI    +   D  +Q+ A+ ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122

Query: 122 PRDMQLARRLRG--EGAG 137
           P+D+QLARR+RG  EG G
Sbjct: 123 PKDVQLARRIRGLEEGLG 140


>gi|109637779 centromere protein A isoform b [Homo sapiens]
          Length = 114

 Score = 79.7 bits (195), Expect = 8e-16
 Identities = 56/136 (41%), Positives = 71/136 (52%), Gaps = 33/136 (24%)

Query: 9   RKATAWQAPRK----PLATKAARKRASPTGGIKKPH-RYKPGTLALREIRKYQKSTQLLL 63
           R++   +APR+    P  T    +R    G     H R + G L  +EIRK QKST LL+
Sbjct: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGWL--KEIRKLQKSTHLLI 62

Query: 64  RKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPR 123
           RKLPF RL                        A+EA+LV LFED  L  +HA RVT+ P+
Sbjct: 63  RKLPFSRL------------------------AAEAFLVHLFEDAYLLTLHAGRVTLFPK 98

Query: 124 DMQLARRLRG--EGAG 137
           D+QLARR+RG  EG G
Sbjct: 99  DVQLARRIRGLEEGLG 114


>gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 2   ARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61
           A ++ T+ +  + Q P++  +TKA +++     G ++ H  + G         Y      
Sbjct: 113 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 166

Query: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
                 F R+++++ Q +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 167 ------FPRVLKQVHQGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 216

Query: 122 PRDMQLARRL 131
            RD+Q+A RL
Sbjct: 217 SRDIQMAVRL 226


>gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 2   ARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61
           A ++ T+ +  + Q P++  +TKA +++     G ++ H  + G         Y      
Sbjct: 113 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 166

Query: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
                 F R+++++ Q +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 167 ------FPRVLKQVHQGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 216

Query: 122 PRDMQLARRL 131
            RD+Q+A RL
Sbjct: 217 SRDIQMAVRL 226


>gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 248

 Score = 34.3 bits (77), Expect = 0.038
 Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 16/130 (12%)

Query: 2   ARTKQTARKATAWQAPRKPLATKAARKRASPTGGIKKPHRYKPGTLALREIRKYQKSTQL 61
           A ++ T+ +  + Q P++  +TKA +++     G ++ H  + G         Y      
Sbjct: 104 ASSETTSEEGQSIQEPKEANSTKAQKQKRRGCRGSRRRHANRRGDSFGDSFTPY------ 157

Query: 62  LLRKLPFQRLVREIAQAISPDLRFQSAAIGALQEASEAYLVQLFEDTNLCAIHARRVTIM 121
                 F R+++++   +S        A+  +       L ++  +    A + +RVTI 
Sbjct: 158 ------FPRVLKQVHXGLS----LSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTIT 207

Query: 122 PRDMQLARRL 131
            RD+Q+A RL
Sbjct: 208 SRDIQMAVRL 217


>gi|126722969 centromere protein T [Homo sapiens]
          Length = 561

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 89  AIGALQEASEAYLVQLFEDTNLCAIHARRVTIMPRDMQLARRLRG 133
           A+  +++  + Y   L +D  + A HA R T+ P D++L  R +G
Sbjct: 479 ALEMVEKCLDKYFQHLCDDLEVFAAHAGRKTVKPEDLELLMRRQG 523


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,154,921
Number of Sequences: 37866
Number of extensions: 192207
Number of successful extensions: 642
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 61
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.